FC876446

Overview
NameFC876446
Unique NameFC876446
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876446 vs. ExPASy Swiss-Prot
Match: B3GTK_ARATH (Probable beta-1,3-galactosyltransferase 20 OS=Arabidopsis thaliana GN=B3GALT20 PE=2 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 3.155e-99
Identity = 169/214 (78.97%), Postives = 195/214 (91.12%), Query Frame = 1
Query:    1 GVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEMSSKWKAEPLPARPAHLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKW 642
            G++G+HINVGGRHV+SFPYR GFT+EDATGLA+ GDVDIHS++AT+L  SHPSFS Q+ +E SS+WKA PLP  P  LF+GVLSATNHF+ERMA+RKTWMQ   IKSS+VVARFFVALNPRKEVNA+LKKEA +FGDIVILPFMDRYELVVLKTIAICEFGVQNVTA YIMKCDDDTFIRV+++LK+I+G+ P++SLYMGNLNL HRPLRTGKW
Sbjct:  361 GIDGFHINVGGRHVSSFPYRPGFTIEDATGLAVTGDVDIHSIHATSLSTSHPSFSPQKAIEFSSEWKAPPLPGTPFRLFMGVLSATNHFSERMAVRKTWMQHPSIKSSDVVARFFVALNPRKEVNAMLKKEAEYFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAPYIMKCDDDTFIRVESILKQIDGVSPEKSLYMGNLNLRHRPLRTGKW 574          
BLAST of FC876446 vs. ExPASy Swiss-Prot
Match: B3GTH_ARATH (Probable beta-1,3-galactosyltransferase 17 OS=Arabidopsis thaliana GN=B3GALT17 PE=2 SV=2)

HSP 1 Score: 316.62 bits (810), Expect = 6.823e-86
Identity = 145/214 (67.76%), Postives = 180/214 (84.11%), Query Frame = 1
Query:    1 GVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEMSSKWKAEPLPARPAHLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKW 642
            G+EGYHI+V GRH+TSFPYRTGF LEDATGLA+KG++D+HSVYA +LP+++PSF+ Q+ LEM   WKA  LP +P  LFIG+LSA NHFAERMA+RK+WMQ   ++SS VVARFFVAL+ RKEVN  LKKEA +FGDIVI+P+MD Y+LVVLKT+AICE+GV  V A Y+MKCDDDTF+RVDAV++E E +  + SLY+GN+N  H+PLRTGKW
Sbjct:  350 GMEGYHISVNGRHITSFPYRTGFVLEDATGLAVKGNIDVHSVYAASLPSTNPSFAPQKHLEMQRIWKAPSLPQKPVELFIGILSAGNHFAERMAVRKSWMQQKLVRSSKVVARFFVALHARKEVNVDLKKEAEYFGDIVIVPYMDHYDLVVLKTVAICEYGVNTVAAKYVMKCDDDTFVRVDAVIQEAEKVKGRESLYIGNINFNHKPLRTGKW 563          
BLAST of FC876446 vs. ExPASy Swiss-Prot
Match: B3GTJ_ARATH (Probable beta-1,3-galactosyltransferase 19 OS=Arabidopsis thaliana GN=B3GALT19 PE=2 SV=2)

HSP 1 Score: 307.375 bits (786), Expect = 4.139e-83
Identity = 144/214 (67.29%), Postives = 174/214 (81.31%), Query Frame = 1
Query:    1 GVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEMSSKWKAEPLPARPAHLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKW 642
            G+EGYH++V G+HVTSFPYRTGFTLEDATGL I GD+D+HSV+A +LP SHPSFS QR LE+SS W+A  LP     +FIG+LSA NHFAERMA+R++WMQ   +KSS VVARFFVAL+ RKEVN  LKKEA FFGDIVI+P+MD Y+LVVLKT+AICE+G   + A +IMKCDDDTF++VDAVL E +     RSLY+GN+N  H+PLR GKW
Sbjct:  357 GLEGYHVSVDGKHVTSFPYRTGFTLEDATGLTINGDIDVHSVFAGSLPTSHPSFSPQRHLELSSNWQAPSLPDEQVDMFIGILSAGNHFAERMAVRRSWMQHKLVKSSKVVARFFVALHSRKEVNVELKKEAEFFGDIVIVPYMDSYDLVVLKTVAICEYGAHQLAAKFIMKCDDDTFVQVDAVLSEAKKTPTDRSLYIGNINYYHKPLRQGKW 570          
BLAST of FC876446 vs. ExPASy Swiss-Prot
Match: B3GTI_ARATH (Probable beta-1,3-galactosyltransferase 18 OS=Arabidopsis thaliana GN=B3GALT18 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.280e-80
Identity = 137/214 (64.02%), Postives = 173/214 (80.84%), Query Frame = 1
Query:    1 GVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEMSSKWKAEPLPARPAHLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKW 642
            G+EGYHINV G+HVTSFPYRTGFTLEDATGL + GD+D+HSV+  +LP SHPSF+ QR LE+S +W+A  +P  P  +FIG+LSA NHF+ERMA+RK+WMQ   I S+ VVARFFVAL+ RKEVN  LKKEA +FGDIV++P+MD Y+LVVLKT+AICE G    +A YIMKCDDDTF+++ AV+ E++ +   RSLY+GN+N  H+PLR GKW
Sbjct:  348 GLEGYHINVDGKHVTSFPYRTGFTLEDATGLTVNGDIDVHSVFVASLPTSHPSFAPQRHLELSKRWQAPVVPDGPVEIFIGILSAGNHFSERMAVRKSWMQHVLITSAKVVARFFVALHGRKEVNVELKKEAEYFGDIVLVPYMDSYDLVVLKTVAICEHGALAFSAKYIMKCDDDTFVKLGAVINEVKKVPEGRSLYIGNMNYYHKPLRGGKW 561          
BLAST of FC876446 vs. ExPASy Swiss-Prot
Match: B3GTF_ARATH (Beta-1,3-galactosyltransferase 15 OS=Arabidopsis thaliana GN=B3GALT15 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.990e-37
Identity = 85/216 (39.35%), Postives = 120/216 (55.56%), Query Frame = 1
Query:    1 GVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEMSSKWKAEPLPARPAHLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT--GKW 642
            G EG  + V G+H+TSF +R        + + I GD  + S+ A+ LP S  S   + V+++ +       P RP  L IGV S  N+F  RMA+R+TWMQ   ++S  V  RFFV L+    VN  L  EA  +GD+ ++PF+D Y L+  KT+AIC FG +  +A +IMK DDD F+RVD VL  +      R L  G +N   +P+R    KW
Sbjct:  320 GTEGMQMTVDGKHITSFAFRDTLEPWLVSEIRITGDFRLISILASGLPTSEES---EHVVDLEALKSPTLSPLRPLDLVIGVFSTANNFKRRMAVRRTWMQYDDVRSGRVAVRFFVGLHKSPLVNLELWNEARTYGDVQLMPFVDYYSLISWKTLAICIFGTEVDSAKFIMKTDDDAFVRVDEVLLSLSMTNNTRGLIYGLINSDSQPIRNPDSKW 532          
BLAST of FC876446 vs. ExPASy Swiss-Prot
Match: B3GTG_ARATH (Probable beta-1,3-galactosyltransferase 16 OS=Arabidopsis thaliana GN=B3GALT16 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.595e-34
Identity = 82/216 (37.96%), Postives = 121/216 (56.02%), Query Frame = 1
Query:    1 GVEGYHINVGGRHVTSFPYRTGFTLEDATGLAIKGDVDIHSVYATNLPASHPSFSLQRVLEMSSKWKAEPLPARPAHLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVALNPRKEVNAVLKKEAAFFGDIVILPFMDRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT--GKW 642
            G+EG+H+ + GRH TSF YR        + + + G + I SV AT LP      SL  ++E   K KA  L      L +GV S  N+F  RMA+R++WMQ   ++S  V  RF + L+  ++VN  + +E+  +GDI  +PF+D Y L+ LKT+A+C  G + + A YIMK DDD F+R+D +L  +E   P  +L  G ++    P R    KW
Sbjct:  300 GLEGFHMTINGRHETSFAYREKLEPWLVSAVKVSGGLKILSVLATRLPIPDDHASL--IIE--EKLKAPSLSGTRIELLVGVFSTGNNFKRRMALRRSWMQYEAVRSGKVAVRFLIGLHTNEKVNLEMWRESKAYGDIQFMPFVDYYGLLSLKTVALCILGTKVIPAKYIMKTDDDAFVRIDELLSSLEE-RPSSALLYGLISFDSSPDREQGSKW 510          
BLAST of FC876446 vs. ExPASy Swiss-Prot
Match: B3GT6_HUMAN (Beta-1,3-galactosyltransferase 6 OS=Homo sapiens GN=B3GALT6 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.453e-11
Identity = 53/158 (33.54%), Postives = 81/158 (51.27%), Query Frame = 1
Query:  184 MSSKWKAEPLPARPA-HLFIGVLSATNHFAERMAIRKTWMQSSKIKSSNVVARFFVAL-NPRKEVNAVLKKEAAFFGDIVILPFM-DRYELVVLKTIAICEFGVQNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP--KRSLYMGNLNLLHRPLRTGKW 642
            MS +    P PAR A  L + V SA      R  IR TW+ + +    +V ARF V       E    L++E A  GD+++LP + D YE +  K +A+  +  ++V   +++K DDD+F R+DA+L E+    P  +R LY G  +   R    G+W
Sbjct:   42 MSGRSPPPPAPARAAAFLAVLVASAPRAAERRSVIRSTWL-ARRGAPGDVWARFAVGTAGLGAEERRALEREQARHGDLLLLPALRDAYENLTAKVLAMLAWLDEHVAFEFVLKADDDSFARLDALLAELRAREPARRRRLYWGFFSGRGRVKPGGRW 198          
The following BLAST results are available for this feature:
BLAST of FC876446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
B3GTK_ARATH3.155e-9978.97Probable beta-1,3-galactosyltransferase 20 OS=Arab... [more]
B3GTH_ARATH6.823e-8667.76Probable beta-1,3-galactosyltransferase 17 OS=Arab... [more]
B3GTJ_ARATH4.139e-8367.29Probable beta-1,3-galactosyltransferase 19 OS=Arab... [more]
B3GTI_ARATH3.280e-8064.02Probable beta-1,3-galactosyltransferase 18 OS=Arab... [more]
B3GTF_ARATH9.990e-3739.35Beta-1,3-galactosyltransferase 15 OS=Arabidopsis t... [more]
B3GTG_ARATH1.595e-3437.96Probable beta-1,3-galactosyltransferase 16 OS=Arab... [more]
B3GT6_HUMAN1.453e-1133.54Beta-1,3-galactosyltransferase 6 OS=Homo sapiens G... [more]
back to top
Properties
Property NameValue
Genbank descriptionC32004H05EF DevOvary1 Citrus clementina cDNA clone C32004H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876446 ID=FC876446; Name=FC876446; organism=Citrus clementina; type=EST; length=643bp
GGTGTTGAAGGATACCATATTAATGTTGGGGGTCGGCATGTGACTTCATT
CCCTTATCGGACGGGGTTTACGCTTGAGGATGCAACAGGTCTAGCAATTA
AAGGAGATGTCGATATTCATTCAGTTTATGCGACCAATCTTCCAGCCTCT
CATCCAAGTTTCTCCCTTCAAAGAGTATTAGAAATGTCATCAAAGTGGAA
AGCTGAGCCTCTACCTGCTAGGCCAGCCCATCTTTTTATTGGAGTTCTTT
CTGCAACCAATCACTTTGCAGAGCGCATGGCAATTAGGAAAACTTGGATG
CAATCTTCAAAAATTAAGTCTTCCAATGTGGTTGCTCGTTTCTTTGTTGC
ACTGAATCCAAGAAAGGAGGTCAATGCTGTGCTGAAGAAGGAAGCTGCCT
TCTTTGGAGACATTGTTATTTTGCCATTTATGGACCGCTATGAGCTTGTG
GTCCTGAAAACTATTGCGATTTGTGAGTTTGGGGTTCAGAATGTGACAGC
TGCTTACATCATGAAATGTGATGATGACACATTTATTAGGGTGGACGCTG
TCCTGAAAGAAATTGAGGGCATCTTTCCAAAGAGGTCCCTTTATATGGGC
AATCTCAATCTCTTACATCGTCCTCTCCGAACTGGGAAATGGG
back to top