FC876990

Overview
NameFC876990
Unique NameFC876990
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length746
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876990_ssr172 microsatellite FC876990_ssr172:172..181. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14563 contig Ccv1_Contig14563:524..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876990 vs. ExPASy Swiss-Prot
Match: POT6_ARATH (Potassium transporter 6 OS=Arabidopsis thaliana GN=POT6 PE=2 SV=1)

HSP 1 Score: 363.614 bits (932), Expect = 6.341e-100
Identity = 175/241 (72.61%), Postives = 202/241 (83.82%), Query Frame = 3
Query:    3 LMSLVIVLCWQKSVXXXXXXXXXXGTIEALYFSASLIKFLEGAWVPIALAFIFLIVMCVWHYGTLKKYEFDLQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGHIGPRQYRIYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSGSVGINGANEDPYKDDDKMTVVGTCSSHTEGIQMSEDDVIVNIDSPGTSELR 725
            LMSLVIVLCW KSV          GTIE+LYFSASLIKFLEGAWVPIALAF FL+ MC WHYGTLK+YE+D+QNKVS+NWLLSL  +LGI RVRG+GLIHTELVSG+PAIFSHFVTNLPAFHQVLVFLC+KSVPVPHVRP+ERFLVG IGP+++RIYRCIVR+GYRDVHKDD EFE DLVCSIAEFIR+ +     A E   +DDD+M+VVGTCS++ +GI+   +  I + D PGTSE+R
Sbjct:  440 LMSLVIVLCWHKSVIFAIVFVVFFGTIESLYFSASLIKFLEGAWVPIALAFCFLLAMCTWHYGTLKRYEYDVQNKVSVNWLLSLSQTLGIARVRGLGLIHTELVSGVPAIFSHFVTNLPAFHQVLVFLCVKSVPVPHVRPQERFLVGRIGPKEFRIYRCIVRFGYRDVHKDDFEFEGDLVCSIAEFIRTEAETAATAAETNGEDDDRMSVVGTCSTYMQGIEDHYESDIDDPDKPGTSEIR 680          
BLAST of FC876990 vs. ExPASy Swiss-Prot
Match: HAK25_ORYSJ (Potassium transporter 25 OS=Oryza sativa subsp. japonica GN=HAK25 PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 3.370e-93
Identity = 175/249 (70.28%), Postives = 195/249 (78.31%), Query Frame = 3
Query:    3 LMSLVIVLCWQKSVXXXXXXXXXXGTIEALYFSASLIKFLEGAWVPIALAFIFLIVMCVWHYGTLKKYEFDLQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGHIGPRQYRIYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSGSVGINGANEDPYKDDDKMTVVGTCSSHTEGIQM-SEDDVIVNIDSPGTSELREIQSPTQ 746
            LMSLVIVLCW KS+          GTIE LYFSASL+KF EGAWVPI L+FIF+IVMCVWHYGT+KKYEFD QNKVS+NWLL+LGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLC+KSVPVPHV+PEERFLVG IGP++YR+YR IVRYGYRDV KDD+EFEKDLV SIAEFIRSG    NG  ED  K  +K+      SS + GI +  ED  +    SP      +I SP +
Sbjct:  439 LMSLVIVLCWNKSIFLALGFLIFFGTIEVLYFSASLVKFHEGAWVPITLSFIFMIVMCVWHYGTIKKYEFDFQNKVSVNWLLNLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCVKSVPVPHVQPEERFLVGRIGPKEYRLYRVIVRYGYRDVQKDDIEFEKDLVSSIAEFIRSGDSHHNGVLEDTDKSCEKL------SSISNGIPLWMEDGEVDASASPHKETDTQIISPNR 681          
BLAST of FC876990 vs. ExPASy Swiss-Prot
Match: HAK10_ORYSJ (Potassium transporter 10 OS=Oryza sativa subsp. japonica GN=HAK10 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.853e-92
Identity = 166/241 (68.88%), Postives = 190/241 (78.84%), Query Frame = 3
Query:    3 LMSLVIVLCWQKSVXXXXXXXXXXGTIEALYFSASLIKFLEGAWVPIALAFIFLIVMCVWHYGTLKKYEFDLQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGHIGPRQYRIYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSGSVGI--------------NGANEDPYKDDDKMTVVGTCSSHTEGIQMSEDD 683
            LMSLVIVLCW KS+          GTIEALYFSASLIKF EGAWVPI LAFIF+ +MC+WHYGT+KKYEFDLQNKVSINWLL L P+LGIVRVRGIGLIHTEL SGIPAIFSHFVTNLPAFHQVL+FLCIK+VP+PHV PEERFLVG IGP++YRIYRCIVRYGY DVHKDD EFEK+LVCS+AEFIRSG+                  GA E   +++++M+V+ + S     I+M E+D
Sbjct:  470 LMSLVIVLCWHKSIFLAFGFIIFFGTIEALYFSASLIKFREGAWVPIVLAFIFMAIMCIWHYGTIKKYEFDLQNKVSINWLLGLSPNLGIVRVRGIGLIHTELDSGIPAIFSHFVTNLPAFHQVLIFLCIKNVPIPHVSPEERFLVGRIGPKEYRIYRCIVRYGYHDVHKDDQEFEKELVCSVAEFIRSGAAAAADAAASSKPKNVCGGGAEESEKEEEERMSVIPSGS-----IRMMEED 705          
BLAST of FC876990 vs. ExPASy Swiss-Prot
Match: POT8_ARATH (Potassium transporter 8 OS=Arabidopsis thaliana GN=POT8 PE=2 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 2.670e-90
Identity = 161/230 (70.00%), Postives = 192/230 (83.48%), Query Frame = 3
Query:    3 LMSLVIVLCWQKSVXXXXXXXXXXGTIEALYFSASLIKFLEGAWVPIALAFIFLIVMCVWHYGTLKKYEFDLQNKVSINWLLSL--GPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGHIGPRQYRIYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSGS-VGINGANEDPYKDDDKMTVVGTCSSHTEGIQMSEDD 683
            LMSLVIVLCW+KS           GTIE LYFSASLIKFLEGAWVP+AL+FIFL++M VWHYGTLK+YEFD+QNKVSINWLL+L    +LGIVRV GIG+I+TELVSGIPAIFSHF+TNLPAFHQV+VFLC+KSVPVPHV+PEERFLVG +GP++YR+YRCI RYGYRDVHKDD+EFE DL+CSIAEFIRS   +  +   E+    ++++TVV   SS+ EG+Q+ EDD
Sbjct:  440 LMSLVIVLCWRKSSLYALAFIFFFGTIEVLYFSASLIKFLEGAWVPVALSFIFLLIMYVWHYGTLKRYEFDVQNKVSINWLLTLFGSSNLGIVRVHGIGVINTELVSGIPAIFSHFITNLPAFHQVVVFLCVKSVPVPHVKPEERFLVGRVGPKEYRLYRCIARYGYRDVHKDDVEFENDLICSIAEFIRSDKPLNYSPDPENESGINERLTVVAASSSNLEGVQIYEDD 669          
BLAST of FC876990 vs. ExPASy Swiss-Prot
Match: HAK24_ORYSJ (Potassium transporter 24 OS=Oryza sativa subsp. japonica GN=HAK24 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.050e-86
Identity = 162/248 (65.32%), Postives = 193/248 (77.82%), Query Frame = 3
Query:    3 LMSLVIVLCWQKSVXXXXXXXXXXGTIEALYFSASLIKFLEGAWVPIALAFIFLIVMCVWHYGTLKKYEFDLQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGHIGPRQYRIYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSGSVGINGANEDPYKDDDKMTVVGTCSSHTEGIQMSEDD-VIVNIDSPGTSELREIQSPT 743
            LMSLVI+LCW KS+          G IE +YF+ASL+KF EGAWVP+ L+FIF++VMCVWHYGT KKYEFD+QNKVSI+WLL++GPSLGIVRVRGIGLIHTEL+SGIPAIFSHFVTNLPAFHQVLVFLCIKSV VPHV+PEERFLVG IGP++YRIYR IVRYGYRDV KDD+EFEKDLV SIAEFIR        +N++ + D    +  G  S  ++G+ + E++      DS G+S  +EI   T
Sbjct:  437 LMSLVILLCWNKSIVYALSFLLFFGAIEVIYFAASLVKFHEGAWVPVTLSFIFMMVMCVWHYGTKKKYEFDVQNKVSISWLLNIGPSLGIVRVRGIGLIHTELMSGIPAIFSHFVTNLPAFHQVLVFLCIKSVSVPHVQPEERFLVGRIGPKKYRIYRVIVRYGYRDVQKDDVEFEKDLVSSIAEFIRCAD-----SNQNSFMDGASHSCEG-LSFISKGLPLEEEEGEFDGSDSTGSSAHKEINPNT 678          
BLAST of FC876990 vs. ExPASy Swiss-Prot
Match: HAK7_ORYSJ (Potassium transporter 7 OS=Oryza sativa subsp. japonica GN=HAK7 PE=2 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 7.305e-72
Identity = 135/248 (54.44%), Postives = 178/248 (71.77%), Query Frame = 3
Query:    3 LMSLVIVLCWQKSVXXXXXXXXXXGTIEALYFSASLIKFLEGAWVPIALAFIFLIVMCVWHYGTLKKYEFDLQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGHIGPRQYRIYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSGSVGINGANEDPYKDDD-KMTVVGTCSSHTEGIQMSEDDVIVNIDSPGTSELREIQSPT 743
            LM+LVI+  WQK++          G+IE +Y SA++ K  +G W PI  AF+F++VM VWHYG+ +KY FDLQNKVS+ W+L+LGPSLGIVRV GIGLI+TELV+G+P+IFSHFVTNLPAFHQVLVF+C+KSVPVP V  +ER+L+G IGPR+YR+YRCIVRYGY+DV KDD  FE  LV SIA+FI+  +     A+   Y+  + +M V+ T  +   G+ M +     N ++ GTS  R  +S T
Sbjct:  463 LMALVIIFVWQKNILLALLFVVAFGSIEVVYLSAAVTKVPQGGWAPIVFAFVFMLVMYVWHYGSRRKYLFDLQNKVSMKWILTLGPSLGIVRVPGIGLIYTELVTGVPSIFSHFVTNLPAFHQVLVFVCVKSVPVPFVPEDERYLIGRIGPREYRMYRCIVRYGYKDVQKDDENFENHLVMSIAKFIQMEAE--EAASSGSYESSEGRMAVIHTEDTTGTGLVMRDS----NNEASGTSLTRSSRSET 704          
BLAST of FC876990 vs. ExPASy Swiss-Prot
Match: POT4_ARATH (Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2)

HSP 1 Score: 266.929 bits (681), Expect = 8.077e-71
Identity = 125/220 (56.82%), Postives = 161/220 (73.18%), Query Frame = 3
Query:    6 MSLVIVLCWQKSVXXXXXXXXXXGTIEALYFSASLIKFLEGAWVPIALAFIFLIVMCVWHYGTLKKYEFDLQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGHIGPRQYRIYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSGSVGINGANEDPYKDDDKMTVVGTCSSHTEGI 665
            M+LVIV+ WQKS             IE +Y SA+L+K  EG WVP  L FIF+I M VWHYGT +KY FDL NKVS+ WLL LGPSLGIVRV GIGL+++EL +G+PAIFSHFVTNLPAFH+V+VF+C+KSVPVPHV PEERFL+G + P+ YR+YRCIVRYGY+D+ ++D +FE  LV SIAEFI+  +  +  +  +   +D +M V+ +  S +  I
Sbjct:  438 MALVIVVVWQKSCFLAALFLGTLWIIEGVYLSAALMKVTEGGWVPFVLTFIFMIAMYVWHYGTRRKYSFDLHNKVSLKWLLGLGPSLGIVRVPGIGLVYSELATGVPAIFSHFVTNLPAFHKVVVFVCVKSVPVPHVSPEERFLIGRVCPKPYRMYRCIVRYGYKDIQREDGDFENQLVQSIAEFIQMEASDLQSSASESQSNDGRMAVLSSQKSLSNSI 657          
BLAST of FC876990 vs. ExPASy Swiss-Prot
Match: POT2_ARATH (Potassium transporter 2 OS=Arabidopsis thaliana GN=POT2 PE=1 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 2.598e-69
Identity = 127/188 (67.55%), Postives = 147/188 (78.19%), Query Frame = 3
Query:    3 LMSLVIVLCWQKSVXXXXXXXXXXGTIEALYFSASLIKFLEGAWVPIALAFIFLIVMCVWHYGTLKKYEFDLQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGHIGPRQYRIYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIR 566
            L SLVIVLCW K            G+IE LYFSASL KF EGAW+PI L+ IF+I+M VWHY T+KKYEFDLQNKVS+ WLL+LGPSLGI RV GIGL+ T+L SGIPA FS FVTNLPAFH+VLVF+C+KSVPVP V P ER+LVG +GP  +R YRCIVRYGYRDVH+D   FE +LV  +A+FIR
Sbjct:  436 LTSLVIVLCWHKPPILALAFLLFFGSIELLYFSASLTKFREGAWLPILLSLIFMIIMFVWHYTTIKKYEFDLQNKVSLEWLLALGPSLGISRVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRVLVFVCVKSVPVPFVPPAERYLVGRVGPVDHRSYRCIVRYGYRDVHQDVDSFETELVSKLADFIR 623          
BLAST of FC876990 vs. ExPASy Swiss-Prot
Match: HAK2_ORYSJ (Probable potassium transporter 2 OS=Oryza sativa subsp. japonica GN=HAK2 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.788e-69
Identity = 123/248 (49.60%), Postives = 175/248 (70.56%), Query Frame = 3
Query:    3 LMSLVIVLCWQKSVXXXXXXXXXXGTIEALYFSASLIKFLEGAWVPIALAFIFLIVMCVWHYGTLKKYEFDLQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGHIGPRQYRIYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSGSVGINGANEDPYKDDDKMTVVGTCSSHTEGIQMSEDDVI---VNIDSPGTSELREIQS 737
            LM+L+++  WQK++          G++E +Y S+SL+K  +G WVP+ LA IF+ VM +WHYGT KKY++DLQNKVS+ ++LSLGPSL +VRV GIGLI+TELV+G+P IF+HF TNLPAFH+VLVFLC+KSVPVP+V P+ER+LVG IGPR YR+YRCIVRYGY+DV +DD  FE  LV +I +FI   +   + +      ++ +M V+ T   +   + + + + +   + + S  +  LR +QS
Sbjct:  435 LMALIMIFVWQKNIIFALSFFLLFGSVEVVYLSSSLMKVTQGGWVPLVLALIFMSVMYIWHYGTRKKYQYDLQNKVSMRYILSLGPSLDVVRVPGIGLIYTELVTGVPNIFTHFTTNLPAFHEVLVFLCVKSVPVPYVSPDERYLVGRIGPRAYRMYRCIVRYGYKDVQRDDDNFENMLVMNIGKFIMMEAEDASSSASYDTANEGRMAVITTSDDYDSPLAVRDSNDLADSMTMRSTKSESLRSLQS 682          
BLAST of FC876990 vs. ExPASy Swiss-Prot
Match: HAK9_ORYSJ (Probable potassium transporter 9 OS=Oryza sativa subsp. japonica GN=HAK9 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.289e-68
Identity = 127/222 (57.21%), Postives = 162/222 (72.97%), Query Frame = 3
Query:    3 LMSLVIVLCWQKSVXXXXXXXXXXGTIEALYFSASLIKFLEGAWVPIALAFIFLIVMCVWHYGTLKKYEFDLQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPVPHVRPEERFLVGHIGPRQYRIYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSGSV---------GINGANEDPYKDDDKMTVVGT 641
            L SLVI+LCW +S           G+IE LYFSASLIKF EGAW+PI LA I + VM +WH+ T+KKYEFDL NKV++ WLL+LG  LG+VRV GIGL++T+L SG+PA FS FVTNLPAFH+VLVF+C+KSVPVPHV P ER+LVG +GP  +R YRCIVRYGYRDVH+D   FE +LV S+A FI+  ++         G    ++  Y+ ++ +TV+GT
Sbjct:  436 LTSLVIMLCWHRSPALALVFFLFFGSIEVLYFSASLIKFREGAWLPIMLALILMAVMFIWHHTTIKKYEFDLHNKVTLEWLLALGDKLGMVRVPGIGLVYTDLTSGVPANFSRFVTNLPAFHRVLVFVCVKSVPVPHVLPAERYLVGRVGPAGHRSYRCIVRYGYRDVHQDVDSFEAELVESLATFIKLDALYHRCSDAGSGSEQLDDGRYERENALTVIGT 657          
The following BLAST results are available for this feature:
BLAST of FC876990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
POT6_ARATH6.341e-10072.61Potassium transporter 6 OS=Arabidopsis thaliana GN... [more]
HAK25_ORYSJ3.370e-9370.28Potassium transporter 25 OS=Oryza sativa subsp. ja... [more]
HAK10_ORYSJ2.853e-9268.88Potassium transporter 10 OS=Oryza sativa subsp. ja... [more]
POT8_ARATH2.670e-9070.00Potassium transporter 8 OS=Arabidopsis thaliana GN... [more]
HAK24_ORYSJ1.050e-8665.32Potassium transporter 24 OS=Oryza sativa subsp. ja... [more]
HAK7_ORYSJ7.305e-7254.44Potassium transporter 7 OS=Oryza sativa subsp. jap... [more]
POT4_ARATH8.077e-7156.82Potassium transporter 4 OS=Arabidopsis thaliana GN... [more]
POT2_ARATH2.598e-6967.55Potassium transporter 2 OS=Arabidopsis thaliana GN... [more]
HAK2_ORYSJ5.788e-6949.60Probable potassium transporter 2 OS=Oryza sativa s... [more]
HAK9_ORYSJ1.289e-6857.21Probable potassium transporter 9 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3CC02RM1 EHR Citrus clementina cDNA clone KN0AAN3CC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876990 ID=FC876990; Name=FC876990; organism=Citrus clementina; type=EST; length=746bp
GCCTAATGTCTCTAGTAATCGTCCTATGCTGGCAGAAGAGTGTCTTTTTC
GCAATATGTTTTGTGTTCTTCTTTGGCACAATTGAAGCTCTTTACTTCTC
AGCTTCTCTCATCAAGTTCCTCGAAGGAGCGTGGGTTCCAATTGCCCTTG
CATTTATCTTCCTGATTGTCATGTGTGTGTGGCACTATGGCACCCTCAAA
AAGTACGAGTTTGATCTGCAAAACAAGGTCTCCATCAACTGGCTACTTAG
TTTAGGTCCTAGCCTAGGCATTGTACGGGTTCGTGGCATTGGCCTCATAC
ACACTGAGCTTGTCTCTGGAATCCCTGCAATCTTCTCCCACTTTGTCACC
AACCTTCCGGCCTTCCACCAGGTTTTAGTCTTCCTTTGTATTAAATCCGT
GCCAGTTCCTCATGTTAGACCAGAGGAGAGGTTCCTAGTTGGTCATATTG
GTCCAAGACAGTATAGAATCTATAGGTGCATTGTAAGATATGGATATCGT
GATGTTCACAAAGATGACATGGAATTCGAGAAGGATCTTGTCTGTAGTAT
TGCAGAGTTCATACGCTCAGGAAGTGTTGGAATCAATGGTGCAAATGAAG
ATCCGTATAAAGATGATGACAAAATGACAGTTGTGGGTACATGCTCTAGC
CATACAGAAGGGATTCAAATGAGTGAAGATGATGTCATAGTAAACATAGA
CTCCCCTGGCACGTCAGAATTAAGAGAGATACAGTCGCCAACCCAA
back to top