FC877040

Overview
NameFC877040
Unique NameFC877040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877040 vs. ExPASy Swiss-Prot
Match: AB1D_ARATH (ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 5.449e-77
Identity = 137/171 (80.12%), Postives = 155/171 (90.64%), Query Frame = 1
Query:   10 EEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILESVRLSYLLEREEVGWDANLNWEDVLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 522
            +E GSG G+F+VPQRPYTCLGTLRDQIIYPLS+EEAE RA KL+  GE   +  +ILDS+LKTILE+VRL YLLER+  GWDA  NWED+LSLGEQQRLGMARLFFH+PKFG+LDECTNATSVDVEEQLYR+A+DMG+TF+TSSQRPALIPFHSLELRLIDGEGNWELR+I
Sbjct: 1162 KELGSGNGMFFVPQRPYTCLGTLRDQIIYPLSKEEAEKRAAKLYTSGESSTEAGSILDSHLKTILENVRLVYLLERDVGGWDATTNWEDILSLGEQQRLGMARLFFHRPKFGVLDECTNATSVDVEEQLYRVARDMGVTFITSSQRPALIPFHSLELRLIDGEGNWELRSI 1332          

HSP 2 Score: 145.976 bits (367), Expect = 1.501e-34
Identity = 80/161 (49.69%), Postives = 105/161 (65.22%), Query Frame = 1
Query:   34 IFYVPQRPYTCLGTLRDQIIYPL-SREEAELRALKLHGKGEKLVDTTNILDSYLKTILESVRLSYLLEREEVGWDANLNWEDVLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWEL 513
            IFYVPQRPY  +GTLRDQ+IYPL S +E+EL                 + +  +  +L++V L YLL+R +   +  +NW D LSLGEQQRLGMARLF+HKPKF ILDECT+A + D+EE+     + MG + +T S RPAL+ FH + L L DGEG W +
Sbjct:  518 IFYVPQRPYMAVGTLRDQLIYPLTSGQESEL-----------------LTEIGMVELLKNVDLEYLLDRYQP--EKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFAAKVRAMGTSCITISHRPALVAFHDVVLSL-DGEGGWSV 658          
BLAST of FC877040 vs. ExPASy Swiss-Prot
Match: ABCD3_RAT (ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus GN=Abcd3 PE=1 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.159e-35
Identity = 78/163 (47.85%), Postives = 105/163 (64.42%), Query Frame = 1
Query:   34 IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILESVRLSYLLEREEVGWDANLNWEDVLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 522
            +FYVPQRPY  LGTLRDQ+IYP  +E+ + + +                D  LK  L++V+L ++LERE  GWD+  +W DVLS GE+QR+ MARLF+HKP+F ILDECT+A SVDVE+ +Y   + +GIT  T S R +L   H   L + DG GN+E + I
Sbjct:  505 LFYVPQRPYMTLGTLRDQVIYPDGKEDQKKKGIS---------------DQVLKGYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM-DGRGNYEFKKI 650          
BLAST of FC877040 vs. ExPASy Swiss-Prot
Match: ABCD2_HUMAN (ATP-binding cassette sub-family D member 2 OS=Homo sapiens GN=ABCD2 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.159e-35
Identity = 74/164 (45.12%), Postives = 111/164 (67.68%), Query Frame = 1
Query:   34 IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILESVRLSYLLEREEVGWDANLNWEDVLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTIN 525
            +FY+PQRPY  LG+LRDQ+IYP S ++       +H KG          D  L+ IL +V L ++++RE  GWDA ++W+DVLS GE+QR+GMAR+F+HKPK+ +LDECT+A S+DVE ++++ AK  GI+ ++ + RP+L  +H+  L   DGEG W    ++
Sbjct:  543 MFYIPQRPYMSLGSLRDQVIYPDSVDD-------MHDKG--------YTDQDLERILHNVHLYHIVQREG-GWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAKGAGISLLSITHRPSLWKYHT-HLLQFDGEGGWRFEQLD 689          
BLAST of FC877040 vs. ExPASy Swiss-Prot
Match: ABCD3_HUMAN (ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.801e-35
Identity = 79/163 (48.47%), Postives = 104/163 (63.80%), Query Frame = 1
Query:   34 IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILESVRLSYLLEREEVGWDANLNWEDVLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 522
            +FYVPQRPY  LGTLRDQ+IYP  RE+ + + +                D  LK  L++V+L ++LERE  GWD+  +W DVLS GE+QR+ MARLF+HKP+F ILDECT+A SVDVE  +Y   + +GIT  T S R +L   H   L + DG GN+E + I
Sbjct:  505 LFYVPQRPYMTLGTLRDQVIYPDGREDQKRKGIS---------------DLVLKEYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM-DGRGNYEFKQI 650          
BLAST of FC877040 vs. ExPASy Swiss-Prot
Match: ABCD3_MOUSE (ATP-binding cassette sub-family D member 3 OS=Mus musculus GN=Abcd3 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.149e-34
Identity = 78/163 (47.85%), Postives = 103/163 (63.19%), Query Frame = 1
Query:   34 IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILESVRLSYLLEREEVGWDANLNWEDVLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTI 522
            +FYVPQRPY  LGTLRDQ+IYP  +E+ + R +                D  LK  L++V+L ++LERE  GWD+  +W DVLS GE+QR+ MARLF+HKP+F ILDECT+A SVDVE+ +Y   + +GIT  T S    L   H   L + DG GN+E + I
Sbjct:  505 LFYVPQRPYMTLGTLRDQVIYPDGKEDQKKRGIS---------------DQVLKEYLDNVQLGHILEREG-GWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSHTKCLWKHHEYYLHM-DGRGNYEFKKI 650          
BLAST of FC877040 vs. ExPASy Swiss-Prot
Match: ABCD2_RAT (ATP-binding cassette sub-family D member 2 OS=Rattus norvegicus GN=Abcd2 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.368e-34
Identity = 74/164 (45.12%), Postives = 110/164 (67.07%), Query Frame = 1
Query:   34 IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILESVRLSYLLEREEVGWDANLNWEDVLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTIN 525
            +FY+PQRPY  LG+LRDQ+IYP S ++       +H KG          D  L+ IL SV L ++++RE  GWDA ++W+DVLS GE+QR+GMAR+F+HKPK+ +LDECT+A S+DVE ++++ A   GI+ ++ + RP+L  +H+  L   DGEG W    ++
Sbjct:  544 MFYIPQRPYMSLGSLRDQVIYPDSVDD-------MHEKG--------YTDRDLEHILHSVHLYHIVQREG-GWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITHRPSLWKYHT-HLLQFDGEGGWRFEQLD 690          
BLAST of FC877040 vs. ExPASy Swiss-Prot
Match: ABCD1_HUMAN (ATP-binding cassette sub-family D member 1 OS=Homo sapiens GN=ABCD1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.704e-34
Identity = 70/164 (42.68%), Postives = 109/164 (66.46%), Query Frame = 1
Query:   34 IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILESVRLSYLLEREEVGWDANLNWEDVLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTIN 525
            +FY+PQRPY  +G+LRDQ+IYP S E+ + +                  +  L+ IL+ V L ++L+RE  GW+A  +W+DVLS GE+QR+GMAR+F+H+PK+ +LDECT+A S+DVE ++++ AKD GI  ++ + RP+L  +H+  L   DGEG W+   ++
Sbjct:  539 MFYIPQRPYMSVGSLRDQVIYPDSVEDMQRKGYS---------------EQDLEAILDVVHLHHILQREG-GWEAMCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGIALLSITHRPSLWKYHT-HLLQFDGEGGWKFEKLD 685          
BLAST of FC877040 vs. ExPASy Swiss-Prot
Match: ABCD2_MOUSE (ATP-binding cassette sub-family D member 2 OS=Mus musculus GN=Abcd2 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.271e-33
Identity = 73/164 (44.51%), Postives = 109/164 (66.46%), Query Frame = 1
Query:   34 IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILESVRLSYLLEREEVGWDANLNWEDVLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTIN 525
            +FY+PQRPY  LG+LRDQ+IYP S ++       +  KG          D  L+ IL SV L ++++RE  GWDA ++W+DVLS GE+QR+GMAR+F+HKPK+ +LDECT+A S+DVE ++++ A   GI+ ++ + RP+L  +H+  L   DGEG W    ++
Sbjct:  544 MFYIPQRPYMSLGSLRDQVIYPDSADD-------MREKG--------YTDQDLERILHSVHLYHIVQREG-GWDAVMDWKDVLSGGEKQRMGMARMFYHKPKYALLDECTSAVSIDVEGKIFQAAIGAGISLLSITHRPSLWKYHT-HLLQFDGEGGWRFEQLD 690          
BLAST of FC877040 vs. ExPASy Swiss-Prot
Match: ABCD1_MOUSE (ATP-binding cassette sub-family D member 1 OS=Mus musculus GN=Abcd1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.271e-33
Identity = 70/164 (42.68%), Postives = 107/164 (65.24%), Query Frame = 1
Query:   34 IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILESVRLSYLLEREEVGWDANLNWEDVLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRTIN 525
            +FY+PQRPY  +G+LRDQ+IYP S E+   +                  +  L+ IL  V L ++L+RE  GW+A  +W+DVLS GE+QR+GMAR+F+H+PK+ +LDECT+A S+DVE ++++ AKD GI  ++ + RP+L  +H+  L   DGEG W+   ++
Sbjct:  539 MFYIPQRPYMSVGSLRDQVIYPDSAEDMRRKGCS---------------EQQLEAILGIVHLRHILQREG-GWEAVCDWKDVLSGGEKQRIGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGIALLSITHRPSLWKYHT-HLLQFDGEGGWKFEKLD 685          
BLAST of FC877040 vs. ExPASy Swiss-Prot
Match: PXA1_YEAST (Peroxisomal long-chain fatty acid import protein 2 OS=Saccharomyces cerevisiae GN=PXA1 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.032e-27
Identity = 72/168 (42.86%), Postives = 101/168 (60.12%), Query Frame = 1
Query:   34 IFYVPQRPYTCLG-TLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILESVRLSYLLEREEVGW---DANLNWEDVLSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDG-EGNWELRTI 522
            IF++PQ+PY   G TLRDQIIYP+S +E   R  +               D  L  IL  V+L YLL+R  VG    DA  +W+D+LS GE+QR+  AR+ FHKP + +LDE TNA SVD+E+ L+ L K     F++ SQRP LI +H + L + +  +G W+L+ +
Sbjct:  679 IFFIPQKPYFSRGGTLRDQIIYPMSSDEFFDRGFR---------------DKELVQILVEVKLDYLLKRG-VGLTYLDAIADWKDLLSGGEKQRVNFARIMFHKPLYVVLDEATNAISVDMEDYLFNLLKRYRFNFISISQRPTLIKYHEMLLEIGENRDGKWQLQAV 830          
The following BLAST results are available for this feature:
BLAST of FC877040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
AB1D_ARATH5.449e-7780.12ABC transporter D family member 1 OS=Arabidopsis t... [more]
ABCD3_RAT5.159e-3547.85ATP-binding cassette sub-family D member 3 OS=Ratt... [more]
ABCD2_HUMAN5.159e-3545.12ATP-binding cassette sub-family D member 2 OS=Homo... [more]
ABCD3_HUMAN8.801e-3548.47ATP-binding cassette sub-family D member 3 OS=Homo... [more]
ABCD3_MOUSE1.149e-3447.85ATP-binding cassette sub-family D member 3 OS=Mus ... [more]
ABCD2_RAT4.368e-3445.12ATP-binding cassette sub-family D member 2 OS=Ratt... [more]
ABCD1_HUMAN5.704e-3442.68ATP-binding cassette sub-family D member 1 OS=Homo... [more]
ABCD2_MOUSE1.271e-3344.51ATP-binding cassette sub-family D member 2 OS=Mus ... [more]
ABCD1_MOUSE1.271e-3342.68ATP-binding cassette sub-family D member 1 OS=Mus ... [more]
PXA1_YEAST3.032e-2742.86Peroxisomal long-chain fatty acid import protein 2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3CF12RM1 EHR Citrus clementina cDNA clone KN0AAN3CF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877040 ID=FC877040; Name=FC877040; organism=Citrus clementina; type=EST; length=626bp
GCACGAGGTGAAGAGGCTGGATCAGGTTGTGGTATCTTCTATGTTCCCCA
GCGACCATATACATGCTTAGGAACCTTGAGGGATCAAATTATTTATCCAC
TTTCTCGTGAAGAAGCAGAGCTGAGGGCTTTAAAGCTGCATGGAAAAGGT
GAAAAATTAGTTGACACCACAAACATTCTGGATTCATATTTGAAAACCAT
TTTAGAGAGTGTCCGATTAAGTTATTTGTTAGAGCGAGAGGAAGTTGGCT
GGGATGCCAATCTAAATTGGGAGGACGTTCTTTCTCTTGGAGAGCAGCAG
AGATTAGGAATGGCACGCTTATTCTTTCACAAGCCTAAATTTGGCATCCT
TGATGAATGCACCAATGCCACAAGTGTCGATGTTGAGGAACAACTTTACA
GGCTTGCAAAGGATATGGGCATCACATTTGTTACATCCTCTCAACGGCCT
GCCCTAATTCCATTTCATTCATTGGAATTACGGCTTATTGATGGTGAGGG
CAACTGGGAGCTTCGGACAATTAATTAATGAAACTGACGCTAATTATTCG
TTTGGAAAGATGGTGTATTGGTTTTTAAACAGGACCACCAGTGGGGTAAG
GCGGAGTTAATTTCATCATTCATGAA
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