FC876816

Overview
NameFC876816
Unique NameFC876816
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10382 contig Ccv1_Contig10382:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876816 vs. ExPASy Swiss-Prot
Match: TRM61_MOUSE (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Mus musculus GN=Trmt61a PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.830e-36
Identity = 80/181 (44.20%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  130 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHTTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVISFVTVGVRDIQCHGFPDEFTGLPDSIFLDL 669
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++GG+VY+L PTPELWT+ L H TQILY  DI+ + M LEL PG +V               R+VAPTGH++T +FH+QRA  ARE+F+   +  +VTV  +D+ C GF      + D++FLD+
Sbjct:    4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVICSRGGWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRSVAPTGHLHTVEFHQQRADKAREEFQEHRLSQWVTVHTQDVCCSGF--GVVHVADAVFLDI 182          
BLAST of FC876816 vs. ExPASy Swiss-Prot
Match: TRM61_RAT (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Rattus norvegicus GN=Trmt61a PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.451e-35
Identity = 79/181 (43.65%), Postives = 112/181 (61.88%), Query Frame = 1
Query:  130 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHTTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVISFVTVGVRDIQCHGFPDEFTGLPDSIFLDL 669
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V  ++GG+VY+L PTPELWT+ L H TQILY  DI+ + M LEL PG +V               R++APTGH++T +FH+QRA  ARE+F++  V  +VTV  +D+   GF      + D++FLD+
Sbjct:    4 VAYEELIKEGDTAILSLGHGSMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCSRGGWVYVLHPTPELWTVNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRSIAPTGHLHTVEFHQQRADKAREEFQQHRVSQWVTVHTQDVCRSGF--GVVHVADAVFLDI 182          
BLAST of FC876816 vs. ExPASy Swiss-Prot
Match: TRM61_HUMAN (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Homo sapiens GN=TRMT61A PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.451e-35
Identity = 80/181 (44.20%), Postives = 110/181 (60.77%), Query Frame = 1
Query:  130 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHTTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVISFVTVGVRDIQCHGFPDEFTGLPDSIFLDL 669
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +GG+VY+L PTPELWTL L H TQILY  DI+ + M LEL PG +V               R +APTGH++T +FH+QRA  ARE+F+   V  +VTV  +D+   GF    + + D++FLD+
Sbjct:    4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALITMMLELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAEKAREEFQEHRVGRWVTVRTQDVCRSGF--GVSHVADAVFLDI 182          
BLAST of FC876816 vs. ExPASy Swiss-Prot
Match: TRM61_BOVIN (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A OS=Bos taurus GN=TRMT61A PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.922e-34
Identity = 80/181 (44.20%), Postives = 110/181 (60.77%), Query Frame = 1
Query:  130 ISFTRCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHS-DWIGKPFGSMVFSNKGGFVYLLAPTPELWTLVLSHTTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVISFVTVGVRDIQCHGFPDEFTGLPDSIFLDL 669
            +++   IKEGD  I+   H  M AV+V + +  Q R G  +HS D IG+PFGS V   +GG+VY+L PTPELWTL L H TQILY  DI+ + M LEL PG +V               R +APTGH++T +FH+QRA  ARE+F+   V  +VTV  +D+   GF    + + D++FLD+
Sbjct:    4 VAYEELIKEGDTAILSLGHGAMVAVRVQRGAQTQTRHGVLRHSVDLIGRPFGSKVTCGRGGWVYVLHPTPELWTLNLPHRTQILYSTDIALLTMMLELRPGSVVCESGTGSGSVSHAIIRTIAPTGHLHTVEFHQQRAERAREEFQEHRVGRWVTVLNQDVCRSGF--GVSHVADAVFLDI 182          
BLAST of FC876816 vs. ExPASy Swiss-Prot
Match: TRM61_DICDI (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trmt61a OS=Dictyostelium discoideum GN=trmt61a PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.726e-30
Identity = 71/180 (39.44%), Postives = 107/180 (59.44%), Query Frame = 1
Query:  142 RCIKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFVYLLAPTPELWTLVLSHTTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVISFVTVGVRDIQC--HGF-PDEFTGLPDSIFLDL 669
            + IKEGD V++Y   D M  + +  N+ + ++FG+++H + IGK +GS + S+ G GF +++A TPELW++ L H TQIL+  DIS +I  LEL  G                 AR +AP GH++TF+FHE+R   AR+DF+  G+  ++TV  RD  C   GF   +     D++FLDL
Sbjct:    6 KIIKEGDRVVMYNGKDNMAVLTMESNNVYNSKFGSYRHKNIIGKEYGSKLSSDNGNGFCHVIAMTPELWSITLDHRTQILFNLDISTIIFNLELKNGSRAVESGTGSGSLSSSIARTIAPKGHLFTFEFHEERVKFARKDFKDNGLDQYITVTHRD-ACGKEGFLRQDINNDIDAVFLDL 184          
BLAST of FC876816 vs. ExPASy Swiss-Prot
Match: TRM61_KLULA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Kluyveromyces lactis GN=TRM61 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.995e-26
Identity = 72/197 (36.55%), Postives = 103/197 (52.28%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SNKGGFVYLLAPTPELWTLVLSHTTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVISF--VTVGVRDIQCHGF--------PDEFTG--------LPDSIFLDL 669
            IKEGDLV+ +   D +K + V     F  R+GAF HSD IGKPFGS +      SN+ GF+++L PTPELW++ L H TQI+Y  D S+++  +E  P   V              AR+    GH+++++FHE R   A+++F+  G++     T+  RD+   GF          EF G          D IFLDL
Sbjct:   11 IKEGDLVLAWLSRDNLKPITVKAGEVFNTRYGAFSHSDMIGKPFGSQIAIRTKGSNRFGFIHVLQPTPELWSISLPHRTQIVYTPDSSYIMQRMECNPRSRVIEAGTGSGSFSHAFARS---AGHLFSYEFHEVRYEQAKQEFKEHGLLEAGNTTITHRDVCKDGFEIKNGDTTSHEFRGPEETKVELNADCIFLDL 204          
BLAST of FC876816 vs. ExPASy Swiss-Prot
Match: TRM61_YEAST (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Saccharomyces cerevisiae GN=GCD14 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.479e-25
Identity = 66/165 (40.00%), Postives = 92/165 (55.76%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVF-----SNKGGFVYLLAPTPELWTLVLSHTTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVI-SFVTVGVRDIQCHGF 624
            IKEGDL +++   D +K V++     F  R+G+F H D IGKP+GS +      SNK  FV++L PTPELWTL L H TQI+Y  D S+++  L   P   V              AR+V   GH+++F+FH  R   A E+F+  G+I   VT+  RD+   GF
Sbjct:   13 IKEGDLTLIWVSRDNIKPVRMHSEEVFNTRYGSFPHKDIIGKPYGSQIAIRTKGSNKFAFVHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPHSRVIEAGTGSGSFSHAFARSV---GHLFSFEFHHIRYEQALEEFKEHGLIDDNVTITHRDVCQGGF 174          
BLAST of FC876816 vs. ExPASy Swiss-Prot
Match: TRM61_CANAL (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Candida albicans GN=TRM61 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.213e-25
Identity = 66/176 (37.50%), Postives = 94/176 (53.41%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFVYLLAPTPELWTLVLSHTTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVISFVTVGVRDIQCHGFPDEFTGLP-DSIFLDL 669
            I+EGDLV+ Y     +K + V +   F  R+G F+H   IG  +G  +   KG GF++LL PTPELWTL L H TQI+Y  D S++I  L + PG  V              AR V  +G V+T++FHE R   A+++ E    +   T+  RD+   GF  +   +  D +FLDL
Sbjct:   10 IEEGDLVLAYISRSTIKPINVKKGEIFNTRYGHFEHDKMIGMKYGEQMPGAKGYGFIHLLHPTPELWTLSLPHRTQIVYSPDSSYIIQRLNVKPGSRVIEAGTGSASFTHSFARTVTLSGKVFTYEFHEPRYLEAKKELEE-HKLDNTTITHRDVCNDGFSIDNESIEGDVVFLDL 184          
BLAST of FC876816 vs. ExPASy Swiss-Prot
Match: TRM61_CRYNE (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Cryptococcus neoformans GN=TRM61 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24
Identity = 66/176 (37.50%), Postives = 101/176 (57.39%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG--GFVYLLAPTPELWTLVLSHTTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVISFVTVGVRDIQCHGFPDEFTGLPDSIFLDL 669
            I+ GD+VI+Y   D M A+ +     F N++G + H   IG+ +GS + S     G+V++L PTPELWTL L H TQILY+ DIS++ M L +  G  V              +R+V P+G V +F++H QR  +A ++FE  G+ + V +  R++   GF D   G+ + +FLDL
Sbjct:   14 IEAGDIVILYMARDNMTAITITPGETFHNKYGRYPHDMLIGQKYGSKIHSPPPHPGYVHVLRPTPELWTLSLPHRTQILYLPDISYITMRLGVRVGGKVIEAGTGSGSMTHSLSRSVGPSGQVMSFEYHRQRFETALKEFESHGLTN-VRLQHRNVCKEGFGDA-QGV-EGVFLDL 186          
BLAST of FC876816 vs. ExPASy Swiss-Prot
Match: TRM61_DEBHA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Debaryomyces hansenii GN=TRM61 PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 7.975e-24
Identity = 63/184 (34.24%), Postives = 96/184 (52.17%), Query Frame = 1
Query:  148 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFSNKG-GFVYLLAPTPELWTLVLSHTTQILYIADISFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVAPTGHVYTFDFHEQRAASAREDFERTGVISFVTVGVRDIQCHGF-----PDEFTG----LPDSIFLDL 669
            I+EGDLV+ +     +K + V + S    R+G F+H   IG  +G  +   KG GF++LL PTPELWT+ L H TQI+Y  D S++I  L +  G  V              AR +   G ++T++FHE R   A+++ E  G+++   +  RD+   GF     P++F        D +FLDL
Sbjct:   10 IEEGDLVLAFLGRSNIKPITVTKGSQLNTRYGNFEHDRMIGMKYGEQMPGAKGVGFIHLLYPTPELWTVSLPHRTQIVYTPDSSYIIQRLNVTSGTRVIEAGTGSGSFSHSFARTIGVEGRLFTYEFHEPRYIEAKKELEDHGLLANTVITHRDVCNDGFEISNIPEDFKKDDGICGDVVFLDL 193          
The following BLAST results are available for this feature:
BLAST of FC876816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TRM61_MOUSE1.830e-3644.20tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_RAT3.451e-3543.65tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_HUMAN3.451e-3544.20tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_BOVIN2.922e-3444.20tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_DICDI9.726e-3039.44tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_KLULA4.995e-2636.55tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_YEAST2.479e-2540.00tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CANAL7.213e-2537.50tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_CRYNE1.230e-2437.50tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_DEBHA7.975e-2434.24tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1CC02RM1 EHR Citrus clementina cDNA clone KN0AAN1CC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876816 ID=FC876816; Name=FC876816; organism=Citrus clementina; type=EST; length=671bp
TTCTCTCTGCCTCTCAGATTTTGCTGTCTGACTTCCTGAACCCGTCACAA
TTTTATTTGCAGATAATTGCTTGGTTTTAGTAACTCTTTGATAATTTAAA
GGATGTTGCCAACTGATCCAACGAAAAAGATATCCTTTACTCGATGCATT
AAAGAAGGGGACTTGGTTATTGTCTATGAGAGGCATGACTGCATGAAAGC
TGTTAAAGTATGCCAGAACTCAGCTTTCCAGAACCGTTTTGGTGCGTTTA
AACATTCAGACTGGATTGGGAAGCCCTTTGGGTCTATGGTGTTCAGTAAC
AAGGGCGGATTTGTTTACTTGTTAGCCCCAACTCCGGAGTTATGGACTCT
GGTTTTGAGCCATACAACTCAGATACTTTACATTGCAGATATTAGCTTTG
TCATCATGTACTTAGAACTTGTTCCTGGTTGTTTGGTTCTGGAGTCAGGG
ACTGGAAGTGGATCTTTGACAACCTCTCTTGCAAGGGCTGTAGCTCCTAC
AGGACATGTCTATACTTTTGATTTTCATGAGCAAAGGGCTGCCTCAGCTA
GGGAAGACTTTGAGAGGACAGGAGTGATCAGTTTTGTTACTGTGGGTGTT
AGAGATATCCAGTGTCATGGATTTCCTGATGAATTTACTGGGTTACCTGA
TTCTATATTTCTGGACCTACC
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