FC873800

Overview
NameFC873800
Unique NameFC873800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873800 vs. ExPASy Swiss-Prot
Match: AAP3_ARATH (Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.721e-38
Identity = 72/102 (70.59%), Postives = 82/102 (80.39%), Query Frame = 2
Query:    8 LNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPFSTSY 313
            LN+FRL+WRT+FVI+TTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIP+WST+W+CLQ+ S+ CL                DLKSYKPF + Y
Sbjct:  375 LNVFRLIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVLLDLKSYKPFRSEY 476          
BLAST of FC873800 vs. ExPASy Swiss-Prot
Match: AAP5_ARATH (Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.702e-37
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = 2
Query:    2 YNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPFSTSY 313
            +NLNLFRLVWRT FV+ TT+ISML+PFFNDVVGLLGA+GFWPLTVYFPVEMYIAQK +P+W TKW+CLQ+LSV CL                DLK YKPF + +
Sbjct:  377 FNLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAAAAGSVIGIVSDLKVYKPFQSEF 480          
BLAST of FC873800 vs. ExPASy Swiss-Prot
Match: AAP2_ARATH (Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.384e-34
Identity = 66/104 (63.46%), Postives = 81/104 (77.88%), Query Frame = 2
Query:    2 YNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPFSTSY 313
            Y +N+FR+V+R+ FV+ TTVISML+PFFNDVVG+LGALGFWPLTVYFPVEMYI Q+K+ KWST+W+CLQ+LSVACL                DLK YKPF ++Y
Sbjct:  390 YKVNVFRMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVMLDLKVYKPFKSTY 493          
BLAST of FC873800 vs. ExPASy Swiss-Prot
Match: AAP4_ARATH (Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.636e-33
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 2
Query:    2 YNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPFSTSY 313
            Y +N+FR V+R+ FV+LTTVISML+PFFNDVVG+LGALGFWPLTVYFPVEMYI Q+K+ +WS KW+CLQ+LS  CL                DLK YKPF T+Y
Sbjct:  363 YKVNVFRAVYRSGFVVLTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAGVMLDLKVYKPFKTTY 466          
BLAST of FC873800 vs. ExPASy Swiss-Prot
Match: AAP1_ARATH (Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.829e-26
Identity = 51/104 (49.04%), Postives = 72/104 (69.23%), Query Frame = 2
Query:    2 YNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPFSTSY 313
            +N++LFRLVWRT +V++TTV++M+ PFFN ++GL+GA  FWPLTVYFPVEM+IAQ KI K+S +W+ L+ +   CL                 +K+YKPF T +
Sbjct:  381 FNISLFRLVWRTAYVVITTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIAGLISSVKTYKPFRTMH 484          
BLAST of FC873800 vs. ExPASy Swiss-Prot
Match: AAP8_ARATH (Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.549e-25
Identity = 52/98 (53.06%), Postives = 67/98 (68.37%), Query Frame = 2
Query:    8 LNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPF 301
            +NLFRLVWRT +V+LTT ++M+ PFFN ++GLLGA  FWPLTVYFPV M+IAQ K+ K+S +WL L +L + CL                 +KSYKPF
Sbjct:  374 VNLFRLVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLINSVKSYKPF 471          
BLAST of FC873800 vs. ExPASy Swiss-Prot
Match: AAP6_ARATH (Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.506e-25
Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 2
Query:    2 YNLNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACLXXXXXXXXXXXXXXXXDLKSYKPF 301
            +++N  RLVWRT +V++T V++M+ PFFND +GL+GA  FWPLTVYFP+EM+IAQKKIPK+S  W  L+ILS  C                  LK +KPF
Sbjct:  379 FSINFLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQSLKDFKPF 478          
BLAST of FC873800 vs. ExPASy Swiss-Prot
Match: AAP7_ARATH (Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.968e-18
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = 2
Query:    8 LNLFRLVWRTIFVILTTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPKWSTKWLCLQILSVACL 229
            LN  R+  RT++V++TT ++++ P+FN+V+G++GAL FWPL VYFPVEM I QKKI  W+  WL L+  S  CL
Sbjct:  374 LNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCL 447          
The following BLAST results are available for this feature:
BLAST of FC873800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
AAP3_ARATH2.721e-3870.59Amino acid permease 3 OS=Arabidopsis thaliana GN=A... [more]
AAP5_ARATH6.702e-3766.35Amino acid permease 5 OS=Arabidopsis thaliana GN=A... [more]
AAP2_ARATH2.384e-3463.46Amino acid permease 2 OS=Arabidopsis thaliana GN=A... [more]
AAP4_ARATH2.636e-3362.50Amino acid permease 4 OS=Arabidopsis thaliana GN=A... [more]
AAP1_ARATH1.829e-2649.04Amino acid permease 1 OS=Arabidopsis thaliana GN=A... [more]
AAP8_ARATH1.549e-2553.06Amino acid permease 8 OS=Arabidopsis thaliana GN=A... [more]
AAP6_ARATH4.506e-2551.00Amino acid permease 6 OS=Arabidopsis thaliana GN=A... [more]
AAP7_ARATH6.968e-1852.70Probable amino acid permease 7 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2AE12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873800 ID=FC873800; Name=FC873800; organism=Citrus clementina; type=EST; length=602bp
CTACAACCTCAACCTCTTCCGGTTGGTTTGGAGGACAATTTTTGTCATCT
TAACAACTGTGATTTCAATGCTTCTCCCATTCTTTAACGACGTTGTTGGT
CTCCTCGGAGCTCTAGGATTTTGGCCACTTACAGTATACTTCCCTGTTGA
GATGTATATTGCGCAAAAGAAGATACCAAAGTGGAGCACAAAATGGCTTT
GTCTCCAAATCCTAAGCGTAGCTTGCCTAATAATCACCATAGCTGCAGCG
GCTGGCTCTATTGCAGGAGTTGTTACTGACCTTAAGTCTTATAAGCCCTT
CAGCACCAGCTACTAATTCAGTCTGATTACAAATGGAAGTAGCCATTGAT
GATGTTCGACAAGGAAAAGGATCAATCATTAGACTTTTCAGTTCTTGTTT
ATGTTAATATGTCAAGTGCCTAAACTGGTCATGTTACTGCTATTTTCATT
AGCTCTCCGTTGTCTCTTTGCCCTTCTCATCACAAACAAAAGCAGGACCA
TGTATCTGTGCATAGGAGTCCTCAAGATTTGAACAATGTAACGTTGTCCA
TTTTCCAAATGCAAAATAGAAAAATTTAAACCAAAAAAAAAAAAAAAAAA
AA
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