FC876671
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.244e-16 Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = 2 Query: 341 IEGTSSLETLLRNFV--------GKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDERRTEI 670 I+ + E LL+N G+ G PPA+K+++EA+ + +V SE E + C VC + +GE +++PC H +H +CI WLG + SCPVCR+++ ++ E +R +R + + Sbjct: 203 IDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVM-VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEERKKRTSTV 319
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16 Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 2 Query: 401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVE--EEESGNKRDERRTE 667 PPA+K VE++P + V + +A +C VCL E+E GE R++PC+H FH++CI WLG SCP+CR+++P + E E + ERR + Sbjct: 53 PPAAKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDSPEYEEYKQEKERRQQ 142
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15 Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 2 Query: 401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDER 658 PPASK VE++P + V + +A +C VCL E+E GE R++PC+H FH+ CI WLG SCP+CR+++P + + + E+ Sbjct: 53 PPASKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPDYEEFKQEK 137
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.347e-15 Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 2 Query: 347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607 G ++ T L N G PPA K ++A+P++ V E E G EC VC E+Y +GE R++PC H FH +CI WL SCPVCR Sbjct: 187 GLDTIITQLLNQFENTGPPPADKEKIQALPTVPVTE-EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 272
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15 Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 2 Query: 401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRTE 667 PPA+K +VE +P + S+ E +C VCL E+E E A EMPC H FH+NCI WL SCP+CR+++P +++ +KRD+ R + Sbjct: 52 PPAAKTAVENLPRTVIRGSQAEL---KCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDTYEEHKRDKARKQ 138
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.003e-15 Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 2 Query: 401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRTE 667 PPA+KA VE++P + S+ E +C VCL E+E E EMPC H FH+NCI WL SCP+CR+++P +++ +K+D+ R + Sbjct: 64 PPAAKAVVESLPRTVIRSSKAEL---KCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQ 150
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 5.228e-15 Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 2 Query: 308 LVNPLNQGMVVIEGTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVE--EEESGNKRDERRTE 667 L L QG+ + G+ L + PPA+KA V+++P + + + + G +C VCL E+E E REMPCKH FH CI WL SCP+CR ++P + + E K ERR + Sbjct: 27 LARSLMQGLDIDSGSFDLSDWDQRL-----PPPAAKAVVQSLPVVIISPEQADK-GVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEFKKDKERRRQ 142
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.228e-15 Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2 Query: 347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607 G ++ T L N G PPA ++A+P+I++ E E G EC VC E+Y VGE R++PC H FH +CI WL +CPVCR Sbjct: 184 GLDTIITQLLNQFENTGPPPADNEKIQALPTIQITE-EHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15 Identity = 36/90 (40.00%), Postives = 57/90 (63.33%), Query Frame = 2 Query: 401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRTE 667 PPA+KA VE++P + ++ + +C VCL E+E E EMPC H FH+NCI WL SCP+CR+++P +++ +K+D+ R + Sbjct: 64 PPAAKAVVESLPRTVISSAKADL---KCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQ 150
BLAST of FC876671 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15 Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2 Query: 347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607 G ++ T L N G PPA ++A+P+I++ E E G EC VC E+Y VGE R++PC H FH +CI WL +CPVCR Sbjct: 184 GLDTIITQLLNQFENTGPPPADTDKIQALPTIQITE-EHVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269 The following BLAST results are available for this feature:
BLAST of FC876671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876671 ID=FC876671; Name=FC876671; organism=Citrus clementina; type=EST; length=673bpback to top |