FC876617

Overview
NameFC876617
Unique NameFC876617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length820
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10398 contig Ccv1_Contig10398:1..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876617 vs. ExPASy Swiss-Prot
Match: COL15_ARATH (Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.959e-37
Identity = 103/201 (51.24%), Postives = 122/201 (60.70%), Query Frame = -1
Query:  119 SCGQGAQIWDFNLGRLRGNEEFKQVEVAY---GASDSVFMIKNFNELMKETSLTNT----EIFGEMYPMNCPVTHGDMASFXXXXXNPTANQGPATSESNNLPIARPSSGSAFGKPKGSSSSKNIQFEQPFL---VRTT--AAAKANLELLAQNRGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASDAP 685
            S GQ +QIWDFNLG+ RG E+  +VE AY   GA+ S F I NF + M ET  TN     EI  + Y  +   T G +               P  SESNN PI        FG  KGS+SS ++ F +       +TT   A KA+LE LAQNRG+AMQRYKEK+KTRRYDK IRYESRKARADTR RV+GRFVKAS+AP
Sbjct:  256 SGGQSSQIWDFNLGQSRGPEDTSRVEAAYVGKGAASS-FTINNFVDHMNETCSTNVKGVKEIKKDDYKRS---TSGQVQ--------------PTKSESNNRPIT-------FGSEKGSNSSSDLHFTEHIAGTSCKTTRLVATKADLERLAQNRGDAMQRYKEKRKTRRYDKTIRYESRKARADTRLRVRGRFVKASEAP 431          
BLAST of FC876617 vs. ExPASy Swiss-Prot
Match: COL14_ARATH (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.294e-35
Identity = 101/230 (43.91%), Postives = 122/230 (53.04%), Query Frame = -1
Query:  125 GEWVEQQAP---FTSLLMMQRQFGSKECDRVGDEGMFWDG--HSCGQGAQIWDFNLGRLRGNEEFKQVEVAYGASDSVFMIKNFNELMKETSLTNTEIFGEMYPMNCPVTHGDMASFXXXXXNPTANQGPATSESNNLPIARPSSGSAFGKPKGSSSSKNIQFEQPFLVRTTAAAKANLELLAQNRGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASD 799
            G  + Q +P   FTSLLM Q   G+         GM W+   HS GQ  QIWDFNLG+ R  +E   VE       S F   N   L  +T  TN   F E Y     V             + T+ +G  TS+SNN+P A  S  S+     G   +++I        R  A   A+LE +AQNR NAMQRYKEKKKTRRYDK IRYE+RKARA+TR RVKGRFVKA+D
Sbjct:  199 GGSISQPSPTTSFTSLLMSQSLCGN---------GMQWNATNHSTGQNTQIWDFNLGQSRNPDEPSPVET----KGSTFTFNNVTHLKNDTRTTNMNAFKESYQQEDSV-------------HSTSTKGQETSKSNNIPAAIHSHKSS-NDSCGLHCTEHIAITSNRATRLVAVTNADLEQMAQNRDNAMQRYKEKKKTRRYDKTIRYETRKARAETRLRVKGRFVKATD 401          
BLAST of FC876617 vs. ExPASy Swiss-Prot
Match: COL9_ARATH (Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.392e-13
Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = -1
Query:  122 PATSESNNLPIARPSSGSAFGKPKGSSSSKNIQFEQPFLVRTTAAAKANLELLAQNRGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASDA 427
            PA S  +   +   SS   F +  G+SSS  +  E P+   T     A    + +N  NA+ RYKEKKK R++DK +RY SRKARAD R+RVKGRFVKA +A
Sbjct:  262 PAHSNISFSGVTGESSAGDF-QECGASSSIQLSGEPPWYPPTLQDNNACSHSVTRN--NAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAGEA 360          
BLAST of FC876617 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.178e-12
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = -1
Query:  125 TAAAKANLELLAQNRGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASD 301
            T+      E+ +  R +A+ RYKEKKK+RRY+KHIRYESRK RA++R R++GRF KA+D
Sbjct:  273 TSTRSMTHEINSLERNSALSRYKEKKKSRRYEKHIRYESRKVRAESRTRIRGRFAKAAD 331          
BLAST of FC876617 vs. ExPASy Swiss-Prot
Match: COL10_ARATH (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = -1
Query:  122 GSSSSKNIQFE-QPFLVRTTAAAKANLELLAQNRGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASDA 355
            G+SS K +  E QP+   T     A+    A  R NA+ RYKEKKK R++DK +RY SRK RAD R+RVKGRFVK+ +A
Sbjct:  285 GASSMKQLSREPQPWCHPTAQDIIASSH--ATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEA 361          
BLAST of FC876617 vs. ExPASy Swiss-Prot
Match: COL12_ARATH (Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = -1
Query:  122 PFLVRTTAAAKANLELLA-QNRGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKASDA 319
            P  + + A  + N E+   Q R  A  RYKEKK  R + K IRY SRKARADTRKRVKGRFVKA D+
Sbjct:  286 PGFIMSEAPWETNFEVSCPQARNEAKLRYKEKKLKRSFGKQIRYASRKARADTRKRVKGRFVKAGDS 352          
The following BLAST results are available for this feature:
BLAST of FC876617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
COL15_ARATH8.959e-3751.24Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsi... [more]
COL14_ARATH1.294e-3543.91Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsi... [more]
COL9_ARATH1.392e-1346.08Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis... [more]
COL13_ARATH1.178e-1255.93Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]
COL10_ARATH2.010e-1251.90Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsi... [more]
COL12_ARATH2.902e-1156.72Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2DD11RM1 EHR Citrus clementina cDNA clone KN0AAN2DD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876617 ID=FC876617; Name=FC876617; organism=Citrus clementina; type=EST; length=820bp
TTTTTTTTTTAATCAACAAATAAAGACTGCTGAATTATGCATTAACCGTA
GGAATGTCAGAGTTATATACAAAAGAGCAAGCAAGAAACATCTCTATCTC
AGCATGTGTTCAACCTTCAGGAGCATCACTAGCTTTAACAAATCGACCTT
TCACTCTCTTCCTAGTATCAGCTCTTGCCTTCCTTGACTCATACCGTATG
TGCTTGTCATATCTTCGGGTTTTCTTCTTCTCCTTGTAACGCTGCATGGC
ATTCCCTCGATTTTGTGCTAGCAGCTCCAGATTGGCCTTGGCTGCTGCAG
TTGTTCTCACAAGAAAAGGCTGTTCAAACTGGATATTTTTAGAGCTACTA
GAGCCTTTGGGCTTTCCAAAAGCTGAACCTGATGATGGCCTTGCTATCGG
TAGGTTGTTGCTCTCAGATGTTGCAGGCCCCTGATTGGCTGTTGGGTTAT
TTGAGTTATTATTAAATGATGCCATGTCACCATGTGTGACGGGACAATTC
ATCGGGTACATTTCTCCAAAAATTTCAGTATTAGTAAGGGATGTTTCTTT
CATCAGTTCATTGAAGTTCTTGATCATAAATACTGAATCACTTGCACCAT
ATGCAACTTCTACCTGTTTAAATTCTTCATTGCCCCTCAATCGTCCCAAA
TTAAAATCCCATATCTGAGCACCCTGACCACAAGAATGTCCATCCCAAAA
CATACCCTCGTCACCAACACGATCACACTCTTTAGAACCGAATTGTCGCT
GCATCATAAGCAGAGACGTGAAAGGCGCTTGTTGCTCAACCCATTCCCCA
ATTCATTCATCCTCGTCGTC
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