FC877145

Overview
NameFC877145
Unique NameFC877145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877145_ssr123 microsatellite FC877145_ssr123:123..134. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10421 contig Ccv1_Contig10421:1..479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877145 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.170e-22
Identity = 48/58 (82.76%), Postives = 55/58 (94.83%), Query Frame = 1
Query:  139 YSKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 312
            +SKRR+M+  + ++TP+VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR
Sbjct:  345 FSKRRRMEGAM-EITPLVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 401          
BLAST of FC877145 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.339e-19
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 1
Query:  142 SKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 312
            SKRRK++A  A+++   + IREPRVVVQT S+VDILDDGYRWRKYGQKVV+GNPNPR
Sbjct:  451 SKRRKLEAFAAEMSGSTRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPR 507          
BLAST of FC877145 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.683e-17
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 1
Query:  142 SKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 312
            SKRRK++A   + +   +  REPRVVVQT S++DILDDGYRWRKYGQKVV+GNPNPR
Sbjct:  336 SKRRKLEAYATETSGSTRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 392          
BLAST of FC877145 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.246e-14
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 1
Query:  193 KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 312
            K +REPR+VVQT S++DILDDGYRWRKYGQKVV+GNPNPR
Sbjct:  343 KTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 382          
BLAST of FC877145 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.626e-14
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  145 KRRKMDALVADVTPVV--KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 312
            KRR  +  +++  P    + + EPR++VQT SEVD+LDDGYRWRKYGQKVV+GNP PR
Sbjct:  372 KRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR 429          
BLAST of FC877145 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.185e-14
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 1
Query:  199 IREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 312
            ++EPRVVVQT S++DILDDGYRWRKYGQKVV+GNPNPR
Sbjct:  217 VKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 254          
BLAST of FC877145 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.378e-13
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 1
Query:  145 KRRKMDALVAD-VTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 312
            KRR  +  V++ V    + + EPR++VQT SEVD+LDDGYRWRKYGQKVV+GNP PR
Sbjct:  379 KRRNTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPR 435          
BLAST of FC877145 vs. ExPASy Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.378e-13
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1
Query:  145 KRRKMDALVADVTPVV-KPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRYVSN 324
            KRR  +  V+++     + +REPRV+ QT SEVD LDDGYRWRKYGQKVV+GNP PR+ S+
Sbjct:  605 KRRITEVQVSELADASDRTVREPRVIFQTTSEVDNLDDGYRWRKYGQKVVKGNPYPRFSSS 665          
BLAST of FC877145 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.350e-13
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 1
Query:  142 SKRRKMDALVADVTPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 312
            SK R++D     V+   + + EP+++VQT SEVD+LDDGYRWRKYGQKVV+GNP+PR
Sbjct:  274 SKIRRIDG----VSTTHRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVKGNPHPR 326          
BLAST of FC877145 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.598e-12
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 1
Query:  187 VVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPR 312
            V K ++EPRVVVQT+S++D+L DG+RWRKYGQKVV+GN NPR
Sbjct:  307 VSKGVKEPRVVVQTISDIDVLIDGFRWRKYGQKVVKGNTNPR 348          
The following BLAST results are available for this feature:
BLAST of FC877145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
WRK20_ARATH6.170e-2282.76Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRKY2_ARATH8.339e-1973.68Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK34_ARATH2.683e-1768.42Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK33_ARATH1.246e-1482.50Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRKY4_ARATH3.626e-1458.62Probable WRKY transcription factor 4 OS=Arabidopsi... [more]
WRK26_ARATH6.185e-1484.21Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRKY3_ARATH1.378e-1361.40Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRK19_ARATH1.378e-1359.02Probable WRKY transcription factor 19 OS=Arabidops... [more]
WRK58_ARATH2.350e-1359.65Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRK25_ARATH2.598e-1271.43Probable WRKY transcription factor 25 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2AF07RM1 EHR Citrus clementina cDNA clone KN0AAN2AF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877145 ID=FC877145; Name=FC877145; organism=Citrus clementina; type=EST; length=479bp
GCACGAGGCCTAACTTGTCGAGATGGCAGCATGTATGGTCAGATGTCTCA
TGCCATGGAGACAAATGGCACCCTGGACCTGTCTCCCGTAGCAAATGACG
ATAGTGTTGAAGGTGCGGATGTTGATGATGATGATCAATATTCAAAGCGG
AGAAAGATGGACGCCCTTGTAGCTGATGTCACTCCAGTGGTCAAGCCTAT
TCGGGAACCACGTGTTGTTGTTCAAACTCTTAGTGAGGTTGATATACTTG
ATGATGGATACCGTTGGCGCAAGTATGGACAGAAAGTGGTGAGAGGTAAT
CCTAATCCAAGGTATGTGTCAAATTTGATGATTTAATTTTTGTTCTTTTT
GTCTTCATCATGAATGTTTTGATAAGTAACTTCTATCCATATAAGAAGAG
TCCATGAAATATGTCAGGCTTTCTTTTCTCACTGAATTGATAACTAATAT
TTGTGAAAGTGACCAGATCTGGCTTTGAT
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