FC876888
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.507e-16 Identity = 37/88 (42.05%), Postives = 57/88 (64.77%), Query Frame = 2 Query: 401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDERRR 664 PPA+K VE++P + V + +A +C VCL E+E GE R++PC+H FH++CI WLG SCP+CR+++P + E + E+ R Sbjct: 53 PPAAKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDSPEYEEYKQEKER 139
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.571e-16 Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 2 Query: 341 IEGTSSLETLLRNFV--------GKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDER 658 I+ + E LL+N G+ G PPA+K+++EA+ + +V SE E + C VC + +GE +++PC H +H +CI WLG + SCPVCR+++ ++ E +R +R Sbjct: 203 IDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVM-VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEERKKR 315
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.727e-16 Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 2 Query: 401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDERRR 664 PPASK VE++P + V + +A +C VCL E+E GE R++PC+H FH+ CI WLG SCP+CR+++P + + + E+ R Sbjct: 53 PPASKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPDYEEFKQEKAR 139
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16 Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 2 Query: 401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRRE 667 PPA+KA VE++P + S+ E +C VCL E+E E EMPC H FH+NCI WL SCP+CR+++P +++ +K+D+ RR+ Sbjct: 64 PPAAKAVVESLPRTVIRSSKAEL---KCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQ 150
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.276e-15 Identity = 46/122 (37.70%), Postives = 66/122 (54.10%), Query Frame = 2 Query: 308 LVNPLNQGMVVIEGTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVE--EEESGNKRDERRRE 667 L L QG+ + G+ L + PPA+KA V+++P + + + + G +C VCL E+E E REMPCKH FH CI WL SCP+CR ++P + + E K ERRR+ Sbjct: 27 LARSLMQGLDIDSGSFDLSDWDQRL-----PPPAAKAVVQSLPVVIISPEQADK-GVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEFKKDKERRRQ 142
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15 Identity = 37/90 (41.11%), Postives = 58/90 (64.44%), Query Frame = 2 Query: 401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRRE 667 PPA+KA VE++P + ++ + +C VCL E+E E EMPC H FH+NCI WL SCP+CR+++P +++ +K+D+ RR+ Sbjct: 64 PPAAKAVVESLPRTVISSAKADL---KCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQ 150
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15 Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 2 Query: 401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRRE 667 PPA+K +VE +P + S+ E +C VCL E+E E A EMPC H FH+NCI WL SCP+CR+++P +++ +KRD+ R++ Sbjct: 52 PPAAKTAVENLPRTVIRGSQAEL---KCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDTYEEHKRDKARKQ 138
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.842e-15 Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 2 Query: 347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607 G ++ T L N G PPA K ++A+P++ V E E G EC VC E+Y +GE R++PC H FH +CI WL SCPVCR Sbjct: 187 GLDTIITQLLNQFENTGPPPADKEKIQALPTVPVTE-EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 272
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.332e-15 Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2 Query: 347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607 G ++ T L N G PPA ++A+P+I++ E E G EC VC E+Y VGE R++PC H FH +CI WL +CPVCR Sbjct: 184 GLDTIITQLLNQFENTGPPPADNEKIQALPTIQITE-EHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15 Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 2 Query: 401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRRE 667 PPA+K VE +P + S+ E +C VCL E+E E A EMPC H FH++CI WL SCP+CRY++P +++ ++RD+ R++ Sbjct: 52 PPAAKTVVENLPRTVIRGSQAEL---KCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDDDTYEEHRRDKARKQ 138 The following BLAST results are available for this feature:
BLAST of FC876888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876888 ID=FC876888; Name=FC876888; organism=Citrus clementina; type=EST; length=749bpback to top |