FC877203

Overview
NameFC877203
Unique NameFC877203
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877203 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.181e-24
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 1
Query:  163 LQLLEMLCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVG 348
            + +LEMLC+ YGGRVDLAKAY+KALT+SV KHF GNGVIASMEHCNDFM LGTEAI+LGRVG
Sbjct:  415 IHILEMLCQKYGGRVDLAKAYFKALTSSVNKHFNGNGVIASMEHCNDFMFLGTEAISLGRVG 476          
BLAST of FC877203 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.216e-23
Identity = 52/62 (83.87%), Postives = 57/62 (91.94%), Query Frame = 1
Query:  163 LQLLEMLCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVG 348
            + LLE+L E YGGRV+LAKAYYKALT+SV KHFKGNGVIASMEHCNDF LLGTEAI+LGRVG
Sbjct:  428 IHLLELLSEEYGGRVELAKAYYKALTSSVNKHFKGNGVIASMEHCNDFFLLGTEAISLGRVG 489          
BLAST of FC877203 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.075e-23
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 1
Query:  163 LQLLEMLCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVG 348
            + LLEM+CE YGGRV+LAKAY+  LT SVR+HF GNGVIASMEHCNDFMLLGTEA+ALGRVG
Sbjct:  413 IHLLEMVCEEYGGRVELAKAYFAGLTESVRRHFNGNGVIASMEHCNDFMLLGTEAVALGRVG 474          
BLAST of FC877203 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.303e-17
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 1
Query:  172 LEMLCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVG 348
            LE +C+ YGGRVDLAK YY+ LT S+ K+F GNG+IASM+HCNDF  LGT+ I++GRVG
Sbjct:  486 LEYVCDEYGGRVDLAKVYYEGLTKSIVKNFNGNGMIASMQHCNDFFFLGTKQISMGRVG 544          
BLAST of FC877203 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 1
Query:  166 QLLEMLCENYGGRVDLAKAYYKALTASVRKHFKGNGVIASMEHCNDFMLLGTEAIALGRVG 348
            Q LE L E +GGRV+LAKAYY  LT S+ K+F G  VIASM+ CN+F  L T+ I++GRVG
Sbjct:  500 QTLESLAEEHGGRVELAKAYYDGLTESMIKNFNGTDVIASMQQCNEFFFLATKQISIGRVG 560          
The following BLAST results are available for this feature:
BLAST of FC877203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RFS5_ARATH4.181e-2482.26Probable galactinol--sucrose galactosyltransferase... [more]
RFS_PEA1.216e-2383.87Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
RFS_ORYSJ2.075e-2380.65Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
STSYN_PEA1.303e-1766.10Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
RFS4_ARATH1.947e-1359.02Probable galactinol--sucrose galactosyltransferase... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3DG06RM1 EHR Citrus clementina cDNA clone KN0AAN3DG06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877203 ID=FC877203; Name=FC877203; organism=Citrus clementina; type=EST; length=729bp
GCACGAGGTAAAACTGCTTTTACGTGTCGTTTTTTCGGTTAGCGTTGGTT
ATTGTTATGTTATTAATTTTTGACTCGTTTGGTCGGCACGTTTCTGCTAA
TTTTTTTTTCTTCTTTTTATACGAAATTATTTTGAAAATTCGTCATTAGT
CATTTTTATTTTTTACAGTTGCTGGAGATGTTGTGTGAGAATTATGGAGG
AAGGGTGGACTTGGCAAAAGCATATTACAAGGCATTAACAGCTTCTGTAA
GGAAGCACTTCAAGGGCAATGGTGTAATTGCAAGCATGGAGCACTGCAAC
GATTTTATGTTACTTGGGACAGAGGCCATAGCTCTTGGTCGCGTTGGTAT
GACATCGAATTAATACATTCAAATTTTATAAAAAAGGATTAGTTTTAATT
AACAAGCTTTTAATGCAATCAATTCTTTCCTTGTGTTTATAACTTTTGTT
AGGTAGTGTAGGCTAGTCCTATCTTTATTTCATTCCCTGTGTTTTGGGCA
ATAAAGATTTTAATTAGATCAAAGCGTGTTGATTTGACTATAAATGTTTT
AATTAATCAGATACCCTTAACATCACCACGTGTACAAGATCACATATTTA
AGTTAATTAATATCATTTCGGTGGACCAACATATATTTTTATTAACTTTT
CCTAGCGAGAAACATGCCATGCTTTTCGGCAGCAAATTTTGAAGTACGAG
CCCAATATGTAGGAAGCTTTGGTATCTCA
back to top