FC876852

Overview
NameFC876852
Unique NameFC876852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length831
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10366 contig Ccv1_Contig10366:1..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: ZIP2_ARATH (Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2 PE=2 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 7.331e-103
Identity = 181/280 (64.64%), Postives = 217/280 (77.50%), Query Frame = 3
Query:   15 STFAGGVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTSKSYPFAFMLASAGYLLTMFGDCIINFVIKQG-----------SKKETRVDVEEEKSEEV--GTDGNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVIAVVMIWD 815
            STF  GVSPYFYRWNESFLLLGTQF+GG+FL T+++HFLSD+NETF+ L  K YP+AFMLA+AGY LTM  D  + FV               S+++  V V+EE   E+  G D +    RTS  GDT LLI ALCFHS+FEGIAIG+S TK +AWRNLWTISLHK+FAA+AMGIALL++IPKRPF LT  YSFAF ISSPIGVGIGI I+AT+QG   DW YAISMGLACGVF+YVA+NHLI+KG+KP+ +CYFD P +KF+AV  GV +++VVMIWD
Sbjct:   74 STFLAGVSPYFYRWNESFLLLGTQFSGGIFLATALIHFLSDANETFRGLKHKEYPYAFMLAAAGYCLTMLADVAVAFVAAGSNNNHVGASVGESREDDDVAVKEEGRREIKSGVDVSQALIRTSGFGDTALLIFALCFHSIFEGIAIGLSDTKSDAWRNLWTISLHKVFAAVAMGIALLKLIPKRPFFLTVVYSFAFGISSPIGVGIGIGINATSQGAGGDWTYAISMGLACGVFVYVAVNHLISKGYKPREECYFDKPIYKFIAVFLGVALLSVVMIWD 353          
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: ZIP11_ARATH (Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP11 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 5.822e-92
Identity = 169/276 (61.23%), Postives = 211/276 (76.45%), Query Frame = 3
Query:   12 VSTFAGGVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLT--------SKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGTDGNPVFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVIAVVMIWD 815
            V TF  GVSPYF +W++ FL+LGTQFAGGVFL T++MHFLSD++ETF+ L         S +YPFA+MLA AG++LTM  D +I  +  + ++ +  +  E++ ++   T         +SIGD+ILLI+ALCFHSVFEGIAIG+S TK +AWR LWTI+LHKIFAAIAMGIALLRMIP RP   +  YSFAFAISSPIGV IGI IDATTQG IADWI+A+SM LACGVF+YV++NHL+AKG++P  K + D P +KFLAVL GV VIA+VMIWD
Sbjct:   58 VLTFISGVSPYFLKWSQGFLVLGTQFAGGVFLATALMHFLSDADETFRGLLTAEGESEPSPAYPFAYMLACAGFMLTMLADSVIAHIYSK-TQNDLELQGEDKSNQRSATT-------ETSIGDSILLIVALCFHSVFEGIAIGISETKSDAWRALWTITLHKIFAAIAMGIALLRMIPDRPLFSSITYSFAFAISSPIGVAIGIVIDATTQGSIADWIFALSMSLACGVFVYVSVNHLLAKGYRPNKKVHVDEPRYKFLAVLFGVVVIAIVMIWD 325          
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: S39A1_DANRE (Zinc transporter ZIP1 OS=Danio rerio GN=slc39a1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.376e-15
Identity = 66/257 (25.68%), Postives = 107/257 (41.63%), Query Frame = 3
Query:   87 FAGGVFLGTSMMHFLSD-----SNETFKDLTSKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGTDGNP-------------VFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVIAVV 803
            FAGGVFL   ++  + D       E  K      +P    + + G+   +  + ++     +G + E    +    +      G+P             V F   S   + +L L+L  HSVFEG+AIG+  T  +       I +HK     ++ + L++   K   L    Y   FAI SP+G+GIGI +   T+      I A+  GLA G FIY+    ++     P      + P  K L +L G  ++A +
Sbjct:   51 FAGGVFLSACLLDIIPDYLSDIHGELQKRDLDDGFPLPEFIMACGFFTVLILEKMV-LSCTEGHRNEETAPLLAPAAPNGHAHGHPSVNDLEGSGHHVHVDFHAHSSFRSFMLFLSLSLHSVFEGLAIGLQTTNAKVLEICIAILVHKSIIVFSLSVKLVQSAVKP--LWVVLYVTVFAIMSPLGIGIGIVV-IETERQAGGLIQAVLEGLAAGTFIYITFLEIL-----PHELNSSERPLLKVLFLLCGFSIMAAL 298          
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: S39A1_TAKRU (Zinc transporter ZIP1 OS=Takifugu rubripes GN=slc39a1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.858e-14
Identity = 73/265 (27.55%), Postives = 115/265 (43.40%), Query Frame = 3
Query:   57 NESFLLLGTQFAGGVFLGTSMMH----FLSDSN-ETFKDLTSKSYPFAFMLASAGYLLTMFGDCII-NFVIKQGSKKETRVDVEEEKSEEVGTDGNP-----------VFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPF----FKFLAVLSGVG 788
            + + L L + FAGGVFL    +     +LSD N E        S+P    + +AG+   +  + I+ N    + + +E    + E KS      G+            V F+  S   + +L L+L  HS+FEG+AIG+  T  +       I +HK     ++ + L++     P L  AAY   FA+ SP+G+ IGI++    Q      I AI  G A G F+Y+    ++        K      F    F  +A LS +G
Sbjct:   41 HRTVLSLISCFAGGVFLSACFLDIIPDYLSDINTELHARQLETSFPLPEFIMAAGFFTVLILERIVLNCKEMRATHEERTTLIPERKSGHGHGHGDGPDPESSGHHVHVDFQAHSPFRSFMLFLSLSLHSIFEGLAIGLQTTDPKVVEICIAILVHKSIIVFSLAVKLVQ--SAIPPLWVAAYIGVFALMSPVGIAIGISV-MEAQLAAGPLIQAILEGFAAGTFVYITFLEILPHELNSPGKQLLKVLFLLLGFSIMAALSFLG 302          
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: ZNTD_DICDI (Protein zntD OS=Dictyostelium discoideum GN=zntD PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.366e-14
Identity = 55/162 (33.95%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  330 VFFRTSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRP-FLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVIAVVMIW 812
            V  + S+I    +L++AL  HS+FEG+A+GV +++   +  L  I  HKI A+ A+GI+ +    ++P FL      F F+++SPIG  +G+ I     G     +  I  G+A G F+YVA+  +I K     +    D     FL +L G   +AVV IW
Sbjct:  527 VVTKKSNILLPFILVIALSIHSLFEGLAMGVQSSEIRVFDILIAIFAHKILASFALGISTITSSNEKPSFLKLFLLVFVFSLTSPIGSILGMVI--VGSGVTGSMVPPILQGIASGTFLYVAVVEIIPKELSHDSN---DILIKSFLLLL-GFSGMAVVAIW 682          
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: S39A2_HUMAN (Zinc transporter ZIP2 OS=Homo sapiens GN=SLC39A2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.039e-13
Identity = 67/302 (22.19%), Postives = 121/302 (40.07%), Query Frame = 3
Query:    9 LVSTFAGGVSPYFYRW----------NESFLLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTSK----------------------SYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGTDGNPVFFRTSSIGD--TILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVIAVVMIW 812
            L  T   G++P  ++W               LLG   + GVFLG   MH  +++ E  +    K                       YP+  ++ S G+ L  F + +       G+   + V  EE     +    +     + S G    ++L+L+L FHSVFEG+A+G+  T     +    +  HK      +G+ L+ +     + + +      A+ SP+G+ +G+A+             A+  G+A G F+YV    ++     P+     +AP  K+  V +G   +A + +W
Sbjct:   16 LALTLGCGLTPICFKWFQIDAARGHHRRVLRLLGC-ISAGVFLGAGFMHMTAEALEEIESQIQKFMVQNRSASERNSSGDADSAHMEYPYGELIISLGFFLVFFLESLA-LQCCPGAAGGSTVQDEEWGGAHIFELHSHGHLPSPSKGPLRALVLLLSLSFHSVFEGLAVGLQPTVAATVQLCLAVLAHKGLVVFGVGMRLVHLGTSSRWAVFSI--LLLALMSPLGLAVGLAVTGGDSEGGRGLAQAVLEGVAAGTFLYVTFLEIL-----PRELASPEAPLAKWSCVAAGFAFMAFIALW 308          
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: IRT2_ARATH (Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12
Identity = 83/311 (26.69%), Postives = 138/311 (44.37%), Query Frame = 3
Query:    9 LVSTFAGGVSPYFYRWNESFL-------LLGTQFAGGVFLGTSMMHFLSDSNETFKDLTSK--------SYPFAFMLASAGYLLTMFGDCIINFVI----KQGSKKETRVDVEEEKS-EEVG---TDGNPVFFRTSSIGD-------TILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLR--MIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLAC--GVFIYVAINHLIAKGF---------KPQNKCYFDAPFFKFLAVLSGVGVIAVVMIW 812
            L ++  G  SP F R+  SFL       ++   F+ G+ LGT  MH L DS   F+ L+SK         +PFA  +A    L+T+  D I   +       G   +    +++EK+   VG   + G+ V   T   G         ++L + + FHSV  G+++G +         +  +  H +F  I +G  +L+      + FL+    +F F  ++P G+ +GIA+ +  + +    +  I +  AC  G+ IY+A+  L+A  F         K Q KC        F A L G  V++VV +W
Sbjct:   55 LTTSLIGVTSPLFSRYI-SFLRPDGNGFMIVKCFSSGIILGTGFMHVLPDS---FEMLSSKCLSDNPWHKFPFAGFVAMMSGLVTLAIDSITTSLYTGKNSVGPVPDEEYGIDQEKAIHMVGHNHSHGHGVVLATKDDGQLLRYQVIAMVLEVGILFHSVVIGLSLGATNDSCTIKGLIIALCFHHLFEGIGLGGCILQADFTNVKKFLM----AFFFTGTTPCGIFLGIALSSIYRDNSPTALITIGLLNACSAGMLIYMALVDLLATEFMGSMLQGSIKLQIKC--------FTAALLGCAVMSVVAVW 349          
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: S39A1_BOVIN (Zinc transporter ZIP1 OS=Bos taurus GN=SLC39A1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12
Identity = 65/274 (23.72%), Postives = 121/274 (44.16%), Query Frame = 3
Query:   30 GVSPYFYRWNESFLLLGTQFAGGVFLGTSMMHFLSDS----NETFKDL-TSKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGT-DGNPVFFR----------TSSIGDTI---LLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVI 794
            G +P      +  L L + FAGGVFL T ++  L D     +E    L  +  +P    + + G+ L +  +      I    K+++     EE    +GT +G P  +            SS    +   +L+ +L  HSVFEG+A+G+   +  A      + LHK   A+++ + LL+   +    + A     F+  +P+G+G+G A+ A + G +     ++  G+A G F+Y+    ++     PQ     +    K + +L+G  ++
Sbjct:   56 GANPEASASRQKALSLVSCFAGGVFLATCLLDLLPDYLGAIDEALAALHVTLQFPLQEFILAMGFFLVLVME-----QITLAYKEQSGPPPREETRALLGTVNGGPQHWHDGLGVPQAGGASSAPSALRACVLVFSLALHSVFEGLAVGLQRDQARAMELCLALLLHKGILAVSLSLRLLQSHLRAQ--VVAGCGILFSCMTPLGIGLGTAL-AESAGPLHQLAQSVLEGMAAGTFLYITFLEIL-----PQELATSEQRILKVILLLAGFALL 316          
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: S39A1_HUMAN (Zinc transporter ZIP1 OS=Homo sapiens GN=SLC39A1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12
Identity = 61/261 (23.37%), Postives = 114/261 (43.68%), Query Frame = 3
Query:   69 LLLGTQFAGGVFLGTSMMHFLSDSNETFKDLTSK-----SYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGT-DGNPVFFR-------------TSSIGDTILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVI 794
            L L + FAGGVFL T ++  L D      +  +       +P    + + G+ L +  +      I    K+++     EE    +GT +G P  +              T S     +L+ +L  HSVFEG+A+G+   +  A      + LHK   A+++ + LL+   +    + A     F+  +P+G+G+G A+ A + G +     ++  G+A G F+Y+    ++     PQ     +    K + +L+G  ++
Sbjct:   69 LSLVSCFAGGVFLATCLLDLLPDYLAAIDEALAALHVTLQFPLQEFILAMGFFLVLVME-----QITLAYKEQSGPSPLEETRALLGTVNGGPQHWHDGPGVPQASGAPATPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLRAQ--VVAGCGILFSCMTPLGIGLGAAL-AESAGPLHQLAQSVLEGMAAGTFLYITFLEIL-----PQELASSEQRILKVILLLAGFALL 316          
BLAST of FC876852 vs. ExPASy Swiss-Prot
Match: S39A1_MOUSE (Zinc transporter ZIP1 OS=Mus musculus GN=Slc39a1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.782e-12
Identity = 64/261 (24.52%), Postives = 116/261 (44.44%), Query Frame = 3
Query:   69 LLLGTQFAGGVFLGTSMMHFLSDS----NETFKDL-TSKSYPFAFMLASAGYLLTMFGDCIINFVIKQGSKKETRVDVEEEKSEEVGT-DGNPVFFRTS----SIGDT---------ILLILALCFHSVFEGIAIGVSATKGEAWRNLWTISLHKIFAAIAMGIALLRMIPKRPFLLTAAYSFAFAISSPIGVGIGIAIDATTQGHIADWIYAISMGLACGVFIYVAINHLIAKGFKPQNKCYFDAPFFKFLAVLSGVGVI 794
            L L + FAGGVFL T ++  L D     +E  + L  +  +P    + + G+ L +  + I     +Q S         EE    +GT +G P  +         G T          +L+ +L  HSVFEG+A+G+   +  A      + LHK   A+++ + LL+   +    + A     F+  +P+G+G+G A+ A + G +     ++  G+A G F+Y+    ++     PQ     +    K + +L+G  ++
Sbjct:   69 LSLVSCFAGGVFLATCLLDLLPDYLAAIDEALEALHVTLQFPLQEFILAMGFFLVLVMEQITLAYKEQSSPPHP-----EETRALLGTVNGGPQHWHDGPGIPQAGGTPAAPSALRACVLVFSLALHSVFEGLAVGLQRDRARAMELCLALLLHKGILAVSLSLRLLQSHLR--VQVVAGCGILFSCMTPLGIGLGAAL-AESAGPLHQLAQSVLEGMAAGTFLYITFLEIL-----PQELATSEQRILKVILLLAGFALL 316          
The following BLAST results are available for this feature:
BLAST of FC876852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ZIP2_ARATH7.331e-10364.64Zinc transporter 2 OS=Arabidopsis thaliana GN=ZIP2... [more]
ZIP11_ARATH5.822e-9261.23Zinc transporter 11 OS=Arabidopsis thaliana GN=ZIP... [more]
S39A1_DANRE3.376e-1525.68Zinc transporter ZIP1 OS=Danio rerio GN=slc39a1 PE... [more]
S39A1_TAKRU2.858e-1427.55Zinc transporter ZIP1 OS=Takifugu rubripes GN=slc3... [more]
ZNTD_DICDI6.366e-1433.95Protein zntD OS=Dictyostelium discoideum GN=zntD P... [more]
S39A2_HUMAN7.039e-1322.19Zinc transporter ZIP2 OS=Homo sapiens GN=SLC39A2 P... [more]
IRT2_ARATH1.568e-1226.69Fe(2+) transport protein 2 OS=Arabidopsis thaliana... [more]
S39A1_BOVIN3.493e-1223.72Zinc transporter ZIP1 OS=Bos taurus GN=SLC39A1 PE=... [more]
S39A1_HUMAN4.562e-1223.37Zinc transporter ZIP1 OS=Homo sapiens GN=SLC39A1 P... [more]
S39A1_MOUSE7.782e-1224.52Zinc transporter ZIP1 OS=Mus musculus GN=Slc39a1 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BB09RM1 EHR Citrus clementina cDNA clone KN0AAN3BB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876852 ID=FC876852; Name=FC876852; organism=Citrus clementina; type=EST; length=831bp
GCACGAGGCTAGTAAGCACTTTTGCTGGTGGCGTTTCGCCTTACTTTTAT
CGATGGAACGAGAGTTTTCTTCTCCTCGGAACCCAATTTGCTGGCGGGGT
TTTTCTTGGGACGTCGATGATGCATTTCTTGAGTGATTCCAATGAAACTT
TCAAAGATTTAACATCCAAAAGTTACCCTTTTGCATTCATGCTAGCATCC
GCGGGTTATCTTTTAACCATGTTCGGTGATTGCATAATCAATTTTGTTAT
AAAGCAGGGTAGCAAAAAAGAAACTAGAGTGGATGTTGAAGAAGAGAAAA
GTGAAGAAGTGGGAACCGATGGTAATCCAGTTTTCTTCAGGACAAGTTCC
ATTGGAGACACCATTCTTCTCATTCTCGCCCTCTGTTTCCACTCAGTTTT
CGAAGGCATTGCCATTGGAGTTTCAGCTACCAAGGGAGAGGCTTGGAGGA
ATCTATGGACGATATCGTTGCACAAAATATTTGCAGCAATTGCAATGGGA
ATTGCACTGCTGAGGATGATACCGAAGAGGCCATTTTTGCTAACTGCGGC
TTACTCATTTGCCTTCGCGATTTCTAGTCCAATTGGTGTGGGGATAGGCA
TTGCCATTGACGCCACAACTCAAGGGCATATTGCTGATTGGATTTATGCA
ATTTCAATGGGACTTGCTTGTGGGGTTTTCATATATGTTGCCATCAACCA
TCTCATTGCCAAAGGGTTTAAGCCACAAAATAAATGTTACTTTGACGCTC
CTTTCTTTAAGTTTCTTGCTGTGCTTAGTGGAGTTGGAGTCATTGCAGTT
GTTATGATTTGGGATTAATCTCTTTTTATTT
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