FC877045

Overview
NameFC877045
Unique NameFC877045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877045 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.639e-22
Identity = 49/114 (42.98%), Postives = 75/114 (65.79%), Query Frame = 2
Query:  254 IMEVKDIVELPNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEV 595
            +  + + + LP  P+ SVAVA+ G +KS+Y V WALEKFIPEG   FKLL+VRP ++ +PTP  +A+         + ++R+DV +AYKQE  W  + +L P++ M  +R+V+V
Sbjct:    7 VRALSEHLSLPPPPSPSVAVAINGKKKSKYVVFWALEKFIPEGFTDFKLLYVRPPVSYIPTPMGIAVA--------VSELREDVVSAYKQELDWSANEMLRPYKKMFERRKVQV 112          
BLAST of FC877045 vs. ExPASy Swiss-Prot
Match: PUB35_ARATH (U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.090e-21
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 2
Query:  284 PNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEV*VKV 607
            P  P+ +V VA+ G+ KS+Y V WA+EKF  EG   FKLLH+ P ITSVPT        P+GN IPI +VRDDV  AY+QE  W+++ +L P+  +  +R+V V V V
Sbjct:   15 PPPPSRTVVVALSGSSKSKYVVTWAIEKFATEGNVGFKLLHIHPMITSVPT--------PMGNAIPISEVRDDVVTAYRQEILWQSEEMLKPYTKLFVRRKVAVEVLV 114          
BLAST of FC877045 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 38/105 (36.19%), Postives = 68/105 (64.76%), Query Frame = 2
Query:  284 PNSPALSVAVAVKGNRKSRYAVLWALEKFIPEGINLFKLLHVRPRITSVPTPTSLAIGHPVGNFIPIEQVRDDVAAAYKQEEKWKT-DRLLLPFRNMCAQRRVEV 595
            P+ P ++VA+A+ G+ KS+  + WAL KF  +    FKL+H+ P+IT++PT +        GN + I +  ++VAAAY+Q+   +T + LL PF+ MC ++++++
Sbjct:   28 PSEP-MTVALAISGSIKSKNVIKWALNKFGSDKNVTFKLIHIHPKITTLPTAS--------GNIVSISEELEEVAAAYRQKVMQETKETLLKPFKKMCERKKLKI 123          
The following BLAST results are available for this feature:
BLAST of FC877045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB52_ARATH1.639e-2242.98U-box domain-containing protein 52 OS=Arabidopsis ... [more]
PUB35_ARATH3.090e-2148.15U-box domain-containing protein 35 OS=Arabidopsis ... [more]
PUB53_ARATH6.901e-1336.19Putative U-box domain-containing protein 53 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN3CG07RM1 EHR Citrus clementina cDNA clone KN0AAN3CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877045 ID=FC877045; Name=FC877045; organism=Citrus clementina; type=EST; length=608bp
GCACGAGGCTGCACTCTGTTTCTTTGATATCCTCTCTGCTTCTTTCATAC
CCAACCAAATAGTCCTTGAACTTTCAGTTAGACTTAGACGAACACACAAA
AAAAAAAAAAAAAAAAAATTCAACTTGTAGAGTGGCTTTATAGATATTGA
GATATGGGTTTTTCTTCTTTTTTTTAATTCAGTCATTTGAGTTTTGATGA
GTTTTTGTCAACTGAAAAAACTGAGCATCCTGCAGGTTACATGAAGTAGC
AAAATAATGGAGGTAAAAGATATTGTTGAATTGCCAAATTCTCCTGCTTT
AAGTGTTGCAGTTGCTGTCAAGGGCAACAGAAAGAGTAGGTATGCTGTGT
TATGGGCATTGGAAAAGTTCATTCCTGAAGGAATCAATCTGTTTAAGTTA
TTACATGTCCGCCCAAGAATTACTTCAGTTCCTACACCAACATCTCTGGC
CATTGGACATCCAGTGGGAAATTTTATCCCTATTGAACAAGTACGTGATG
ATGTAGCAGCTGCTTATAAGCAGGAGGAGAAATGGAAGACAGACAGGCTT
CTGCTTCCTTTCAGAAATATGTGTGCTCAGAGACGGGTGGAGGTATAAGT
GAAAGTGA
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