FC876993

Overview
NameFC876993
Unique NameFC876993
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length632
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876993 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.271e-19
Identity = 51/134 (38.06%), Postives = 70/134 (52.24%), Query Frame = 2
Query:  218 FTESKRLHNLTTLPNKIATTRLRKLVLSGCSKLKKFPEIVGSMECLVELFLDGTAIEELPSSIQXXXXXXXXXXENCTNLVGLPSSMNGLTSLRTLNLFGCFKSKNVLESFDRVESLEGLDSSGTALWNPVSSI 619
            F   K    L  +P+ +    L  L LSGCSKL  FPEI  +++   EL++ GT I+E+PSSI+          EN  +L  LP+S+  L  L TLNL GC   +   +S  R++ L  LD S T +    SSI
Sbjct: 1309 FLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEISPNVK---ELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSI 1439          

HSP 2 Score: 38.891 bits (89), Expect = 2.271e-19
Identity = 19/41 (46.34%), Postives = 24/41 (58.54%), Query Frame = 3
Query:   63 LSKLKIMRLCHSNDLIGTPDLTGLPNLEELDLRGCTRLCDI 185
            L KLK MRL +S+ L   P L+   NLE +DL GC  L  +
Sbjct: 1257 LEKLKKMRLSYSDQLTKIPRLSSATNLEHIDLEGCNSLLSL 1297          
BLAST of FC876993 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.797e-12
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 2
Query:  281 LRKLVLSGCSKLKKFPEIVGSMECLVELFLDGTAIEELPSSI-QXXXXXXXXXXENCTNLVGLPSSMNGLTSLRTLNLFGCFKSKNVLESFDRVESLEGLDSSGTALWNPVSSIFSM 628
            L  L L  C  L+K PEI G M+  +++ + G+ I ELPSSI Q           N  NLV LPSS+  L SL +L++ GC K +++ E    +++L   D+S T +  P SSI  +
Sbjct:  690 LEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRL 806          
The following BLAST results are available for this feature:
BLAST of FC876993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WRK19_ARATH2.271e-1938.06Probable WRKY transcription factor 19 OS=Arabidops... [more]
TMVRN_NICGU4.797e-1237.61TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3CC05RM1 EHR Citrus clementina cDNA clone KN0AAN3CC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876993 ID=FC876993; Name=FC876993; organism=Citrus clementina; type=EST; length=632bp
GCACGAGGGGTATTATGATTCATCCCTTGAATAATTGTGGAGATTTTGTT
TTTGAACAGCCTTTGAGCAAGTTGAAAATCATGAGACTTTGCCATTCCAA
TGACCTGATTGGAACACCAGACTTAACTGGGTTGCCAAATTTAGAGGAGC
TGGATCTTAGAGGATGTACAAGATTGTGTGATATTCACCCATCATTGCTG
CTTCACAAGAACCTTATTTCACTGAATCTAAAAGATTGCACAATCTTACA
ACTCTTCCGAATAAGATTGCCACAACACGTCTAAGAAAACTTGTACTTTC
TGGTTGCTCGAAGCTGAAGAAGTTTCCAGAAATTGTGGGAAGTATGGAAT
GTCTGGTGGAGCTTTTTCTTGATGGAACAGCTATTGAAGAACTGCCATCA
TCAATTCAACTTTTGACTGGACTCATTTTGTTGAATTTGGAAAACTGCAC
AAATCTTGTGGGACTTCCAAGTTCTATGAATGGTTTAACATCTCTTAGAA
CCCTGAATCTCTTTGGCTGCTTCAAATCTAAAAATGTGCTAGAAAGTTTT
GACAGGGTAGAAAGTTTGGAGGGGCTTGATTCAAGTGGAACTGCTTTATG
GAACCCAGTGTCGTCCATTTTTTCTATGCAGA
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