FC876812

Overview
NameFC876812
Unique NameFC876812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC876812 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.059e-22
Identity = 58/121 (47.93%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:  244 ITREPEPGMSPYILEVPGGNDVVETISNFCRRKNIGICVLTGSGTVANVTLRQPSATPGS---------TITFHGRFDILSISATFLPQNAAYPPLPNIFAISLAGPQGQIVGGSVVGPLL 579
            +TR+    +  ++LEV  G D+VE++S + RR+  G+ VL G+GTV+NVTLRQP  TPG+          +T HGRF+ILS++ T LP  A  PP     +I LAG QGQ+VGGSVV PL+
Sbjct:  105 VTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQP-VTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPA--PPGAGGLSIFLAGGQGQVVGGSVVAPLI 222
The following BLAST results are available for this feature:
BLAST of FC876812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH3.059e-2247.93Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN1CB08RM1 EHR Citrus clementina cDNA clone KN0AAN1CB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876812 ID=FC876812; Name=FC876812; organism=Citrus clementina; type=EST; length=637bp
GCACGAGGCTCACGTGACTCTCAGGCCTCCGAGGAAGACACCAACAGCCA
CAACTCCCCTGTTACCACTCCTCCAACCACCAACCCCGCCGCCGCCGCCG
CTAAATCAAGACAACAACAACAACAACAACAACAGCTTCAGGAACCCACC
ACCACCGGAGGGGATGGTGCTACTATCGAAGTCGTCCGCCGCCCCAGGGG
CAGACCCCCTGGCTCCAAGAACAAGCCCAAGCCTCCTGTTTATATCACCC
GCGAGCCAGAACCCGGCATGAGCCCTTACATTCTCGAAGTCCCCGGCGGA
AACGACGTCGTGGAGACCATCTCCAACTTCTGCAGGCGCAAGAACATCGG
TATCTGCGTGCTCACAGGGTCGGGCACCGTCGCCAACGTTACCCTCCGTC
AGCCCTCCGCGACTCCTGGGTCCACCATCACGTTCCACGGGAGGTTCGAC
ATTCTCTCGATATCCGCGACGTTCTTGCCCCAAAACGCAGCGTATCCGCC
CTTGCCCAACATATTCGCGATATCGCTGGCTGGGCCGCAGGGGCAGATCG
TGGGTGGATCCGTGGTCGGACCGCTGCTGGCTGTTGGGACGGTGTTCGTG
GTGGCCGCTACATTTAACAACCCGTCGTATCACCGGC
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