FC877116

Overview
NameFC877116
Unique NameFC877116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10396 contig Ccv1_Contig10396:1..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877116 vs. ExPASy Swiss-Prot
Match: DHE3_BACTN (Glutamate dehydrogenase OS=Bacteroides thetaiotaomicron GN=gdhA PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 6.026e-31
Identity = 66/154 (42.86%), Postives = 99/154 (64.29%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAP 470
            ++F   +L     +LKG  C+VSGSG +A + +EK+I  G   V+ SD+ GY+ D DG D  K+ ++ ++K+  R  +R+Y++ Y   KY + AKPW E+CD+A P A+QNE++   A  LV +GC  + EG+NMP TPEAV V + A +L AP
Sbjct:  212 IYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTIEKVIELGGKVVTCSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYG-CKYVEGAKPWGEKCDIALPSATQNELNGDHARQLVANGCIAVSEGANMPSTPEAVRVFQDAKILYAP 364          
BLAST of FC877116 vs. ExPASy Swiss-Prot
Match: DHE4_PRERU (NAD(P)-specific glutamate dehydrogenase OS=Prevotella ruminicola GN=gdhA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.640e-29
Identity = 60/154 (38.96%), Postives = 102/154 (66.23%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAP 470
            V+F + +L    + L+G   +VSGSG +A + +EKL+  GA PV+ SD+ GY+ D DG D  K++F+ ++K+ +R  +++Y++ Y   KY + A+PW E+ D+A PCA+Q+EI++++A  L+ +G   + EG+NMP  P A+ V + A +L  P
Sbjct:  212 VYFLEDMLKTRGESLEGKTVLVSGSGNVAQYTIEKLLQLGAKPVTCSDSNGYIYDPDGIDAEKLAFIMELKNVKRGRIKEYAEKYG-VKYVENARPWGEKADIATPCATQDEINEAEAKTLIANGVFAVSEGANMPTEPAAIKVFQDAKILYCP 364          
BLAST of FC877116 vs. ExPASy Swiss-Prot
Match: DHE4_HAEIN (NADP-specific glutamate dehydrogenase OS=Haemophilus influenzae GN=gdhA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.143e-28
Identity = 62/155 (40.00%), Postives = 101/155 (65.16%), Query Frame = 3
Query:    9 LVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAP 470
            L++FAQ +LA+      G    VSGSG +A + +EK ++ GA  V+ SD+ GY+ D +GF   K++ L DIK+ +R  ++DY++ +   +Y++  +PW  + D+A PCA+QNE++ SDA  L+ +G +++ EG+NMP T EA + L  A+VL  P
Sbjct:  215 LIYFAQAMLAEKGDSFAGKVVSVSGSGNVAQYAIEKALSLGAKVVTCSDSSGYVYDPNGFTTEKLAALFDIKNTKRGRVKDYAEQFGL-QYFEGKRPWEVQVDIALPCATQNELELSDAQRLIKNGVKLVAEGANMPTTIEATEALLAADVLFGP 368          
BLAST of FC877116 vs. ExPASy Swiss-Prot
Match: DHE4_CHLSO (NADP-specific glutamate dehydrogenase (Fragment) OS=Chlorella sorokiniana PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.799e-28
Identity = 65/157 (41.40%), Postives = 99/157 (63.06%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYY--DEAKPWNERC--DVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAP 470
            V F + +L D  + LKG RC+VSG+G +A +  E L+  GAI +S+SD++GY+ + +GF   ++  ++D+K +  S R  S+  + +  Y  D  KPW   C  D+AFPCA+QNEID+ DA  L+  GC+ +VEG+NMP T EA+    KA ++  P
Sbjct:  290 VLFVENVLKDKGESLKGKRCLVSGAGNVAQYCAELLLEKGAIVLSLSDSQGYVYEPNGFTREQLQAVQDMKKKNNSAR-ISEYKSDTAVYVGDRRKPWELDCQVDIAFPCATQNEIDEHDAELLIKHGCQYVVEGANMPSTNEAIHKYNKAGIIYCP 445          
BLAST of FC877116 vs. ExPASy Swiss-Prot
Match: DHE4_PSYT1 (NADP-specific glutamate dehydrogenase OS=Psychrobacter sp. (strain TAD1) GN=gdhA PE=1 SV=4)

HSP 1 Score: 123.635 bits (309), Expect = 1.389e-27
Identity = 61/153 (39.87%), Postives = 99/153 (64.71%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAP 470
            V+F Q +LA  N+ ++G + +VSG+G +++H  EK    GAI ++VSD+KG + D  G +  KI +L+  K Q + L DY + +   ++  + KPW+ + D+A P A+QNEI++ DA  LV++G + +VEG+NMP T EA+D ++   V  AP
Sbjct:  212 VYFLQNMLAAQNESIEGKKVLVSGAGNVSLHAAEKATLIGAIVLTVSDSKGTIYDAKGLNQEKIDWLKVQKDQHKPLADYVEVFG-GEWMADQKPWSIKADIAIPSATQNEINEEDAKLLVDNGVKYIVEGANMPLTAEAIDYIRLHRVHYAP 363          
BLAST of FC877116 vs. ExPASy Swiss-Prot
Match: DHE4_SALTY (NADP-specific glutamate dehydrogenase OS=Salmonella typhimurium GN=gdhA PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.300e-25
Identity = 62/155 (40.00%), Postives = 97/155 (62.58%), Query Frame = 3
Query:    9 LVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK-SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAP 470
            LV+F + +L       +G+R  VSGSG +A + +EK +A+GA  V+ SD+ G +VDE GF   K++ L +IK S+   + DY++ +  + Y +  +PW+   D+A PCA+QNE+D   A  L+ +G + + EG+NMP T EA D+  +A VL AP
Sbjct:  215 LVYFTEAMLKRHGLGFEGMRVAVSGSGNVAQYAIEKAMAFGARVVTASDSSGTVVDESGFTPEKLARLCEIKASRDGRVADYAREFGLT-YLEGQQPWSVPVDIALPCATQNELDVDAARVLIANGVKAVAEGANMPTTIEATDLFLEAGVLFAP 368          
BLAST of FC877116 vs. ExPASy Swiss-Prot
Match: DHE4_SALTI (NADP-specific glutamate dehydrogenase OS=Salmonella typhi GN=gdhA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.300e-25
Identity = 62/155 (40.00%), Postives = 97/155 (62.58%), Query Frame = 3
Query:    9 LVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK-SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAP 470
            LV+F + +L       +G+R  VSGSG +A + +EK +A+GA  V+ SD+ G +VDE GF   K++ L +IK S+   + DY++ +  + Y +  +PW+   D+A PCA+QNE+D   A  L+ +G + + EG+NMP T EA D+  +A VL AP
Sbjct:  215 LVYFTEAMLKRHGLGFEGMRVAVSGSGNVAQYAIEKAMAFGARVVTASDSSGTVVDESGFTPEKLARLCEIKASRDGRVADYAREFGLT-YLEGQQPWSVPVDIALPCATQNELDVDAARVLIANGVKAVAEGANMPTTIEATDLFLEAGVLFAP 368          
BLAST of FC877116 vs. ExPASy Swiss-Prot
Match: DHE4_COREF (NADP-specific glutamate dehydrogenase OS=Corynebacterium efficiens GN=gdh PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.698e-25
Identity = 57/154 (37.01%), Postives = 95/154 (61.69%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAP 470
            V+F Q ++    + L+G + +VSGSG +A + ++K+   GA+ V  SD+ G++   +G D  K   LR+IK  +R+ +  Y+     ++Y+ +   W+   D+A PCA+QNE+D  +A  L ++GCR + EG+NMP TPEA+DV ++  VL  P
Sbjct:  217 VYFVQEMIKAEGETLEGKKVIVSGSGNVATYAIQKVQELGAVVVGFSDSSGWVSTPNGVDVAK---LREIKEVRRARVSSYADEVEGAEYHTDGSIWDLTADIALPCATQNELDGDNARTLADNGCRFVAEGANMPSTPEAIDVFRERGVLFGP 367          
BLAST of FC877116 vs. ExPASy Swiss-Prot
Match: DHE4_ECOLI (NADP-specific glutamate dehydrogenase OS=Escherichia coli (strain K12) GN=gdhA PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.941e-25
Identity = 60/155 (38.71%), Postives = 96/155 (61.94%), Query Frame = 3
Query:    9 LVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK-SQQRSLRDYSKTYARSKYYDEAKPWNERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAP 470
            LV+F + +L       +G+R  VSGSG +A + +EK + +GA  ++ SD+ G +VDE GF   K++ L +IK S+   + DY+K +    Y +  +PW+   D+A PCA+QNE+D   A  L+ +G + + EG+NMP T EA ++ ++A VL AP
Sbjct:  215 LVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLV-YLEGQQPWSLPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQQAGVLFAP 368          
BLAST of FC877116 vs. ExPASy Swiss-Prot
Match: DHE4_GIALA (NADP-specific glutamate dehydrogenase OS=Giardia lamblia PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.463e-24
Identity = 59/158 (37.34%), Postives = 90/158 (56.96%), Query Frame = 3
Query:   12 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPW---NERCDVAFPCASQNEIDQSDAINLVNSGCRILVEGSNMPCTPEAVDVLKKANVLIAPA 473
            V+F + +  D N  ++G   ++SGSG +A    EKLI  GA  ++ SD+ G +VD+DGF+  K++ L  +K+++R  + ++   Y    YY+  KPW     + D   PCA+QNE+   DA  LV  G + + EG+NMP T EAV V     V+  PA
Sbjct:  213 VYFLEEMCKDNNTVIRGKNVLLSGSGNVAQFACEKLIQLGAKVLTFSDSNGTIVDKDGFNEEKLAHLMYLKNEKRGRVSEFKDKYPSVAYYEGKKPWECFEGQMDCIMPCATQNEVSGDDATRLVGLGLKFVAEGANMPSTAEAVHVYHAKGVMYGPA 370          
The following BLAST results are available for this feature:
BLAST of FC877116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DHE3_BACTN6.026e-3142.86Glutamate dehydrogenase OS=Bacteroides thetaiotaom... [more]
DHE4_PRERU5.640e-2938.96NAD(P)-specific glutamate dehydrogenase OS=Prevote... [more]
DHE4_HAEIN2.143e-2840.00NADP-specific glutamate dehydrogenase OS=Haemophil... [more]
DHE4_CHLSO2.799e-2841.40NADP-specific glutamate dehydrogenase (Fragment) O... [more]
DHE4_PSYT11.389e-2739.87NADP-specific glutamate dehydrogenase OS=Psychroba... [more]
DHE4_SALTY1.300e-2540.00NADP-specific glutamate dehydrogenase OS=Salmonell... [more]
DHE4_SALTI1.300e-2540.00NADP-specific glutamate dehydrogenase OS=Salmonell... [more]
DHE4_COREF1.698e-2537.01NADP-specific glutamate dehydrogenase OS=Corynebac... [more]
DHE4_ECOLI4.941e-2538.71NADP-specific glutamate dehydrogenase OS=Escherich... [more]
DHE4_GIALA5.463e-2437.34NADP-specific glutamate dehydrogenase OS=Giardia l... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3DB11RM1 EHR Citrus clementina cDNA clone KN0AAN3DB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877116 ID=FC877116; Name=FC877116; organism=Citrus clementina; type=EST; length=860bp
GCACGAGGCTGGTTTTCTTTGCCCAGCTTATTCTCGCAGACATGAATAAG
GAGCTCAAAGGACTGAGATGTGTTGTAAGTGGTTCTGGAAAGATTGCAAT
GCATGTCCTGGAAAAGCTTATTGCTTATGGTGCTATTCCTGTTTCAGTGT
CAGATGCTAAAGGATATTTGGTGGATGAGGATGGATTTGATTACATGAAA
ATATCATTTTTGAGGGATATCAAATCACAGCAGAGAAGTTTGAGAGACTA
CTCAAAGACATACGCTCGGTCTAAGTACTATGATGAAGCAAAACCTTGGA
ATGAAAGGTGTGATGTTGCATTTCCTTGTGCCTCCCAGAATGAAATAGAT
CAGTCTGATGCCATTAATTTGGTTAATTCAGGTTGTCGTATACTTGTAGA
AGGTTCAAATATGCCATGTACACCTGAAGCAGTTGATGTTCTGAAAAAAG
CTAATGTTCTCATAGCCCCTGCAATGGCTGCTGGTGCTGGGAGGGGTTGT
TGCAGGAGAACTTGAACTAAACCAGGAGTGCAATATGGTGCACTGGTCGC
CCGAGGACTTTGAATCTAAATTACAAGTATGACACCCAATACTTCAAATC
TTGCTCTCAAATAGCTTAATCTTGAATGCAAATAGCTTCAAGCTTTTCTT
TCCTTTTCCTTTTCATTCGAGCTGAGAACGACATAGCTGAAAGCATTAGT
TGTAACTATTAGCTGTCTTAATATTCGGGGTCTTTTTGACCAAGATGACA
AAGTTCATTAAGTTGTTTGCTTGTGGAAAACTTATATTGTGGGTGACTCT
AGGAACAGTTAATAATCATCCATTTGGTCATGCTGTGGAAATGAAATCAA
CTGAATATTT
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