FC876888

Overview
NameFC876888
Unique NameFC876888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length749
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10408 contig Ccv1_Contig10408:1..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.507e-16
Identity = 37/88 (42.05%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDERRR 664
            PPA+K  VE++P + V   + +A   +C VCL E+E GE  R++PC+H FH++CI  WLG   SCP+CR+++P +  E    + E+ R
Sbjct:   53 PPAAKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTDSPEYEEYKQEKER 139          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.571e-16
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 2
Query:  341 IEGTSSLETLLRNFV--------GKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDER 658
            I+  +  E LL+N          G+ G PPA+K+++EA+ + +V  SE E +   C VC +   +GE  +++PC H +H +CI  WLG + SCPVCR+++  ++ E   +R +R
Sbjct:  203 IDDAAGYEALLQNLAEGDGGGGGGRRGAPPAAKSAIEALETFEVSSSEGEMVM-VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEERKKR 315          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.727e-16
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEESGNKRDERRR 664
            PPASK  VE++P + V   + +A   +C VCL E+E GE  R++PC+H FH+ CI  WLG   SCP+CR+++P +  +    + E+ R
Sbjct:   53 PPASKKVVESLPKVTVTPEQADA-ALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTDSPDYEEFKQEKAR 139          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_RAT (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRRE 667
            PPA+KA VE++P   +  S+ E    +C VCL E+E  E   EMPC H FH+NCI  WL    SCP+CR+++P +++    +K+D+ RR+
Sbjct:   64 PPAAKAVVESLPRTVIRSSKAEL---KCPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQ 150          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.276e-15
Identity = 46/122 (37.70%), Postives = 66/122 (54.10%), Query Frame = 2
Query:  308 LVNPLNQGMVVIEGTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVE--EEESGNKRDERRRE 667
            L   L QG+ +  G+  L    +        PPA+KA V+++P + +   + +  G +C VCL E+E  E  REMPCKH FH  CI  WL    SCP+CR ++P +  + E   K  ERRR+
Sbjct:   27 LARSLMQGLDIDSGSFDLSDWDQRL-----PPPAAKAVVQSLPVVIISPEQADK-GVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELPTDNADYEEFKKDKERRRQ 142          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15
Identity = 37/90 (41.11%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRRE 667
            PPA+KA VE++P   +  ++ +    +C VCL E+E  E   EMPC H FH+NCI  WL    SCP+CR+++P +++    +K+D+ RR+
Sbjct:   64 PPAAKAVVESLPRTVISSAKADL---KCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDSYEEHKKDKARRQ 150          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_BOVIN (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus GN=RNF181 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.666e-15
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRRE 667
            PPA+K +VE +P   +  S+ E    +C VCL E+E  E A EMPC H FH+NCI  WL    SCP+CR+++P +++    +KRD+ R++
Sbjct:   52 PPAAKTAVENLPRTVIRGSQAEL---KCPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDDDTYEEHKRDKARKQ 138          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.842e-15
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            G  ++ T L N     G PPA K  ++A+P++ V E E    G EC VC E+Y +GE  R++PC H FH +CI  WL    SCPVCR
Sbjct:  187 GLDTIITQLLNQFENTGPPPADKEKIQALPTVPVTE-EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 272          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.332e-15
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  347 GTSSLETLLRNFVGKDGQPPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCR 607
            G  ++ T L N     G PPA    ++A+P+I++ E E    G EC VC E+Y VGE  R++PC H FH +CI  WL    +CPVCR
Sbjct:  184 GLDTIITQLLNQFENTGPPPADNEKIQALPTIQITE-EHVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCR 269          
BLAST of FC876888 vs. ExPASy Swiss-Prot
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens GN=RNF181 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.270e-15
Identity = 38/90 (42.22%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  401 PPASKASVEAMPSIKVGESEEEALGGECVVCLEEYEVGEVAREMPCKHKFHANCIEKWLGIQGSCPVCRYKMPVEEEE-SGNKRDERRRE 667
            PPA+K  VE +P   +  S+ E    +C VCL E+E  E A EMPC H FH++CI  WL    SCP+CRY++P +++    ++RD+ R++
Sbjct:   52 PPAAKTVVENLPRTVIRGSQAEL---KCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDDDTYEEHRRDKARKQ 138          
The following BLAST results are available for this feature:
BLAST of FC876888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RN181_XENTR1.507e-1642.05E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
CIP8_ARATH2.571e-1635.09E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_XENLA5.727e-1642.05E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
RN181_RAT9.769e-1643.33E3 ubiquitin-protein ligase RNF181 OS=Rattus norve... [more]
RN181_DANRE1.276e-1537.70E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]
RN181_MOUSE1.666e-1541.11E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
RN181_BOVIN1.666e-1543.33E3 ubiquitin-protein ligase RNF181 OS=Bos taurus G... [more]
RN126_MOUSE2.842e-1544.83RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
R126A_XENLA6.332e-1543.68RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
RN181_HUMAN8.270e-1542.22E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3BD12RM1 EHR Citrus clementina cDNA clone KN0AAN3BD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876888 ID=FC876888; Name=FC876888; organism=Citrus clementina; type=EST; length=749bp
GCACGAGGCTTCTTCTCCTTTTTTTTTTCCTCTTAAAAATCGGATTGTTG
ATCACCCTAGTACAGATCTCTCAAAAAAGATTTGATCTTTCTGTCAAAAT
TTCATTCTTTCGATGTCCTCTGAAGCTGAAGCTACTGATGTCTCATCGCT
GTTTGAGAGACTGTTAAGTCACAGAGACATGTCTTTGTTTCTACCCTTTG
TCTTAGGCTTCACAAGCAGCGTCTCCACAGGTGAAAGTTCCGAGAATTCT
CAGAACCCGGATGGGGAAACCCCTCATACAAACAGAAGTTCAAGCGAAAG
AATCATTCTCGTCAATCCTCTCAATCAGGGCATGGTAGTGATTGAAGGGA
CTTCAAGTTTAGAGACTCTGCTGAGAAATTTCGTTGGTAAAGATGGCCAG
CCTCCTGCTTCAAAGGCATCGGTTGAGGCCATGCCAAGTATCAAAGTCGG
TGAAAGCGAAGAGGAAGCTCTTGGTGGTGAGTGTGTCGTGTGTTTAGAGG
AGTATGAGGTTGGGGAGGTGGCGAGAGAGATGCCATGTAAGCACAAGTTT
CATGCAAACTGTATAGAGAAGTGGCTTGGGATTCAGGGGTCGTGTCCTGT
TTGTAGATACAAGATGCCTGTTGAAGAAGAGGAAAGTGGCAACAAAAGAG
ATGAGCGAAGGAGAGAAATTTGGGTTAGTTTTTCAATCAGTGGTGGTGGT
AGAAGAAGTGGTGAGAATTCAAATCAAAACGAAAGTACTTCTCCTTCAA
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