FC876838 | Citrus Genome Database

Overview


Name	FC876838
Unique Name	FC876838
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	703

Libraries


Library Name	Type
EHR	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig11254	contig	Ccv1_Contig11254:297..999.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 6.594e-88
Identity = 164/227 (72.25%), Postives = 188/227 (82.82%), Query Frame = 2

Query:    8 ASVKFASVG-GAASQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            +SVKF+S+  G   Q  FRRL         PKYTSIKPLGDRVLVKIK  EEKT GGI LPS AQ+KPQ GEVVAVGEG+T+GK K+DI+V  G Q+IYSKYAGTE+EFN   HLI++EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAGGLLLTE +KEKPSIGTVIAVGPG LDEEG   PL ++ G+TV+YSKYAGNDFKG DG+NYIA +AS+VMA+LS
Sbjct:   27 SSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAILS 253

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.280e-79
Identity = 142/214 (66.36%), Postives = 172/214 (80.37%), Query Frame = 2

Query:   44 SQRSFRRLXXXXXXXXXPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVLS 685
            + RSFR L          KYTS+KPLGDRVL+K K VEEKT  GIFLP+AAQ KPQ+GEVVA+G GK VG  KL ++VK G +V+YSKY GTE+E +G++HLIV+EDD++GILETD++KDLKPLNDR+ IKVAE E  T+GGLLL E+SKEKPS GTV+A GPG LDEEGNR PL +  GNTV+YSKYAGNDFKG DG++Y+  + S+VMAVLS
Sbjct:   42 TSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDVMAVLS 255

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 49/94 (52.13%), Postives = 72/94 (76.60%), Query Frame = 2

Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            ++KPLGDR+++KI   EEKT+ GI LP  A+ KPQ GEVVAVG GKT+   +K++  VK G +V+YSK+AG E+E +G  +LI+R+DD++ ++E
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95

HSP 2 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 2

Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +LKPL DR+ IK+ EAEE T  G++L E +KEKP  G V+AVG G   ++G++    +  G+ V+YSK+AGN+ +  DG  Y+  +  +++AV+
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVE-VDGEEYLIMRQDDILAVI 94

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 2

Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

HSP 2 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 2

Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG + K  DG  Y+  + S+++A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 2

Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

HSP 2 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 2

Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG + K  DG  Y+  + S+++A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = 2

Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94

HSP 2 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = 2

Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG + K  DG  Y+  + S+++A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 46/95 (48.42%), Postives = 70/95 (73.68%), Query Frame = 2

Query:  110 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILETDE 394
            IKPL DRV++K +  EEKT+ G+++P  A+ KPQ G V+AVG G+     K+++SVK G +V+Y KYAGTE+  +G  +LI+RE D++GI+E ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGIIEEEK 100

HSP 2 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 2

Query:  404 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +KPL+DRV IK    EE T  GL + + +KEKP  GTVIAVGPG + E G +  +S+  G+ V+Y KYAG +    DG  Y+  + ++++ ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRV-ENGTKIEMSVKEGDKVLYGKYAGTEIT-IDGEEYLIMRETDILGII 96

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_DESVV (10 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.829e-21
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 2

Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95

HSP 2 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 39/94 (41.49%), Postives = 64/94 (68.09%), Query Frame = 2

Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG   ++G    +++  G+ V+++KYAG + K  DG  ++  +  +++A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIK-IDGVEHLVMREDDILAII 94

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_DESVH (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=groS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.829e-21
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 2

Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95

HSP 2 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 39/94 (41.49%), Postives = 64/94 (68.09%), Query Frame = 2

Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG   ++G    +++  G+ V+++KYAG + K  DG  ++  +  +++A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIK-IDGVEHLVMREDDILAII 94

[Close]

BLAST of FC876838 vs. ExPASy Swiss-Prot
Match: CH10_DESVM (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 50/94 (53.19%), Postives = 67/94 (71.28%), Query Frame = 2

Query:  107 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 385
            ++KPL DRVLVK    EEKT GG+F+P  A+ KP  GEVVA G GK     KL  ++VK G  V++SKYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIKLDGVEHLVMREDDILAIIE 95

HSP 2 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 42/94 (44.68%), Postives = 66/94 (70.21%), Query Frame = 2

Query:  401 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAFKASEVMAVL 682
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG + E+G    +++  G+TV++SKYAG + K  DG  ++  +  +++A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIK-LDGVEHLVMREDDILAII 94

The following BLAST results are available for this feature:

BLAST of FC876838 vs. ExPASy Swiss-Prot

BLAST of FC876838 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CH10C_ARATH	6.594e-88	72.25	20 kDa chaperonin, chloroplastic OS=Arabidopsis th...	[more]
CH10C_SPIOL	3.280e-79	66.36	20 kDa chaperonin, chloroplastic OS=Spinacia olera...	[more]
CH10_NATTJ	2.822e-22	52.13	10 kDa chaperonin OS=Natranaerobius thermophilus (...	[more]
CH10_THEPX	4.814e-22	52.17	10 kDa chaperonin OS=Thermoanaerobacter sp. (strai...	[more]
CH10_THEP3	4.814e-22	52.17	10 kDa chaperonin OS=Thermoanaerobacter pseudethan...	[more]
CH10_THEBR	4.814e-22	52.17	10 kDa chaperonin OS=Thermoanaerobacter brockii GN...	[more]
CH10_RHOMR	6.287e-22	48.42	10 kDa chaperonin OS=Rhodothermus marinus GN=groS ...	[more]
CH10_DESVV	1.829e-21	52.13	10 kDa chaperonin OS=Desulfovibrio vulgaris subsp....	[more]
CH10_DESVH	1.829e-21	52.13	10 kDa chaperonin OS=Desulfovibrio vulgaris (strai...	[more]
CH10_DESVM	2.389e-21	53.19	10 kDa chaperonin OS=Desulfovibrio vulgaris (strai...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAN3BA10RM1 EHR Citrus clementina cDNA clone KN0AAN3BA10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC876838 ID=FC876838; Name=FC876838; organism=Citrus clementina; type=EST; length=703bp
GCACGAGGCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAAC
GCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAG
TACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGAC
TGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCAAA
CAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTT
GGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTA
TTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAATCATCTCA
TAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCAAG
GATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGA
GGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAGGAGAAAC
CTTCCATTGGAACGGTCATTGCTGTTGGACCCGGTCCTCTAGATGAGGAA
GGTAATAGGAAACCTCTATCCATTGCACCAGGGAACACGGTGATGTATTC
GAAGTATGCAGGGAATGACTTCAAGGGCAGTGATGGTACCAACTACATTG
CCTTTAAAGCTTCTGAAGTGATGGCTGTGCTCTCTTAATTGTCTGTGTTT
ACT