FC873784

Overview
NameFC873784
Unique NameFC873784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length831
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873784_ssr299 microsatellite FC873784_ssr299:299..310. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1149 contig Ccv1_Contig1149:1..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873784 vs. ExPASy Swiss-Prot
Match: YIPL7_ARATH (Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.347e-31
Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = 2 
Query:  227 VNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 400
            VNI +GP EERLMLSGMHTV DIFCCCCGQ VGWKY +AH+K QKYKEGKFVLER RI
Sbjct:   48 VNISMGPLEERLMLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRI 105

HSP 2 Score: 47.7506 bits (112), Expect = 7.347e-31
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:  127 MGRIFLVELKGRSYYKCRFCNSHLALADSVLS 222
            MGRIF VEL+GRSY +CRFC +HLAL D ++S
Sbjct:    1 MGRIFTVELEGRSY-RCRFCRTHLALPDDLVS 31
[Close]
BLAST of FC873784 vs. ExPASy Swiss-Prot
Match: YIPL_SOLTU (Protein yippee-like OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.530e-23
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 2 
Query:  227 VNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 400
            VN+  G  E R+M++GMHTV DIFC CCG IVGWKY  AH+K+QKYKEGK VLER++I
Sbjct:   48 VNVTSGEIENRMMMTGMHTVADIFCVCCGSIVGWKYETAHEKSQKYKEGKSVLERFKI 105

HSP 2 Score: 36.965 bits (84), Expect = 4.530e-23
Identity = 14/32 (43.75%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:  127 MGRIFLVELKGRSYYKCRFCNSHLALADSVLS 222
            MGR+F++ L+G+  Y C+ C +HLAL+++++S
Sbjct:    1 MGRLFVLTLEGK-IYSCKHCGTHLALSENIVS 31
[Close]
BLAST of FC873784 vs. ExPASy Swiss-Prot
Match: YIPL3_ARATH (Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.068e-21
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:  227 VNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 400
            VN+  G +E+R+M++GMHTV DI+C  CG  VGWKY  A +KNQKYKEGK VLER+++
Sbjct:   48 VNVYAGKKEDRMMMTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKV 105

HSP 2 Score: 40.0466 bits (92), Expect = 1.068e-21
Identity = 18/32 (56.25%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:  127 MGRIFLVELKGRSYYKCRFCNSHLALADSVLS 222
            MGR+FLV L+G+S Y C+ C ++LAL D V+S
Sbjct:    1 MGRLFLVNLEGKS-YSCKHCKTNLALCDDVVS 31
[Close]
BLAST of FC873784 vs. ExPASy Swiss-Prot
Match: YIPL1_ARATH (Protein yippee-like At3g08990 OS=Arabidopsis thaliana GN=At3g08990 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.389e-21
Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = 2 
Query:  227 VNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 400
            VN+ +G +E R+M++G HTV DIFC  CG +VGWKY  A+DK+QKYKEGKF+LER+++
Sbjct:   48 VNVTVGEKEHRVMITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKV 105

HSP 2 Score: 35.4242 bits (80), Expect = 1.389e-21
Identity = 12/32 (37.50%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:  127 MGRIFLVELKGRSYYKCRFCNSHLALADSVLS 222
            MGR+F+++L+G   Y C++C +H A+ + ++S
Sbjct:    1 MGRLFVIDLEGL-VYSCKYCQTHFAVTNDIIS 31
[Close]
BLAST of FC873784 vs. ExPASy Swiss-Prot
Match: YIPL4_ARATH (Protein yippee-like At3g55890 OS=Arabidopsis thaliana GN=At3g55890 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.553e-19
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:  227 VNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 400
            VN+ +G +E+R+M++G+H V DIFC  CG  VGWKY  AH+K+QKYKEGK VLE ++I
Sbjct:   48 VNVSVGEKEDRMMITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKI 105

HSP 2 Score: 33.8834 bits (76), Expect = 4.553e-19
Identity = 13/32 (40.62%), Postives = 23/32 (71.88%), Query Frame = 1 
Query:  127 MGRIFLVELKGRSYYKCRFCNSHLALADSVLS 222
            MGR+F+V+L+G + Y C+ C +HL+    ++S
Sbjct:    1 MGRVFMVDLEG-NIYICKLCKTHLSTDQDIMS 31
[Close]
BLAST of FC873784 vs. ExPASy Swiss-Prot
Match: YIPL_ORYSJ (Putative yippee-like protein Os10g0369500 OS=Oryza sativa subsp. japonica GN=Os10g0369500 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.988e-16
Identity = 33/58 (56.90%), Postives = 50/58 (86.21%), Query Frame = 2 
Query:  227 VNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 400
            VNI LGP E+R +++G+HTV+DI+C CC QI+GW+Y  A+++++KYKEGKF+LE+ R+
Sbjct:   57 VNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRYEKAYEESEKYKEGKFILEKARM 114
[Close]
BLAST of FC873784 vs. ExPASy Swiss-Prot
Match: YPL1_DROME (Protein yippee-like CG15309 OS=Drosophila melanogaster GN=CG15309 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.780e-13
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 2 
Query:  227 VNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLE 388
            VN+  G  EER++L+G+H V DI+C CC   +GWKY  A++ +QKYKEGKF++E
Sbjct:   50 VNVACGQTEERVLLTGLHAVADIYCECCKTPLGWKYEHAYESSQKYKEGKFIIE 103

HSP 2 Score: 22.7126 bits (47), Expect = 1.780e-13
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 1 
Query:  169 YKCRFCNSHLALADSVLS 222
            Y C  C +HLA  D ++S
Sbjct:   16 YSCVHCRAHLASHDELIS 33
[Close]
BLAST of FC873784 vs. ExPASy Swiss-Prot
Match: YPEL4_RAT (Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.953e-13
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 2 
Query:  227 VNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLE 388
            VN+  GP E+RL+L+G+H+V DIFC  C   +GWKY  A + +QKYKEGK+++E
Sbjct:   63 VNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

HSP 2 Score: 22.7126 bits (47), Expect = 4.953e-13
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 1 
Query:  169 YKCRFCNSHLALADSVLS 222
            Y C  C +HLA  D ++S
Sbjct:   29 YSCVHCRAHLAKHDELIS 46
[Close]
BLAST of FC873784 vs. ExPASy Swiss-Prot
Match: YPEL4_MOUSE (Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.953e-13
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 2 
Query:  227 VNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLE 388
            VN+  GP E+RL+L+G+H+V DIFC  C   +GWKY  A + +QKYKEGK+++E
Sbjct:   63 VNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

HSP 2 Score: 22.7126 bits (47), Expect = 4.953e-13
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 1 
Query:  169 YKCRFCNSHLALADSVLS 222
            Y C  C +HLA  D ++S
Sbjct:   29 YSCVHCRAHLAKHDELIS 46
[Close]
BLAST of FC873784 vs. ExPASy Swiss-Prot
Match: YPEL4_HUMAN (Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.953e-13
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 2 
Query:  227 VNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLE 388
            VN+  GP E+RL+L+G+H+V DIFC  C   +GWKY  A + +QKYKEGK+++E
Sbjct:   63 VNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

HSP 2 Score: 22.7126 bits (47), Expect = 4.953e-13
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 1 
Query:  169 YKCRFCNSHLALADSVLS 222
            Y C  C +HLA  D ++S
Sbjct:   29 YSCVHCRAHLAKHDELIS 46
The following BLAST results are available for this feature:
BLAST of FC873784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
YIPL7_ARATH7.347e-3182.76Protein yippee-like At5g53940 OS=Arabidopsis thali... [more]
YIPL_SOLTU4.530e-2367.24Protein yippee-like OS=Solanum tuberosum PE=2 SV=1[more]
YIPL3_ARATH1.068e-2160.34Protein yippee-like At3g11230 OS=Arabidopsis thali... [more]
YIPL1_ARATH1.389e-2160.34Protein yippee-like At3g08990 OS=Arabidopsis thali... [more]
YIPL4_ARATH4.553e-1958.62Protein yippee-like At3g55890 OS=Arabidopsis thali... [more]
YIPL_ORYSJ3.988e-1656.90Putative yippee-like protein Os10g0369500 OS=Oryza... [more]
YPL1_DROME1.780e-1353.70Protein yippee-like CG15309 OS=Drosophila melanoga... [more]
YPEL4_RAT4.953e-1353.70Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel... [more]
YPEL4_MOUSE4.953e-1353.70Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=... [more]
YPEL4_HUMAN4.953e-1353.70Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AD12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873784 ID=FC873784; Name=FC873784; organism=Citrus clementina; type=EST; length=831bp
CTGGTGTCTTAACTTGTCAAGTTAACAGCAGAAAGTAGTCTAATTAGTTG
CGAAGGTGACGTTGTTGTGTTGTTGATAATATGACAGGTCAAACTTAATT
GTTTTTGCTTGCAAATTGCAATTCAAATGGGAAGGATTTTTCTGGTGGAG
CTGAAAGGCAGGTCTTATTACAAATGCAGATTCTGTAACAGCCATCTCGC
TCTTGCTGATAGTGTCCTTTCCTGGGGTGAATATAATGCTTGGACCTCAA
GAGGAGAGGTTGATGCTCTCTGGCATGCATACTGTGGAGGATATATTTTG
CTGCTGCTGCGGACAAATTGTTGGCTGGAAATACGTTGCTGCACACGACA
AAAACCAAAAATACAAAGAAGGGAAGTTTGTTCTTGAAAGATGGAGGATT
GTTGAAGAGGTCACAGAGGAACTTAGTCTCGAAACCCATACTCATTCAAA
TGAGGCAGAAACTCCTTAGGAACGTGAAGTTTAAATTAAATCTAAACCAT
AGTGGCAAGACAATAGACTGTTAAGGAGCCATTTACACAATTGTGGGAAC
GGTAGACGGCTGCTTTGTGTTTCTATTATGTGGACTTTTGGCCAAAATCT
TGTTTAGCACCGCATCGCCCTTGACCAACGTTTAGGGGGGCCATTGGCTC
ACGAAGTTGGCCGTGAATGGAGAATTATTTTGAGATATACAAGTGAAGTC
GTATATATGTAATTATTACCATGCTAATGTTTGGTTTCTTTTGCATAAAA
CTGCGTGATCAACTTTCACTACTTTAGGTGCTTCGCTGTGGCTAATTGCT
GGGAGGTTGAAGGGCGTATGCCTTAAATTTT
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