FC876671

Overview
NameFC876671
Unique NameFC876671
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.244e-16
Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = 2
Query:  341 IEGTSSLETLLRNFV--------GKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDERRTEI 670
            I+  +  E LL+N          G+ G PPA+K+++EA+ + +V  SE E +   C VC +   +GE  +++PC H +H +CI  WLG + SCPVCR+++  ++ E   +R +R + +
Sbjct:  203 IDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVM-VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEERKKRTSTV 319          
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVE--EEESGNKRDERRTE 667
            PPA+K  VE++P + V   + +A   +C VCL E+E GE  R++PC+H FH++CI  WLG   SCP+CR+++P +  E E   +  ERR +
Sbjct:   53 PPAAKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDSPEYEEYKQEKERRQQ 142          
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDER 658
            PPASK  VE++P + V   + +A   +C VCL E+E GE  R++PC+H FH+ CI  WLG   SCP+CR+++P +  +    + E+
Sbjct:   53 PPASKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPDYEEFKQEK 137          
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.347e-15
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            G  ++ T L N     G PPA K  ++A+P++ V E E    G EC VC E+Y +GE  R++PC H FH +CI  WL    SCPVCR
Sbjct:  187 GLDTIITQLLNQFENTGPPPADKEKIQALPTVPVTE-EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 272          
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRTE 667
            PPA+K +VE +P   +  S+ E    +C VCL E+E  E A EMPC H FH+NCI  WL    SCP+CR+++P +++    +KRD+ R +
Sbjct:   52 PPAAKTAVENLPRTVIRGSQAEL---KCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDTYEEHKRDKARKQ 138          
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.003e-15
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRTE 667
            PPA+KA VE++P   +  S+ E    +C VCL E+E  E   EMPC H FH+NCI  WL    SCP+CR+++P +++    +K+D+ R +
Sbjct:   64 PPAAKAVVESLPRTVIRSSKAEL---KCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQ 150          
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.228e-15
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 2
Query:  308 LVNPLNQGMVVIEGTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVE--EEESGNKRDERRTE 667
            L   L QG+ +  G+  L    +        PPA+KA V+++P + +   + +  G +C VCL E+E  E  REMPCKH FH  CI  WL    SCP+CR ++P +  + E   K  ERR +
Sbjct:   27 LARSLMQGLDIDSGSFDLSDWDQRL-----PPPAAKAVVQSLPVVIISPEQADK-GVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEFKKDKERRRQ 142          
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.228e-15
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            G  ++ T L N     G PPA    ++A+P+I++ E E    G EC VC E+Y VGE  R++PC H FH +CI  WL    +CPVCR
Sbjct:  184 GLDTIITQLLNQFENTGPPPADNEKIQALPTIQITE-EHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269          
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRTE 667
            PPA+KA VE++P   +  ++ +    +C VCL E+E  E   EMPC H FH+NCI  WL    SCP+CR+++P +++    +K+D+ R +
Sbjct:   64 PPAAKAVVESLPRTVISSAKADL---KCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQ 150          
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            G  ++ T L N     G PPA    ++A+P+I++ E E    G EC VC E+Y VGE  R++PC H FH +CI  WL    +CPVCR
Sbjct:  184 GLDTIITQLLNQFENTGPPPADTDKIQALPTIQITE-EHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269          
The following BLAST results are available for this feature:
BLAST of FC876671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CIP8_ARATH1.244e-1633.90E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_XENTR3.621e-1642.86E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
RN181_XENLA1.376e-1541.86E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
RN126_MOUSE2.347e-1544.83RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
RN181_BOVIN3.065e-1543.33E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
RN181_RAT4.003e-1542.22E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
RN181_DANRE5.228e-1536.89E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]
R126A_XENLA5.228e-1543.68RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
RN181_MOUSE6.829e-1540.00E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
R126B_XENLA6.829e-1543.68RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1BA07RM1 EHR Citrus clementina cDNA clone KN0AAN1BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876671 ID=FC876671; Name=FC876671; organism=Citrus clementina; type=EST; length=673bp
GCACGAGGCTTCTTCTCCTTTTTTTTTTCCTCTTAAAAATCGGATTGTTG
ATCACCCTAGTACAGATCTCTCAAAAAAGATTTGATCTTTCTGTCAAAAT
TTCATTCTTTCGATGTCCTCTGAAGCTGAAGCTACTGATGTCTCATCGCT
GTTTGAGAGACTGTTAAGTCACAGAGACATGTCTTTGTTTCTACCCTTTG
TCTTAGGCTTCACAAGCAGCGTCTCCACAGGTGAAAGTTCCGAGAATTCT
CAGAACCCGGATGGGGAAACCCCTCATACAAACAGAAGTTCAAGCGAAAG
AATCATTCTCGTCAATCCTCTCAATCAGGGCATGGTAGTGATTGAAGGGA
CTTCAAGTTTAGAGACTCTGCTGAGAAATTTCGTTGGTAAAGATGGCCAG
CCTCCTGCTTCAAAGGCATCGGTTGAGGCCATGCCAAGTATCAAAGTCGG
TGAAAGCGAAGAGGAAGCTCTTGGTGGTGAGTGTGTCGTGTGTTTAGAGG
AGTATGAGGTTGGGGAGGTGGCGAGAGAGATGCCATGTAAGCACAAGTTT
CATGCAAACTGTATAGAGAAGTGGCTTGGGATTCAGGGGTCGTGTCCTGT
TTGTAGATACAAGATGCCTGTTGAAGAAGAGGAAAGTGGCAACAAAAGAG
ATGAGCGAAGGACAGAAATTTGG
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