FC873815

Overview
NameFC873815
Unique NameFC873815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length800
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB5B_ARATH (Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2 PE=1 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 9.928e-102
Identity = 189/238 (79.41%), Postives = 197/238 (82.77%), Query Frame = 1
Query:   91 MKLDTSGLESTSPF--FGSGDELCPEXXXXXXXXXXXXTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGP 798
            MKLDTSGLE+T P   FGS  E+               TDFD FQK     +K AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRL G RFSVGSGSPYAYGVLDSGYKFDMS+          IYHATFRD ASGGVASVY+VGP
Sbjct:    1 MKLDTSGLETTMPVIGFGSNSEMLDGFSSAPSFDLPRTTDFDGFQKKAVEMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKFDMSVEEASELARRSIYHATFRDGASGGVASVYHVGP 238          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.889e-101
Identity = 186/238 (78.15%), Postives = 197/238 (82.77%), Query Frame = 1
Query:   91 MKLDTSGLESTSPF--FGSGDELCPEXXXXXXXXXXXXTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGP 798
            MKLDTSG E++ P   FGS  ++  E             +FD FQK  K  LKHAKGTTTLAFIFK GVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDETGPGLYYVD+EGGRL G RFSVGSGSPYAYGVLDSGYK+DMS+          IYHATFRD ASGGVASVY+VGP
Sbjct:    1 MKLDTSGFETSMPMIGFGSSSDMLDELSSVPSFDLPRTKEFDGFQKKAKDMLKHAKGTTTLAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRSIYHATFRDGASGGVASVYHVGP 238          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.098e-100
Identity = 184/236 (77.97%), Postives = 195/236 (82.63%), Query Frame = 1
Query:   91 MKLDTSGLESTSPFFGSGDELCPEXXXXXXXXXXXXTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGP 798
            MKLDTSGLEST+P F   D +               TDFD FQK+    +K AKGTTTLAFIFK GVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILY+YRGMGLSVGTMIAGWDETGPGLYYVDSEGGRL G RFSVGSGSPYAYGVLD+GYK+DM++          IYHAT+RD ASGGV SVY+VGP
Sbjct:    1 MKLDTSGLESTAPIFRRSDFVFDGLQMTPSFDLPNPTDFDGFQKEAVQMVKPAKGTTTLAFIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGMRFSVGSGSPYAYGVLDNGYKYDMTVEEASELARRAIYHATYRDGASGGVVSVYHVGP 236          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB5_MOUSE (Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 6.721e-66
Identity = 119/180 (66.11%), Postives = 142/180 (78.89%), Query Frame = 1
Query:  253 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYV 792
            GTTTLAF F  GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ GT FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V
Sbjct:   59 GTTTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNLYHV 238          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB5_BOVIN (Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.721e-66
Identity = 119/180 (66.11%), Postives = 142/180 (78.89%), Query Frame = 1
Query:  253 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYV 792
            GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  S+Y+V
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEEAYDLARRAIYQATYRDAYSGGSVSLYHV 238          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB5_PONAB (Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 8.778e-66
Identity = 118/180 (65.56%), Postives = 142/180 (78.89%), Query Frame = 1
Query:  253 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYV 792
            GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHV 238          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB5_HUMAN (Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3)

HSP 1 Score: 250.366 bits (638), Expect = 8.778e-66
Identity = 118/180 (65.56%), Postives = 142/180 (78.89%), Query Frame = 1
Query:  253 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYV 792
            GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  FSVGSGS YAYGV+D GY +D+ +          IY AT+RDA SGG  ++Y+V
Sbjct:   59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHV 238          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB5_RAT (Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1 SV=3)

HSP 1 Score: 249.595 bits (636), Expect = 1.497e-65
Identity = 118/180 (65.56%), Postives = 143/180 (79.44%), Query Frame = 1
Query:  253 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYV 792
            GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L  +CR++EL NK RISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ GT FSVGSGS YA+GV+D GY +D+ +          IY AT+RDA SGG  ++Y+V
Sbjct:   59 GTTTLAFKFQHGVIVAADSRATAGPYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAFGVMDRGYSYDLQVEEAYDLARRAIYQATYRDAYSGGAVNLYHV 238          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB5_DICDI (Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5 PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.956e-63
Identity = 114/185 (61.62%), Postives = 144/185 (77.84%), Query Frame = 1
Query:  238 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYV 792
            L+ A GTTTLAF++  G++V+ DS+++ G Y++S+SVKK+IEI P +LGTMAGGAADC FW R LG +CRL+EL NK  ISV  ASK+LANI+YSY+G GLS+GTMI GWD+TGP LYYVD++G RL G RFS GSGS YAYGVLD+G+K+DM+           +YHAT RDA SGG  +VY+V
Sbjct:   57 LEFAHGTTTLAFVYGGGIIVSVDSKSTQGPYVASRSVKKVIEITPTLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKTGPQLYYVDNDGTRLHGQRFSCGSGSTYAYGVLDTGFKWDMNDEEAYELGRRAVYHATHRDAYSGGAINVYHV 241          
BLAST of FC873815 vs. ExPASy Swiss-Prot
Match: PSB5_CHICK (Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.450e-60
Identity = 115/182 (63.19%), Postives = 137/182 (75.27%), Query Frame = 1
Query:  253 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLXGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGP 798
            GTTTLAF F  GV+VA DSRA+ G YI+SQ+V+K+IEINP +LGTMAGGAADC FW R L  +CR++EL NK  ISV  ASKLLAN++Y Y+GMGLS+GTMI GWD+ GPGLYYVDSEG R+ G  F+VGSGS YAYGVLD G + DM+           I+ A  RDA SGG  +VY+VGP
Sbjct:   55 GTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLLARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGTRIPGEAFAVGSGSSYAYGVLDGGRRPDMATDEALELARRAIFQAARRDAYSGGSVTVYHVGP 236          
The following BLAST results are available for this feature:
BLAST of FC873815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
PSB5B_ARATH9.928e-10279.41Proteasome subunit beta type-5-B OS=Arabidopsis th... [more]
PSB5A_ARATH2.889e-10178.15Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]
PSB5_SPIOL1.098e-10077.97Proteasome subunit beta type-5 OS=Spinacia olerace... [more]
PSB5_MOUSE6.721e-6666.11Proteasome subunit beta type-5 OS=Mus musculus GN=... [more]
PSB5_BOVIN6.721e-6666.11Proteasome subunit beta type-5 OS=Bos taurus GN=PS... [more]
PSB5_PONAB8.778e-6665.56Proteasome subunit beta type-5 OS=Pongo abelii GN=... [more]
PSB5_HUMAN8.778e-6665.56Proteasome subunit beta type-5 OS=Homo sapiens GN=... [more]
PSB5_RAT1.497e-6565.56Proteasome subunit beta type-5 OS=Rattus norvegicu... [more]
PSB5_DICDI6.956e-6361.62Proteasome subunit beta type-5 OS=Dictyostelium di... [more]
PSB5_CHICK1.450e-6063.19Proteasome subunit beta type-5 (Fragment) OS=Gallu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2AF08FM1 AbsDev Citrus clementina cDNA clone KN0AAI2AF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873815 ID=FC873815; Name=FC873815; organism=Citrus clementina; type=EST; length=800bp
TTTATTTATTCTCACTGCAGCTTTTATGCTCGATTTCTGCTCGCAACTCT
TAGCTACATTGTCGTTTAATCTTAAATTCAGTGCGTAGACATGAAGCTCG
ACACTAGCGGTCTTGAGTCCACTTCTCCATTTTTCGGGTCAGGTGACGAG
CTCTGTCCTGAGTTATTAGCTGCACCATCATTTGCTCTACCTCTTTCTAC
TGATTTTGATGAATTTCAAAAGGACACTAAAGCTACACTGAAGCATGCCA
AGGGGACAACCACACTTGCTTTTATCTTTAAAGAGGGTGTTATGGTGGCT
GCTGATTCTCGAGCTAGCATGGGAGGCTATATCTCATCACAGTCTGTGAA
GAAAATTATAGAAATCAATCCTTACATGCTTGGCACAATGGCTGGAGGAG
CAGCCGATTGCCAGTTTTGGCACAGAAATCTGGGCATTAAGTGCCGACTA
CATGAATTGGCCAACAAGCGTAGAATTTCAGTTACAGGGGCATCAAAGCT
GCTGGCCAACATTCTCTACTCTTATCGTGGAATGGGGTTGTCTGTTGGGA
CTATGATTGCTGGATGGGATGAGACTGGTCCTGGGCTGTATTATGTGGAC
AGTGAAGGAGGGAGGCTCANAGGAACACGGTTCTCTGTGGGATCAGGTTC
ACCATATGCTTATGGTGTATTGGACAGCGGGTACAAGTTTGACATGTCTA
TTGAAGAAGCTGCGGAGTTGGCTAGAAGAGCTATTTATCATGCAACATTC
AGAGATGCAGCCAGTGGTGGTGTTGCAAGCGTTTATTATGTGGGACCAAA
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