FC873792

Overview
NameFC873792
Unique NameFC873792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873792 vs. ExPASy Swiss-Prot
Match: GGH_ARATH (Gamma-glutamyl hydrolase OS=Arabidopsis thaliana GN=GGH PE=1 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 9.080e-73
Identity = 128/188 (68.09%), Postives = 153/188 (81.38%), Query Frame = 1
Query:    1 LLSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFEWGPKAIPHTEDAIRVTQQAANFFISEARKSSNRPPARKVLDNLIYNYSPTYCGKAGKGYDEVYIFT*LRPVI 564
            LL+MI+S++R+I E  D  N AS+LQFV+N+NI+GT+FQRFPPELLKKL TDCLVMQNH +GISP+  + N  L+ FFKI+TT +D+  KVYVSTVQ+  YPVT FQWHPEKNAFEWG   IPH+EDAI+VTQ AAN  +SEARKS NRP ++KVL NLIYNY PTYCG AG GYDEVYIFT  R ++
Sbjct:  160 LLTMIISQNRDIFEKMDARNSASSLQFVENVNIQGTIFQRFPPELLKKLGTDCLVMQNHRFGISPQSFEGNIALSNFFKIVTTCVDDNGKVYVSTVQSTKYPVTGFQWHPEKNAFEWGSSKIPHSEDAIQVTQHAANHLVSEARKSLNRPESKKVLSNLIYNYKPTYCGYAGIGYDEVYIFTQQRSLL 347          
BLAST of FC873792 vs. ExPASy Swiss-Prot
Match: GGH_SOYBN (Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.228e-54
Identity = 105/182 (57.69%), Postives = 128/182 (70.33%), Query Frame = 1
Query:    1 LLSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFEWGPK-AIPHTEDAIRVTQQAANFFISEARKSSNRPPARKVLDNLIYNYSPTYCGKAGKGYDEVYIF 543
            L+  IVSE  +ILE F  ++  S+L      N +G+LFQRFP +LL +L TDCLV+ NH Y ISP ++Q N +L+ FF+IL TS D   K +VST +   YPVT   W PEKNAFEW      PHTEDAIRVTQ  ANFFISEARKS+N P A+KV D+LIYNY PT+ G AGKGYD+VY+F
Sbjct:  160 LVIRIVSEQTDILEPFTASSLPSSLVLWNEANAKGSLFQRFPSDLLTQLKTDCLVLHNHRYAISPRKLQYNTKLSDFFEILATSGDRDGKTFVSTARGRKYPVTVNLWQPEKNAFEWATSLKAPHTEDAIRVTQSTANFFISEARKSTNTPDAQKVRDSLIYNYKPTFGGTAGKGYDQVYLF 341          
BLAST of FC873792 vs. ExPASy Swiss-Prot
Match: GGHB_DICDI (Gamma-glutamyl hydrolase B OS=Dictyostelium discoideum GN=gghB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.518e-27
Identity = 64/177 (36.16%), Postives = 104/177 (58.76%), Query Frame = 1
Query:   19 SEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFEWGPK-AIPHTEDAIRVTQQAANFFISEARKSSNRPPARKVL-DNLIYNYSPTYCGKAGKGYDEVYIF 543
            +E  ++L  F+  N +  L F  NI +E  + +  P  ++  L+ D + M NHH+GISP     N  L +FF +L T+ D+    ++S +++ +YP+ A  WHPEK+ + W  K A  H+ +AI   Q  +NFF++E RKS+++    +VL  +LIYNY+PTY  K     +++YIF
Sbjct:  139 AESFDVLTDFNAENYSIPLNF-SNIALESKIMKNCPTNIINSLANDPITMNNHHFGISPNTFDNNSLLNQFFNVLATNNDKSGNEFISLIESKDYPIYAIIWHPEKSPYSWYSKDATDHSFNAILACQYMSNFFVNETRKSNHKFNDEEVLFKSLIYNYNPTYTFKE-THVEQIYIF 313          
BLAST of FC873792 vs. ExPASy Swiss-Prot
Match: GGHA_DICDI (Gamma-glutamyl hydrolase A OS=Dictyostelium discoideum GN=gghA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.882e-26
Identity = 57/182 (31.32%), Postives = 102/182 (56.04%), Query Frame = 1
Query:    4 LSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFE-WGPKAIPHTEDAIRVTQQAANFFISEARKSSNRPPARKV-LDNLIYNYSPTYCGKAGKGYDEVYIF 543
            L+++ +++ N+L +++  N    L F  ++     LF      +++ L+++ + M NH +G+SP+  Q    +  FF +L+T++D     ++ST++A NYP+   QWHPEK  FE W  + + H+ D+I   Q  +NFF++E RKS +      V    LIYNY+P Y       ++++Y F
Sbjct:  136 LALLSADNFNLLSSYNSENYTVPLNFT-SLAAGSRLFSLASSSIMQSLASEPITMNNHQFGLSPQTYQQTSSINTFFDVLSTNVDRDGNTFISTIEAKNYPIYGTQWHPEKPIFEWWDQEVMNHSFDSIMANQYTSNFFVNECRKSLHSFSDPSVEASTLIYNYTPQYSESTVPDFEQIYYF 316          
BLAST of FC873792 vs. ExPASy Swiss-Prot
Match: GGH_HUMAN (Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.507e-22
Identity = 63/183 (34.43%), Postives = 99/183 (54.10%), Query Frame = 1
Query:    4 LSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKV-YVSTVQAYNYPVTAFQWHPEKNAFEW-GPKAIPHTEDAIRVTQQAANFFISEARKSSNRPPARKVLDN-LIYNYSPTYCGKAGKGYDEVYIF 543
            LS+++S +  +L   D  + A  L F     +   +FQ FP ELL  L+ + L    H + +S +    N++L KFF +LTT+ D   K+ ++ST++ Y YPV   QWHPEK  +EW     I H  +A++     A FF++EARK+++   +    +  LIY +SP Y G     + + YIF
Sbjct:  140 LSLLISGEC-LLTATDTVDVAMPLNFTGG-QLHSRMFQNFPTELLLSLAVEPLTANFHKWSLSVKNFTMNEKLKKFFNVLTTNTD--GKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARKNNHHFKSESEEEKALIYQFSPIYTGNI-SSFQQCYIF 317          
BLAST of FC873792 vs. ExPASy Swiss-Prot
Match: GGH_BOVIN (Gamma-glutamyl hydrolase OS=Bos taurus GN=GGH PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.507e-22
Identity = 56/151 (37.09%), Postives = 85/151 (56.29%), Query Frame = 1
Query:   97 IEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFEWGP-KAIPHTEDAIRVTQQAANFFISEARKSSNRPPAR-KVLDNLIYNYSPTYCGKAGKGYDEVYIF 543
            ++  +FQ FP +LL  L+ + L    H + +S      N++L  FF ILTT+ D  N  ++ST++ Y YP+   QWHPEK  +EWG  + I H  +A++     A FF++EARKS++   +  +    LIY Y PTY G     + + YIF
Sbjct:  169 LQSRMFQNFPADLLLSLAVEPLTAHFHKWSLSVMNFTKNEKLKAFFSILTTNTDG-NIDFISTMEGYRYPIYGVQWHPEKAPYEWGQLRGISHAPNAVKAAFYLAEFFVAEARKSNHHFESDVEETKALIYQYRPTYTGNV-SSFQQSYIF 317          
BLAST of FC873792 vs. ExPASy Swiss-Prot
Match: GGH_RAT (Gamma-glutamyl hydrolase OS=Rattus norvegicus GN=Ggh PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.295e-22
Identity = 60/182 (32.97%), Postives = 101/182 (55.49%), Query Frame = 1
Query:    4 LSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFEWGP-KAIPHTEDAIRVTQQAANFFISEARKSSNR-PPARKVLDNLIYNYSPTYCGKAGKGYDEVYIF 543
            LS++VS D N+L   + ++    L F ++   +  +F+  P ELL  L+++ L    H + +S +    N++L KFF ILT + D   + ++S+++ Y YP+ A QWHPEK  FEW   + I H  +A++ +   A FFISEA K+ +      +  ++LIY + P Y G     + + Y+F
Sbjct:  139 LSVLVSND-NLLTLTNTSSVKLPLNFTRDSK-QSRMFRNLPEELLNSLASENLTANFHKWSLSVKNFTENEKLKKFFNILTVNTDGKTE-FISSMEGYKYPIYAVQWHPEKAPFEWKKLRGISHAPNAVKTSFYLAKFFISEALKNDHHFENELEETESLIYQFCPVYTGNI-SSFQQAYMF 316          
BLAST of FC873792 vs. ExPASy Swiss-Prot
Match: GGH_MOUSE (Gamma-glutamyl hydrolase OS=Mus musculus GN=Ggh PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.528e-22
Identity = 63/182 (34.62%), Postives = 100/182 (54.95%), Query Frame = 1
Query:    4 LSMIVSEDRNILETFDGANQASTLQFVKNINIEGTLFQRFPPELLKKLSTDCLVMQNHHYGISPERMQANQELAKFFKILTTSMDEYNKVYVSTVQAYNYPVTAFQWHPEKNAFEW-GPKAIPHTEDAIRVTQQAANFFISEARKSSNR-PPARKVLDNLIYNYSPTYCGKAGKGYDEVYIF 543
            LS++VS + N+L + D  ++   L F +    +  +F+ FP ELL  L+ + L    H + +S +    N++L KFF ILTT+ D   + ++S+++ + YPV A QWHPEK  FEW     I H  +A++ +   A F +SEARK+S+      K   +LIY   P Y G     + + Y+F
Sbjct:  139 LSVLVSGE-NLLTSTDTKSKKLPLNFTEGAR-KNKMFKHFPTELLDSLALENLTANFHKWSLSVKNFTENEKLKKFFNILTTNTDGKTE-FISSMEGFKYPVYAVQWHPEKAPFEWKNLGGISHAPNAVKTSFYLAEFLVSEARKNSHHFENVVKETASLIYKVYPIYTGNI-SSFQQAYMF 316          
The following BLAST results are available for this feature:
BLAST of FC873792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GGH_ARATH9.080e-7368.09Gamma-glutamyl hydrolase OS=Arabidopsis thaliana G... [more]
GGH_SOYBN7.228e-5457.69Gamma-glutamyl hydrolase OS=Glycine max PE=2 SV=1[more]
GGHB_DICDI1.518e-2736.16Gamma-glutamyl hydrolase B OS=Dictyostelium discoi... [more]
GGHA_DICDI4.882e-2631.32Gamma-glutamyl hydrolase A OS=Dictyostelium discoi... [more]
GGH_HUMAN2.507e-2234.43Gamma-glutamyl hydrolase OS=Homo sapiens GN=GGH PE... [more]
GGH_BOVIN2.507e-2237.09Gamma-glutamyl hydrolase OS=Bos taurus GN=GGH PE=2... [more]
GGH_RAT7.295e-2232.97Gamma-glutamyl hydrolase OS=Rattus norvegicus GN=G... [more]
GGH_MOUSE9.528e-2234.62Gamma-glutamyl hydrolase OS=Mus musculus GN=Ggh PE... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3DB11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873792 ID=FC873792; Name=FC873792; organism=Citrus clementina; type=EST; length=766bp
CTTTTATCAATGATCGTTAGCGAGGACAGAAACATTCTGGAAACATTTGA
TGGAGCAAATCAGGCATCTACCCTCCAATTCGTCAAAAACATTAATATTG
AAGGAACATTGTTCCAAAGATTTCCCCCGGAGCTGCTTAAGAAGTTGAGT
ACGGATTGCCTGGTTATGCAAAACCACCATTATGGCATTTCACCCGAAAG
AATGCAAGCAAACCAGGAGCTAGCTAAGTTTTTTAAGATCTTGACAACAA
GCATGGATGAATATAATAAGGTCTATGTCTCGACAGTGCAAGCTTATAAC
TATCCTGTGACCGCCTTCCAATGGCATCCAGAGAAAAATGCTTTTGAATG
GGGGCCAAAAGCAATTCCACACACAGAGGACGCCATTCGGGTGACTCAAC
AAGCTGCAAACTTTTTTATAAGCGAGGCTAGGAAGTCATCAAACAGGCCA
CCTGCTCGAAAAGTACTTGACAACCTCATTTACAATTACAGTCCCACCTA
CTGCGGGAAGGCTGGGAAGGGATACGATGAGGTTTACATCTTTACCTAAC
TTCGACCCGTAATTCTGAGAAGGTTGCCAGTTGTAAGTTGTTGGAAATAT
AGTAAGTGATGTTATTGTAACAAACTATGTTATTGTTGTAACGAACTTTG
CTGTATCGTATGAAGCTTATCTTGGGTTTGTTTTTATACCTTCCTGTCAG
ACAGTTGGCAGATAGTTACATTAAATGCCAACAGTTTCATGTTAAAAAAA
AAAAAAAAAAAAAAAA
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