FC877210

Overview
NameFC877210
Unique NameFC877210
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length806
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig532 contig Ccv1_Contig532:10..815. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.915e-40
Identity = 80/164 (48.78%), Postives = 108/164 (65.85%), Query Frame = 1
Query:  157 KEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGR-DNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCW 645
            K   ++YL QLQ HPLRTKAITAGVL+G SD ++QK+SG+             F  G+  P GHF + +LD  FKG+ D ++VAKKV+LEQL  SP  + LFM Y+G+V+E  PW  V ++++K YP VQ T+W  +P V W+N++YVP  FR +  SLVA  W
Sbjct:    8 KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFW 171          
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.222e-16
Identity = 51/164 (31.10%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  175 YLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCWWLSSSI 663
            Y+ +L+  P++TKA+T+  L+  S  +AQK                 +      P  H+ +  LD +FK  +D      K++++QL+F+P+IN  F +    +++GKP   + K     +P ++  SWKVWP    +NF++VP   R LF +LV  CW +  SI
Sbjct:   17 YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGL-ISSPLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA-ILDGKPKSILFKLYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSI 177          
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.146e-15
Identity = 51/168 (30.36%), Postives = 85/168 (50.60%), Query Frame = 1
Query:  154 VKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQ--KISGVXXXXXXXXXXXXXFDFGYGV--PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCW 645
            +K A   YL QL  +P+ TKA+T+G L   SD++ Q  ++S                 FG+ V  P  H+  K+LD  F  +  +    K+ ++Q++ SP  NFLF +  G ++EGK    +++K++KD+     +   VWP + +VNF Y+    R  F ++    W
Sbjct:    8 LKLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMG-ILEGKSKDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGW 174          
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PXMP2_MOUSE (Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.716e-14
Identity = 50/175 (28.57%), Postives = 91/175 (52.00%), Query Frame = 1
Query:  142 MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDF-GYGV----PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCWW 648
            + ++ K A  +YL+ L+++P+ TKA+++G+L+   + +AQ I                  +  YG+    P  H+L  F++         +  K++LL++L F+P    LF     L+ EGK     + K+R  + PA+Q  +W++W  + ++N  YVP QFR LF ++ A  W+
Sbjct:   14 LGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKRLLLDRLFFAPTFLLLFFFVMNLL-EGKNVSVFVAKMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWY 186          
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PXMP2_RAT (Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.760e-13
Identity = 50/175 (28.57%), Postives = 90/175 (51.43%), Query Frame = 1
Query:  142 MSNIVKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDF-GYGV----PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDY-PAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCWW 648
            + ++ K A  +YL+ L+ +P+ TKA+++G+L+   + +AQ I                  +  YG+    P  H+L  F++         +  K++LL++L F+P    LF     L+ EGK     + K+R  + PA+Q  +W++W  + ++N  YVP QFR LF ++ A  W+
Sbjct:   14 LRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAPTFLLLFFFVMNLL-EGKNISVFVAKMRSGFWPALQM-NWRMWTPLQFININYVPLQFRVLFANMAALFWY 186          
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PXMP2_BOVIN (Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13
Identity = 48/174 (27.59%), Postives = 84/174 (48.28%), Query Frame = 1
Query:  157 KEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGV-------PFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVV---EGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCWW 648
            + A  +YL  L+++P+ TKA T+G+L+   + +AQ I                    Y +       P GHF    ++         +  K++LL++L+F+P     F++ F LV+   EG+   +   K++  +      +W+VW  V ++N  Y+P QFR LF +LVA  W+
Sbjct:   19 RRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGPLRYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAP----AFLSLFFLVMNFLEGQDTAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWY 188          
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PXMP2_HUMAN (Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12
Identity = 45/170 (26.47%), Postives = 81/170 (47.65%), Query Frame = 1
Query:  157 KEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKIS------GVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCWW 648
            + A  +YL+ L+++P+ TKA T+G+L+   + +AQ I                      + F +  P  HF   F++         +  +++LL++L+F+P    LF      + EGK   +   K+R  +      +W+VW  + ++N  YVP +FR LF +L A  W+
Sbjct:   19 RRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPLRYAVYGFFFTGPLSHFFYFFMEHWIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMNFL-EGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWY 187          
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: PX24B_DICDI (PXMP2/4 family protein 2 OS=Dictyostelium discoideum GN=DDB_G0278529 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 45/171 (26.32%), Postives = 77/171 (45.03%), Query Frame = 1
Query:  154 VKEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKIS-------GVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCW 645
            +++ W  YL  L  HPL TK+++ G L G  D +AQ++                           Y  P  H+  + LD + KG     + KK+L++QL+F+P     FMT    +       ++    ++ + AV+  +W +WP    +NF  VP   R L+ S+++  W
Sbjct:    1 MRKLWGLYLGLLDNHPLVTKSLSTGFLMGTGDILAQRLEHKFKDEKSQFKLDYKRVATMSTVGIFYSGPMLHYWYRSLDIMVKGEGRSVIIKKMLIDQLLFAPVAIGGFMTVTNFINNKGELKNLENFTKELFYAVKI-NWLIWPAAQIINFSLVPPNLRVLYSSIISIFW 170          
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: MPV17_XENLA (Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12
Identity = 45/163 (27.61%), Postives = 69/163 (42.33%), Query Frame = 1
Query:  166 WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCW 645
            WR Y   L  HP + + +TAG L G  D I+Q++    G+               F +  P      K LD I  G       KK+LL+Q+ F+P     F++     + G     +  K+++DY     T++ +WP V   NF ++P   R      VA  W
Sbjct:    5 WRAYQRLLGAHPWKVQIVTAGSLVGVGDVISQQLLERKGLKGHSIERTVKMMGIGFCFVGPVVGGWYKILDRIIPGSGKPVALKKMLLDQVAFAPCFLGCFLS-IASALNGLSGEQIWGKLKRDYKDALITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIW 166          
BLAST of FC877210 vs. ExPASy Swiss-Prot
Match: MPV17_RAT (Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 47/163 (28.83%), Postives = 70/163 (42.94%), Query Frame = 1
Query:  166 WRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKI---SGVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKGRDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGKPWGSVMKKVRKDYPAVQFTSWKVWPTVTWVNFQYVPQQFRELFFSLVASCW 645
            WR Y   L  HP + + +TAG L G  D I+Q++    G+                G+  P      + LD +  G    +  KK+LL+Q  F+P     F+   G V+ G        K+++DYP    T++ +WP V   NF  VP  +R      VA  W
Sbjct:    4 WRAYQRALAAHPWKVQVLTAGSLMGLGDIISQQLVERRGLQQHQTGRTLTMASLGCGFVGPVVGGWYRVLDHLIPGTTKVNALKKMLLDQGGFAPCFLGCFLPLVG-VLNGMSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVVW 165          
The following BLAST results are available for this feature:
BLAST of FC877210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PMP22_ARATH4.915e-4048.78Peroxisomal membrane protein PMP22 OS=Arabidopsis ... [more]
PX24C_DICDI2.222e-1631.10PXMP2/4 family protein 3 OS=Dictyostelium discoide... [more]
PX24D_DICDI7.146e-1530.36PXMP2/4 family protein 4 OS=Dictyostelium discoide... [more]
PXMP2_MOUSE2.716e-1428.57Peroxisomal membrane protein 2 OS=Mus musculus GN=... [more]
PXMP2_RAT1.760e-1328.57Peroxisomal membrane protein 2 OS=Rattus norvegicu... [more]
PXMP2_BOVIN5.122e-1327.59Peroxisomal membrane protein 2 OS=Bos taurus GN=PX... [more]
PXMP2_HUMAN1.490e-1226.47Peroxisomal membrane protein 2 OS=Homo sapiens GN=... [more]
PX24B_DICDI2.542e-1226.32PXMP2/4 family protein 2 OS=Dictyostelium discoide... [more]
MPV17_XENLA9.659e-1227.61Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2[more]
MPV17_RAT1.648e-1128.83Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3DH02RM1 EHR Citrus clementina cDNA clone KN0AAN3DH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877210 ID=FC877210; Name=FC877210; organism=Citrus clementina; type=EST; length=806bp
TGCAGATCAAACCAAGTGAAACCAGCTTGTCATTTCCTTAACTCAATTTC
TTTATCATCGCATTGTGGTGACTCCTCTCTTAACATTGAGCTTTTGGAGA
GAAGTTATTGTTGATCATCACAGGCTTCACAACCGCCAGCCATGTCTAAT
ATAGTCAAAGAAGCTTGGAGAAAATATCTTATACAACTCCAAGTTCACCC
TTTGAGAACCAAGGCAATCACAGCTGGGGTACTAGCTGGGTGTAGTGATG
CAATTGCCCAGAAGATTTCTGGGGTCAAAAAGCTTCAACTGAAAAGATTG
CTGCTTCTTATGCTTTTTGATTTCGGATATGGAGTACCATTTGGGCATTT
TCTTAACAAGTTCTTGGATGCCATTTTCAAGGGAAGGGACAACAAATCTG
TTGCAAAGAAGGTATTATTGGAGCAACTAATATTTTCGCCTTGGATCAAC
TTTCTGTTCATGACTTACTTTGGCTTGGTGGTTGAAGGAAAACCATGGGG
TTCAGTCATGAAGAAAGTTCGAAAGGACTATCCAGCTGTTCAGTTTACTT
CATGGAAGGTTTGGCCAACTGTTACTTGGGTGAATTTCCAGTACGTCCCT
CAGCAATTCCGAGAACTCTTTTTCAGCTTGGTTGCCTCCTGCTGGTGGCT
ATCTTCATCAATTTGAAAGCTGAATCCGCTGCAATAAAGAAGGACTAGAG
GGAGCCTCCAAGGGGTCTGGCCGGTAGAGTGATTTTCAAGTAGCCGAGTC
TAAATCCTGAGGAAAGGAGGGATTTAAAAAACTGGTTTCAGTTTTGGTCA
ACCTTT
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