FC876579

Overview
NameFC876579
Unique NameFC876579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10380 contig Ccv1_Contig10380:1..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876579 vs. ExPASy Swiss-Prot
Match: WAP53_MESAU (Telomerase Cajal body protein 1 OS=Mesocricetus auratus GN=Wrap53 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.102e-40
Identity = 46/95 (48.42%), Postives = 68/95 (71.58%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 599
            LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP+   + A GSY +T  +Y  D+
Sbjct:  252 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPSQP-LYACGSYGRTLGLYAWDD 344          

HSP 2 Score: 92.8189 bits (229), Expect = 4.102e-40
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:   23 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV---TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            NFLKG KW+PDGS  LT+S D TLRI++LP    S        A +Q  Y   + V    EG+++YD+CW+  MS+S P +   AS++R++PIH+WDA T
Sbjct:  158 NFLKGCKWAPDGSCILTNSADNTLRIYNLPPELYS--------ATEQVDYAEMVPVLRMVEGDTIYDYCWYSLMSSSQPDTSYVASSSRENPIHIWDAFT 249          
BLAST of FC876579 vs. ExPASy Swiss-Prot
Match: WAP53_MOUSE (Telomerase Cajal body protein 1 OS=Mus musculus GN=Wrap53 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.781e-39
Identity = 46/95 (48.42%), Postives = 68/95 (71.58%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 599
            LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP+   + A GSY +T  +Y  D+
Sbjct:  248 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRATF-AKKQGQSGIISCIAFSPSQP-LYACGSYGRTIGLYAWDD 340          

HSP 2 Score: 88.9669 bits (219), Expect = 5.781e-39
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 2
Query:   23 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            NFLKG KW+PDGS  LT+S D  LRI++LP    S          D       L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  154 NFLKGCKWAPDGSCILTNSADNVLRIYNLPPELYSEQEQV-----DYAEMVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFT 245          
BLAST of FC876579 vs. ExPASy Swiss-Prot
Match: WAP53_RAT (Telomerase Cajal body protein 1 OS=Rattus norvegicus GN=Wrap53 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.813e-39
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 599
            LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S +AFSP    + A GSY +T  +Y  D+
Sbjct:  248 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKKQGQSGIISCLAFSPAQP-LYACGSYGRTLGLYAWDD 340          

HSP 2 Score: 89.3521 bits (220), Expect = 9.813e-39
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 2
Query:   23 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            NFLKG KW+PDGS  LT+S D  LRI++LP      ++ + S   D       L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  154 NFLKGCKWAPDGSCILTNSADNVLRIYNLPP-----ELYSESEQVDYAEMVPVLRMVEGDTIYDYCWYSLMSSTQPDTSYVASSSRENPIHIWDAFT 245          
BLAST of FC876579 vs. ExPASy Swiss-Prot
Match: WAP53_HUMAN (Telomerase Cajal body protein 1 OS=Homo sapiens GN=WRAP53 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.826e-38
Identity = 45/95 (47.37%), Postives = 67/95 (70.53%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 599
            LR ++RAY+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    K+GQ+GI+S IAFSP    + A GSY ++  +Y  D+
Sbjct:  264 LRASFRAYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTARPGRDCEVRATF-AKKQGQSGIISCIAFSPAQP-LYACGSYGRSLGLYAWDD 356          

HSP 2 Score: 88.9669 bits (219), Expect = 2.826e-38
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 2
Query:   17 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            P NFLKG KW+PDGS  LT+S D  LRI++LP   + ++      A+        L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  168 PENFLKGCKWAPDGSCILTNSADNILRIYNLPPE-LYHEGEQVEYAE----MVPVLRMVEGDTIYDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFT 261          
BLAST of FC876579 vs. ExPASy Swiss-Prot
Match: WAP53_BOVIN (Telomerase Cajal body protein 1 OS=Bos taurus GN=WRAP53 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.249e-38
Identity = 43/91 (47.25%), Postives = 66/91 (72.53%), Query Frame = 3
Query:  315 LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY 587
            LR ++R+Y+ +DE+TAA S+ F+P G+++F G+N++VRVF   RPGRD E  +T    ++GQ+GI+S IAFSPT   + A GSY ++  +Y
Sbjct:  255 LRASFRSYNHLDELTAAHSLCFSPDGSQLFCGFNRTVRVFSTSRPGRDCEVRTTF-AKRQGQSGIISCIAFSPTQP-LYACGSYGRSLGLY 343          

HSP 2 Score: 88.9669 bits (219), Expect = 6.249e-38
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 2
Query:   17 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS-----LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            P NFLKG KW+PDGS  LT+S D  LRI++LP            L  + +  E +     L + EG+++YD+CW+  MS++ P +   AS++R++PIH+WDA T
Sbjct:  159 PENFLKGCKWAPDGSCILTNSADNILRIYNLPPE----------LYNEGEQLEYAEMAPVLRMVEGDTIYDYCWYSLMSSAQPDTSYVASSSRENPIHIWDAFT 252          
BLAST of FC876579 vs. ExPASy Swiss-Prot
Match: GNR1_SCHPO (Guanine nucleotide-binding protein negative regulator 1 OS=Schizosaccharomyces pombe GN=gnr1 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.178e-12
Identity = 34/99 (34.34%), Postives = 54/99 (54.55%), Query Frame = 2
Query:   17 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 313
            P NF    +WSPDGS+ L+ +ED+ L  +++P + +S   +         SY+        E+VY + W+  M   DP+S +FA ++RD PI L + TT
Sbjct:   45 PLNFFHSSRWSPDGSTILSLTEDQCLNCWNVPFSDLSKKADGPLNFSKHLSYKYQ----SPETVYSYSWYSRMKLDDPSSNLFAVSSRDQPIKLINFTT 139          

HSP 2 Score: 29.6462 bits (65), Expect = 1.178e-12
Identity = 20/97 (20.62%), Postives = 38/97 (39.18%), Query Frame = 3
Query:  318 RCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 593
            + +Y   D  +    +  + F   G  + AG    +  F++    ++    +   G K         GI S  + +P  +  LA+G+YS    IY +
Sbjct:  143 KASYHMIDHQERYQGSHCLQFTNDGEYLIAGDKNCLHHFNIRTGCKEPVMTTVTHGYKVPLWEFSLKGIQSCFSLNPMDSKTLAVGTYSNRVGIYND 239          
The following BLAST results are available for this feature:
BLAST of FC876579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
WAP53_MESAU4.102e-4048.42Telomerase Cajal body protein 1 OS=Mesocricetus au... [more]
WAP53_MOUSE5.781e-3948.42Telomerase Cajal body protein 1 OS=Mus musculus GN... [more]
WAP53_RAT9.813e-3947.37Telomerase Cajal body protein 1 OS=Rattus norvegic... [more]
WAP53_HUMAN2.826e-3847.37Telomerase Cajal body protein 1 OS=Homo sapiens GN... [more]
WAP53_BOVIN6.249e-3847.25Telomerase Cajal body protein 1 OS=Bos taurus GN=W... [more]
GNR1_SCHPO1.178e-1234.34Guanine nucleotide-binding protein negative regula... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2DB02RM1 EHR Citrus clementina cDNA clone KN0AAN2DB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876579 ID=FC876579; Name=FC876579; organism=Citrus clementina; type=EST; length=617bp
GCACGAGGCTTCAATCCCTAACAATTTCCTCAAAGGCATCAAATGGTCGC
CGGATGGTTCAAGTTTCCTTACGAGTTCTGAAGACAAAACGCTTCGCATT
TTCTCATTGCCAGAAAATGGAATCAGCTATGACGTTAATGCCTGTTCTTT
GGCTAAAGATCAAGATTCTTATGAGGCAAGCCTTGTTGTGACGGAAGGAG
AGTCTGTTTATGACTTCTGTTGGTTCCCACACATGTCTGCTTCAGATCCA
ACTAGTTGTGTGTTTGCTTCCACCACTCGTGACCACCCAATTCATCTTTG
GGATGCTACTACTGTTACGTTGCACATACCGGGCTTATGATGCTGTAGAT
GAAATCACTGCTGCCTTTTCAGTTGCATTCAATCCCACTGGTACTAAGAT
ATTTGCTGGATACAACAAATCTGTCCGAGTATTTGATGTACACCGCCCTG
GTAGGGATTTTGAAAAGTATTCAACACTTAAGGGAAATAAAGAAGGCCAA
GCAGGTATAATGTCTGCAATTGCTTTCAGTCCAACCCATACCGGGATGCT
TGCTATCGGTTCCTATAGCCAGACTTCAGCAATTTACAGGGAAGACAACA
TGGAACTCTTATATGTT
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