FC876290

Overview
NameFC876290
Unique NameFC876290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig588 contig Ccv1_Contig588:72..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 6.549e-93
Identity = 171/209 (81.82%), Postives = 187/209 (89.47%), Query Frame = 2
Query:   95 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKGK 715
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT KD+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG LESGNAGEPAKLIRQ+YREAADIIKKGK
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 221          

HSP 2 Score: 21.557 bits (44), Expect = 6.549e-93
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  703 QEGKMCCLMI 732
            ++GKMCCL I
Sbjct:  218 KKGKMCCLFI 227          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 6.552e-93
Identity = 171/209 (81.82%), Postives = 187/209 (89.47%), Query Frame = 2
Query:   95 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKGK 715
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT KD+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG LESGNAGEPAKLIRQ+YREAADIIKKGK
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 221          

HSP 2 Score: 21.557 bits (44), Expect = 6.552e-93
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  703 QEGKMCCLMI 732
            ++GKMCCL I
Sbjct:  218 KKGKMCCLFI 227          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.810e-92
Identity = 165/207 (79.71%), Postives = 183/207 (88.41%), Query Frame = 2
Query:   95 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKGK 715
            P + NGS ++ SVPSS+F G+SLKKV+SR   SKV S S +I A VDE+KQT KDRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN MDG YIAPAFMDKLVVHITKNFM+LPN+KVPLILGIWGGKGQGKSFQCELVFAKM I+PIMMSAG LESGNAGEPAKLIRQ+YREAADII+KGK
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGK 221          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 9.995e-90
Identity = 164/210 (78.10%), Postives = 182/210 (86.67%), Query Frame = 2
Query:   98 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKGK 715
            L+ NGSG   S PSS+FFGTSLKKV SSR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAG LESGNAGEPAKLIRQ+YREA+D+IKKGK
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGK 225          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.305e-89
Identity = 167/210 (79.52%), Postives = 183/210 (87.14%), Query Frame = 2
Query:   98 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKGK 715
            L+ NGSGA  S P+S+FFGTSLKK V+SR+P SKV + SFKI A   E++E++QT KDRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG LESGNAGEPAKLIRQ+YREAAD+I KGK
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGK 223          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 322.398 bits (825), Expect = 1.026e-87
Identity = 166/222 (74.77%), Postives = 184/222 (82.88%), Query Frame = 2
Query:   80 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKGK 715
            MAAAV         PLS NGSG+ A S P+S+F G  +  VS     +K  + SFK+ A V E+KQT  DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN MDG YIAPAFMDKLVVHITKNF++LPNIKVPLILGIWGGKGQGKSFQCELV AKMGINPIMMSAG LESGNAGEPAKLIRQ+YREAAD+IKKGK
Sbjct:    1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGK 221          

HSP 2 Score: 21.557 bits (44), Expect = 1.026e-87
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  703 QEGKMCCLMI 732
            ++GKMCCL I
Sbjct:  218 KKGKMCCLFI 227          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.009e-86
Identity = 160/210 (76.19%), Postives = 176/210 (83.81%), Query Frame = 2
Query:   95 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKG 712
            PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE   VD  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILGIWGGKGQGKSFQCELVF KMGINPIMMSAG LESGNAGEPAKLIRQ+YREAA+II+KG
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 224          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 9.417e-86
Identity = 157/214 (73.36%), Postives = 177/214 (82.71%), Query Frame = 2
Query:   74 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKGK 715
            S + A    + N S     VP+S+F G+ LK VSSR   SK+ + +FKI AE DE KQT+KD+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAG LESGNAGEPAKLIRQ+YREAADIIKKGK
Sbjct:    6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 218          

HSP 2 Score: 21.557 bits (44), Expect = 9.417e-86
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  703 QEGKMCCLMI 732
            ++GKMCCL I
Sbjct:  215 KKGKMCCLFI 224          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.327e-85
Identity = 157/214 (73.36%), Postives = 176/214 (82.24%), Query Frame = 2
Query:   83 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKG 712
            A   PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAG LESGNAGEPAKLIRQ+YREAA+II+KG
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 224          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.398e-83
Identity = 155/212 (73.11%), Postives = 180/212 (84.91%), Query Frame = 2
Query:   83 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKG 712
            A+  PLS N S A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+WGGKGQGKSFQCELVF KMGINPIMMSAG LESGNAGEPAKLIRQ+YREAA+II+KG
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKG 219          
The following BLAST results are available for this feature:
BLAST of FC876290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA1_LARTR6.549e-9381.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR6.552e-9381.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO2.810e-9279.71Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU9.995e-9078.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU1.305e-8979.52Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.026e-8774.77Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC3.009e-8676.19Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA9.417e-8673.36Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC3.327e-8573.36Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.398e-8373.11Ribulose bisphosphate carboxylase/oxygenase activa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003A02EF DevOvary1 Citrus clementina cDNA clone C32003A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876290 ID=FC876290; Name=FC876290; organism=Citrus clementina; type=EST; length=741bp
GGCTTCGCTTTCCTTTGCCTGCATTGCAGCGTGACCCTTTAGCTACTTCA
ATCACAGCCGTCCAATTCTCGCTAGCCTAATGGCTGCTGCTGTACCGTTG
AGCTTCAATGGCTCTGGTGCTGCAACCTCTGTCCCAAGCTCATCTTTCTT
TGGCACCAGCTTGAAGAAGGTAAGCTCAAGGATCCCCCCATCCAAGGTCC
CTTCTGCGAGCTTCAAGATTACTGCTGAAGTCGATGAGAACAAGCAGACC
AAGAAGGACAGATGGAAGGGCCTTGCCTACGACGAATCTGATGACCAACA
AGACATCACCAGAGGAAAAGGTGCTGTGGACTCTCTGTTCCAAGCCCCCA
TGGGAACCGGAACTCACTATGCTGTCATGAGTTCTTATGACTACATCAGC
CAAGGTCTCCGCACATACAACTTGGACAACACGATGGACGGTCTCTACAT
TGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCA
TGTCCCTGCCCAACATCAAGGTTCCTCTCATCTTGGGTATTTGGGGAGGC
AAAGGACAAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGGG
CATCAACCCAATTATGATGAGTGCCGGAAGATTGGAAAGTGGCAATGCTG
GAGAACCCGCTAAGTTGATCAGGCAGAAGTACCGTGAGGCAGCTGACATT
ATCAAGAAGGGAAAATGTGCTGCCTCATGATCATGATCTTG
back to top