FC875374

Overview
NameFC875374
Unique NameFC875374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12043 contig Ccv1_Contig12043:392..1129. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA2_HUMAN (Transcription elongation factor A protein 2 OS=Homo sapiens GN=TCEA2 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.043e-30
Identity = 74/199 (37.19%), Postives = 115/199 (57.79%), Query Frame = 2
Query:    5 PSVRKPSQGTI-ATPKLTQL----IKCNDSSRDKIRELLANALSKVASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586
            PS ++P      +TP++T      + C D+ R+K RE+L  AL     + D + +     C+  R++  +E  +F  +G +    K + RS + N++D KNPDLR+ VL G + P+++  M+ EEMASDE +   + + ++A+ E Q        TD F C +C ++ CTY Q+QTRS+DEPMTT+V C  C  RWKFC
Sbjct:  109 PSRKRPELPRAPSTPRITTFPPVPVTC-DAVRNKCREMLTAAL-----QTDHDHVAIGADCE--RLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299          
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA1_RAT (Transcription elongation factor A protein 1 OS=Rattus norvegicus GN=Tcea1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30
Identity = 72/176 (40.91%), Postives = 101/176 (57.39%), Query Frame = 2
Query:   71 NDSSRDKIRELLANALSK----VASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586
            +DS R K RE+LA AL      VA  ADEE            +   +E  +++++  +    K + RS + N++D KNP+LRK VL G + P+    M+ EEMASDE +   +N+ ++A+ E Q        TD F C +C ++ CTY Q+QTRSADEPMTT+V C  C  RWKFC
Sbjct:  137 SDSVRLKCREMLAAALRTGDDYVAIGADEE-----------ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301          
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA1_MOUSE (Transcription elongation factor A protein 1 OS=Mus musculus GN=Tcea1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30
Identity = 72/176 (40.91%), Postives = 101/176 (57.39%), Query Frame = 2
Query:   71 NDSSRDKIRELLANALSK----VASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586
            +DS R K RE+LA AL      VA  ADEE            +   +E  +++++  +    K + RS + N++D KNP+LRK VL G + P+    M+ EEMASDE +   +N+ ++A+ E Q        TD F C +C ++ CTY Q+QTRSADEPMTT+V C  C  RWKFC
Sbjct:  137 SDSVRLKCREMLAAALRTGDDYVAIGADEE-----------ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301          
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA1_HUMAN (Transcription elongation factor A protein 1 OS=Homo sapiens GN=TCEA1 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30
Identity = 71/176 (40.34%), Postives = 101/176 (57.39%), Query Frame = 2
Query:   71 NDSSRDKIRELLANALSK----VASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586
            +DS R K RE+LA AL      +A  ADEE            +   +E  +++++  +    K + RS + N++D KNP+LRK VL G + P+    M+ EEMASDE +   +N+ ++A+ E Q        TD F C +C ++ CTY Q+QTRSADEPMTT+V C  C  RWKFC
Sbjct:  137 SDSVRLKCREMLAAALRTGDDYIAIGADEE-----------ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301          
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA1_BOVIN (Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.035e-30
Identity = 71/176 (40.34%), Postives = 101/176 (57.39%), Query Frame = 2
Query:   71 NDSSRDKIRELLANALSK----VASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586
            +DS R K RE+LA AL      +A  ADEE            +   +E  +++++  +    K + RS + N++D KNP+LRK VL G + P+    M+ EEMASDE +   +N+ ++A+ E Q        TD F C +C ++ CTY Q+QTRSADEPMTT+V C  C  RWKFC
Sbjct:  137 SDSVRLKCREMLAAALRTGDDYIAIGADEE-----------ELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301          
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA3_MOUSE (Transcription elongation factor A protein 3 OS=Mus musculus GN=Tcea3 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 6.762e-30
Identity = 75/192 (39.06%), Postives = 111/192 (57.81%), Query Frame = 2
Query:   20 PSQGTIATPKLTQLIKC---NDSSRDKIRELLANALSKVASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586
            PS  T A P +  L  C    DS RDK  E+L+ AL     +A++   D    CD  ++A  +E  ++++L  +    + + RS + N++D +NP LR+ VL G + PE +  M+ EEMASDE +     + ++A+ E Q       TTD  +C++C ++ CTY Q+QTRSADEPMTT+V C  C  RWKFC
Sbjct:  164 PSTPTFA-PAVCLLAPCYLTGDSVRDKCVEMLSAAL-----KAEDNFKDYGVNCD--KLASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 347          
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA2_RAT (Transcription elongation factor A protein 2 OS=Rattus norvegicus GN=Tcea2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.832e-30
Identity = 75/198 (37.88%), Postives = 114/198 (57.58%), Query Frame = 2
Query:    8 SVRKPSQG-TIATPKLTQL----IKCNDSSRDKIRELLANALSKVASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586
            S +KP    T +TP++T      I C D+ R+K RE+L  AL     + D + +    +C+   ++  +E  +F  +G +    K + RS + N++D KNP LR+ VL G + P+++  M+ EEMASDE +   + + ++A+ E Q        TD F C +C ++ CTY Q+QTRS+DEPMTTYV C  C  RWKFC
Sbjct:  110 SCKKPDPPRTSSTPRITTFPQVPITC-DAVRNKCREMLTLAL-----QTDHDHVAVGVSCE--HLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC 299          
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA3_BOVIN (Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.506e-29
Identity = 75/192 (39.06%), Postives = 111/192 (57.81%), Query Frame = 2
Query:   20 PSQGTIATPKLTQLIKC---NDSSRDKIRELLANALSKVASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586
            PS  T A P +  L  C    DS RDK  E+L+ AL     +AD++  D    CD  ++A  +E  ++++L  +    + + RS + N++D +NP LR+ VL G +    +  M+ EEMASDE +     + ++A+ E Q       TTD F+C++C ++ CTY Q+QTRSADEPMTT+V C  C  RWKFC
Sbjct:  166 PSSPTFA-PSVCLLAPCYLTGDSVRDKCVEMLSAAL-----KADDDYKDYGVNCD--KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 349          
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA2_BOVIN (Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.506e-29
Identity = 74/199 (37.19%), Postives = 113/199 (56.78%), Query Frame = 2
Query:    5 PSVRKPSQGTI-ATPKLTQL----IKCNDSSRDKIRELLANALSKVASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586
            PS ++P    + +TP++T      + C D+ R K RE+L  AL    ++ D   I     C    +A  +E  +F  +G +    K + RS + N++D KNP LR++VL G + P+++  M+ EEMASDE +   + + ++A+ E Q        TD F C +C ++ CTY Q+QTRS+DEPMTT+V C  C  RWKFC
Sbjct:  110 PSRKRPELPRMPSTPRITTFPPVPVTC-DAVRTKCREMLTAALQ---TDHDHVAIGADCEC----LAGQIEECIFRDVGNTDMKYKNRVRSRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 300          
BLAST of FC875374 vs. ExPASy Swiss-Prot
Match: TCEA2_MOUSE (Transcription elongation factor A protein 2 OS=Mus musculus GN=Tcea2 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.570e-29
Identity = 75/198 (37.88%), Postives = 113/198 (57.07%), Query Frame = 2
Query:    8 SVRKPSQG-TIATPKLTQL----IKCNDSSRDKIRELLANALSKVASEADEEIIDEVNACDPIRVAVSVESVMFEKLGRSTGAEKLKYRSIMFNIRDEKNPDLRKRVLLGEVKPERLVTMSPEEMASDERQRQIENIKEKALFECQRGGEATATTDQFKCARCGQRKCTYYQMQTRSADEPMTTYVTCVNCSKRWKFC 586
            S +KP    T +TP++T      I C D+ R+K RE+L  AL     + D + +     C+   ++  +E  +F  +G +    K + RS + N++D KNP LR+ VL G + P+++  M+ EEMASDE +   + + ++A+ E Q        TD F C +C ++ CTY Q+QTRS+DEPMTTYV C  C  RWKFC
Sbjct:  110 SCKKPDPPRTPSTPRITTFPQVPITC-DAVRNKCREMLTLAL-----QTDHDHVAVGVNCE--HLSSQIEECIFLDVGNTDMKYKNRVRSRISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC 299          
The following BLAST results are available for this feature:
BLAST of FC875374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TCEA2_HUMAN1.043e-3037.19Transcription elongation factor A protein 2 OS=Hom... [more]
TCEA1_RAT2.324e-3040.91Transcription elongation factor A protein 1 OS=Rat... [more]
TCEA1_MOUSE2.324e-3040.91Transcription elongation factor A protein 1 OS=Mus... [more]
TCEA1_HUMAN3.035e-3040.34Transcription elongation factor A protein 1 OS=Hom... [more]
TCEA1_BOVIN3.035e-3040.34Transcription elongation factor A protein 1 OS=Bos... [more]
TCEA3_MOUSE6.762e-3039.06Transcription elongation factor A protein 3 OS=Mus... [more]
TCEA2_RAT8.832e-3037.88Transcription elongation factor A protein 2 OS=Rat... [more]
TCEA3_BOVIN1.506e-2939.06Transcription elongation factor A protein 3 OS=Bos... [more]
TCEA2_BOVIN1.506e-2937.19Transcription elongation factor A protein 2 OS=Bos... [more]
TCEA2_MOUSE2.570e-2937.88Transcription elongation factor A protein 2 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionC31403C03EF CTVClemen1 Citrus clementina cDNA clone C31403C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875374 ID=FC875374; Name=FC875374; organism=Citrus clementina; type=EST; length=738bp
GGCTCCTAGTGTAAGAAAACCATCACAAGGTACGATTGCAACCCCAAAAC
TGACCCAATTGATCAAATGTAATGACTCTTCGCGTGACAAAATTCGGGAA
CTTCTTGCGAATGCCTTGTCCAAAGTTGCCAGTGAGGCTGATGAGGAAAT
AATTGATGAAGTTAATGCATGTGACCCAATTCGAGTTGCTGTTTCTGTGG
AATCTGTAATGTTTGAAAAGTTAGGGCGCTCTACTGGTGCAGAGAAACTC
AAGTATCGATCTATTATGTTCAACATCCGTGACGAGAAAAACCCTGATTT
AAGAAAAAGGGTTCTTCTTGGAGAGGTCAAACCAGAGAGGCTTGTCACCA
TGAGCCCAGAAGAAATGGCAAGTGATGAGAGACAACGCCAGATTGAGAAT
ATTAAAGAGAAGGCTTTGTTTGAGTGTCAACGTGGTGGTGAAGCGACTGC
CACAACTGATCAATTTAAGTGCGCTAGATGCGGACAACGTAAATGCACTT
ATTATCAGATGCAGACTAGGAGTGCAGATGAACCTATGACAACGTATGTA
ACATGCGTGAACTGCAGCAAGCGTTGGAAGTTCTGCTAATCCAATTCCGG
TCTATCTACAGTTCTGCAGAACCAGATGCAGAGAAGGCATTGAGTTGGAT
TATTTCAGAATCTCCCTTCTCTTTTGTAAACATTTATCCATAGAGTCAGT
GGTTGCAAGGTCTAGAAACTGTCCTTTTATTTTATGTG
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