FC873749

Overview
NameFC873749
Unique NameFC873749
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873749 vs. ExPASy Swiss-Prot
Match: GLRX_SOLLC (Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.505e-23
Identity = 49/57 (85.96%), Postives = 56/57 (98.25%), Query Frame = 3
Query:   12 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 182
            DGS+IQ+ALAEWTGQ+TVPNVFIG KHIGGCD+TTALHREGKL+PLLTEAGA+AKT+
Sbjct:   50 DGSEIQAALAEWTGQRTVPNVFIGRKHIGGCDATTALHREGKLLPLLTEAGAIAKTS 106          
BLAST of FC873749 vs. ExPASy Swiss-Prot
Match: GLRX_VERFO (Glutaredoxin OS=Vernicia fordii PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.059e-22
Identity = 45/53 (84.91%), Postives = 51/53 (96.23%), Query Frame = 3
Query:   12 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 170
            DGSD+Q+ALAEWTGQ+TVPNVFIGGKHIGGCD TT +H+EGKL+PLLTEAGAV
Sbjct:   50 DGSDLQNALAEWTGQRTVPNVFIGGKHIGGCDKTTGMHQEGKLIPLLTEAGAV 102          
BLAST of FC873749 vs. ExPASy Swiss-Prot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN=GRXC6 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 3.999e-21
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 3
Query:   12 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTA 182
            DGS++QSALAEWTGQ+TVPNVFI GKHIGGCD T AL+ EGKLVPLLTEAGA+A +A
Sbjct:   50 DGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASSA 106          
BLAST of FC873749 vs. ExPASy Swiss-Prot
Match: GLRX_RICCO (Glutaredoxin OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.999e-21
Identity = 46/53 (86.79%), Postives = 51/53 (96.23%), Query Frame = 3
Query:   12 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 170
            DGS+IQ+ALAEWTGQ+TVPNVFIGGKHIGGCDSTTA H +G+LVPLLTEAGAV
Sbjct:   50 DGSEIQTALAEWTGQRTVPNVFIGGKHIGGCDSTTAKHSQGQLVPLLTEAGAV 102          
BLAST of FC873749 vs. ExPASy Swiss-Prot
Match: GRXC2_ARATH (Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.910e-21
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 3
Query:   12 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA-KTA 182
            DGS IQS LAEWTGQ+TVPNVFIGG HIGGCD+T+ LH++GKLVPLLTEAGA+A KTA
Sbjct:   50 DGSQIQSGLAEWTGQRTVPNVFIGGNHIGGCDATSNLHKDGKLVPLLTEAGAIAGKTA 107          
BLAST of FC873749 vs. ExPASy Swiss-Prot
Match: GRXC4_ORYSJ (Glutaredoxin-C4, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXC4 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 3
Query:   12 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVA 173
            DGS++QSALA+WTGQ+TVP VFI GKHIGGCD T A+H+ G LVPLLTEAGA+A
Sbjct:   76 DGSELQSALADWTGQRTVPCVFIKGKHIGGCDDTMAMHKGGNLVPLLTEAGAIA 129          
BLAST of FC873749 vs. ExPASy Swiss-Prot
Match: GRXC1_ARATH (Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 4.576e-17
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 3
Query:    6 IGDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAVAKTAA 185
            + DG +IQSAL+EWTGQ TVPNVFI G HIGGCD     +++GKLVPLLTEAGA+A  ++
Sbjct:   64 MSDGGEIQSALSEWTGQTTVPNVFIKGNHIGGCDRVMETNKQGKLVPLLTEAGAIADNSS 123          
BLAST of FC873749 vs. ExPASy Swiss-Prot
Match: GLRX_DICDI (Glutaredoxin OS=Dictyostelium discoideum GN=grxA PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.432e-12
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   12 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 164
            DGS++QSA  + +G +TVP VFI  K IGGCD+TT LH +GKL+PLL EAG
Sbjct:   48 DGSELQSAAGQISGVRTVPQVFINEKFIGGCDATTKLHSQGKLIPLLQEAG 98          
BLAST of FC873749 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.359e-11
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 3
Query:   12 DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 161
            +GS +Q+ L + TGQ TVPNVFIGGKHIGGC  T  LH +G+L  +L EA
Sbjct:  123 EGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEA 172          
The following BLAST results are available for this feature:
BLAST of FC873749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GLRX_SOLLC2.505e-2385.96Glutaredoxin OS=Solanum lycopersicum PE=3 SV=1[more]
GLRX_VERFO8.059e-2284.91Glutaredoxin OS=Vernicia fordii PE=3 SV=1[more]
GRXC6_ORYSJ3.999e-2180.70Glutaredoxin-C6 OS=Oryza sativa subsp. japonica GN... [more]
GLRX_RICCO3.999e-2186.79Glutaredoxin OS=Ricinus communis PE=3 SV=1[more]
GRXC2_ARATH8.910e-2181.03Glutaredoxin-C2 OS=Arabidopsis thaliana GN=GRXC2 P... [more]
GRXC4_ORYSJ2.426e-1875.93Glutaredoxin-C4, chloroplastic OS=Oryza sativa sub... [more]
GRXC1_ARATH4.576e-1765.00Glutaredoxin-C1 OS=Arabidopsis thaliana GN=GRXC1 P... [more]
GLRX_DICDI4.432e-1262.75Glutaredoxin OS=Dictyostelium discoideum GN=grxA P... [more]
GRS12_ARATH8.359e-1160.00Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2AB09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873749 ID=FC873749; Name=FC873749; organism=Citrus clementina; type=EST; length=481bp
AATTTATAGGTGATGGAAGTGACATTCAATCAGCTCTAGCTGAGTGGACT
GGACAGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACACATTGGTGG
CTGCGATTCAACTACTGCACTGCACAGGGAAGGGAAGCTGGTTCCTCTGC
TCACTGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTGATGGATGGCTATT
GTCTGCCTGTTAATTCTAGTAATAAATAAAGAATGTGTTGGTAGTGCTTA
ATCTGTCTGAATTAAACATGAAATTATGCTTATTTGAGTAATTTCCAATG
CACTTTTTTGTTCAGTTTCTGTTTTATGTTGAAATCTGTATGAATTTTAT
CAGATTTTTCATCTACTATATCCATGTAGAGTCATTTCTACTGTAAATTA
TTTCAGTGTAGCTGCTATAGATCATTTTTTGTCTTTGGTGGATTTCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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