FC877210
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 4.915e-40 Identity = 80/164 (48.78%), Postives = 108/164 (65.85%), Query Frame = 1 Query: 157 KEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCW 645 K ++YL QLQ HPLRTKAITAGVL+G SD ++QK+SG+ F G+ P GHF + +LD FKG+ D ++VAKKV+LEQL SP + LFM Y+G+V+E PW V ++++K YP VQ T+W +P V W+N++YVP FR + SLVA W Sbjct: 8 KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFW 171
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.222e-16 Identity = 51/164 (31.10%), Postives = 85/164 (51.83%), Query Frame = 1 Query: 175 YLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCWWLSSSI 663 Y+ +L+ P++TKA+T+ L+ S +AQK + P H+ + LD +FK +D K++++QL+F+P+IN F + +++GKP + K +P ++ SWKVWP +NF++VP R LF +LV CW + SI Sbjct: 17 YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGL-ISSPLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA-ILDGKPKSILFKLYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSI 177
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.146e-15 Identity = 51/168 (30.36%), Postives = 85/168 (50.60%), Query Frame = 1 Query: 154 VKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQ--KISGVXXXXXXXXXXXXXFDFGYGV--PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCW 645 +K A YL QL +P+ TKA+T+G L SD++ Q ++S FG+ V P H+ K+LD F + + K+ ++Q++ SP NFLF + G ++EGK +++K++KD+ + VWP + +VNF Y+ R F ++ W Sbjct: 8 LKLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGKSKDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGW 174
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PXMP2_MOUSE (Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14 Identity = 50/175 (28.57%), Postives = 91/175 (52.00%), Query Frame = 1 Query: 142 MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDF-GYGV----PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCWW 648 + ++ K A +YL+ L+++P+ TKA+++G+L+ + +AQ I + YG+ P H+L F++ + K++LL++L F+P LF L+ EGK + K+R + PA+Q +W++W + ++N YVP QFR LF ++ A W+ Sbjct: 14 LGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKRLLLDRLFFAPTFLLLFFFVMNLL-EGKNVSVFVAKMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWY 186
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PXMP2_RAT (Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.760e-13 Identity = 50/175 (28.57%), Postives = 90/175 (51.43%), Query Frame = 1 Query: 142 MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDF-GYGV----PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCWW 648 + ++ K A +YL+ L+ +P+ TKA+++G+L+ + +AQ I + YG+ P H+L F++ + K++LL++L F+P LF L+ EGK + K+R + PA+Q +W++W + ++N YVP QFR LF ++ A W+ Sbjct: 14 LRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAPTFLLLFFFVMNLL-EGKNISVFVAKMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWY 186
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PXMP2_BOVIN (Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3) HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13 Identity = 48/174 (27.59%), Postives = 84/174 (48.28%), Query Frame = 1 Query: 157 KEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGV-------PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVV---EGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCWW 648 + A +YL L+++P+ TKA T+G+L+ + +AQ I Y + P GHF ++ + K++LL++L+F+P F++ F LV+ EG+ + K++ + +W+VW V ++N Y+P QFR LF +LVA W+ Sbjct: 19 RRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGPLRYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAP----AFLSLFFLVMNFLEGQDTAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWY 188
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PXMP2_HUMAN (Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12 Identity = 45/170 (26.47%), Postives = 81/170 (47.65%), Query Frame = 1 Query: 157 KEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKIS------GVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCWW 648 + A +YL+ L+++P+ TKA T+G+L+ + +AQ I + F + P HF F++ + +++LL++L+F+P LF + EGK + K+R + +W+VW + ++N YVP +FR LF +L A W+ Sbjct: 19 RRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPLRYAVYGFFFTGPLSHFFYFFMEHWIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMNFL-EGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWY 187
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PX24B_DICDI (PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12 Identity = 45/171 (26.32%), Postives = 77/171 (45.03%), Query Frame = 1 Query: 154 VKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKIS-------GVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCW 645 +++ W YL L HPL TK+++ G L G D +AQ++ Y P H+ + LD + KG + KK+L++QL+F+P FMT + ++ ++ + AV+ +W +WP +NF VP R L+ S+++ W Sbjct: 1 MRKLWGLYLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMSTVGIFYSGPMLHYWYRSLDIMVKGEGRSVIIKKMLIDQLLFAPVAIGGFMTVTNFINNKGELKNLENFTKELFYAVKI-NWLIWPAAQIINFSLVPPNLRVLYSSIISIFW 170
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: MPV17_XENLA (Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12 Identity = 45/163 (27.61%), Postives = 69/163 (42.33%), Query Frame = 1 Query: 166 WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCW 645 WR Y L HP + + +TAG L G D I+Q++ G+ F + P K LD I G KK+LL+Q+ F+P F++ + G + K+++DY T++ +WP V NF ++P R VA W Sbjct: 5 WRAYQRLLGAHPWKVQIVTAGSLVGVGDVISQQLLERKGLKGHSIERTVKMMGIGFCFVGPVVGGWYKILDRIIPGSGKPVALKKMLLDQVAFAPCFLGCFLS-IASALNGLSGEQIWGKLKRDYKDALITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIW 166
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: MPV17_RAT (Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11 Identity = 47/163 (28.83%), Postives = 70/163 (42.94%), Query Frame = 1 Query: 166 WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCW 645 WR Y L HP + + +TAG L G D I+Q++ G+ G+ P + LD + G + KK+LL+Q F+P F+ G V+ G K+++DYP T++ +WP V NF VP +R VA W Sbjct: 4 WRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQQHQTGRTLTMASLGCGFVGPVVGGWYRVLDHLIPGTTKVNALKKMLLDQGGFAPCFLGCFLPLVG-VLNGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVVW 165 The following BLAST results are available for this feature:
BLAST of FC877210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877210 ID=FC877210; Name=FC877210; organism=Citrus clementina; type=EST; length=806bpback to top |