FC877228

Overview
NameFC877228
Unique NameFC877228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10452 contig Ccv1_Contig10452:1..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877228 vs. ExPASy Swiss-Prot
Match: G6PI_SPIOL (Glucose-6-phosphate isomerase, cytosolic OS=Spinacia oleracea GN=PGIC PE=2 SV=2)

HSP 1 Score: 223.402 bits (568), Expect = 5.828e-58
Identity = 108/138 (78.26%), Postives = 121/138 (87.68%), Query Frame = 1
Query:  142 MASSTLICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKKFSETIHSGSW 555
            MA STLICDT+ W++LK HV EIKKTHLRDLMSD DRC+SMMVEFDG+LLDYSRQNAT  TM KL+QLAEA+ L +KIN+M+NGE INSTENRSVLHVALRA RDA IN DGKNVVP+VW+VLDKI+ FSE I SGSW
Sbjct:    1 MAPSTLICDTDSWQNLKTHVAEIKKTHLRDLMSDADRCKSMMVEFDGLLLDYSRQNATHDTMSKLFQLAEASHLKDKINQMFNGEHINSTENRSVLHVALRASRDAVINGDGKNVVPDVWQVLDKIRDFSEKIRSGSW 138          
BLAST of FC877228 vs. ExPASy Swiss-Prot
Match: G6PI_ARAGE (Glucose-6-phosphate isomerase, cytosolic OS=Arabis gemmifera GN=PGIC PE=3 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 1.298e-57
Identity = 109/139 (78.42%), Postives = 122/139 (87.77%), Query Frame = 1
Query:  142 MASST-LICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKKFSETIHSGSW 555
            MASST L CDTE WKDLK HV++IKKTHLRDLMSD +RCQSMM+EFDG+LLDYSRQ A ++TMDKL  LA+AAQL  KI+RM+NGE INSTENRSVLHVALRAP+DA I +DGKNVVPEVW VLDKIK+FSE I SGSW
Sbjct:    1 MASSTALFCDTEAWKDLKGHVEDIKKTHLRDLMSDANRCQSMMMEFDGLLLDYSRQRAPVETMDKLLNLAKAAQLTEKISRMFNGEHINSTENRSVLHVALRAPKDAVIKADGKNVVPEVWNVLDKIKEFSEKIRSGSW 139          
BLAST of FC877228 vs. ExPASy Swiss-Prot
Match: G6PI_ARATH (Glucose-6-phosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=PGIC PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.215e-57
Identity = 108/139 (77.70%), Postives = 123/139 (88.49%), Query Frame = 1
Query:  142 MASST-LICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKKFSETIHSGSW 555
            MASST LICDTE WKDLK HV++IKKTHLRDLMSD +RCQSMM+EFDG+LLDYSRQ AT++TMDKL  LA+A+QL  KI+RM+NGE INSTENRSVLHVALRAP+DA I +DG NVVPEVW VLDKIK+FS+ I SGSW
Sbjct:    1 MASSTALICDTEAWKDLKGHVEDIKKTHLRDLMSDANRCQSMMMEFDGLLLDYSRQRATVETMDKLLNLAKASQLTEKISRMFNGEHINSTENRSVLHVALRAPKDAVIKADGMNVVPEVWNVLDKIKEFSDKIRSGSW 139          
BLAST of FC877228 vs. ExPASy Swiss-Prot
Match: G6PI_ARALP (Glucose-6-phosphate isomerase, cytosolic OS=Arabidopsis lyrata subsp. petraea GN=PGIC PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.215e-55
Identity = 107/139 (76.98%), Postives = 121/139 (87.05%), Query Frame = 1
Query:  142 MASST-LICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKKFSETIHSGSW 555
            MASST LI DTE WKDLK HV++IKKTHLRDLM+D +RCQSMM+EFDG+LLDYSRQ A ++TMDKL  LA+AAQL  KI+RM+NGE INSTENRSVLHVALRAP+DA I +DGKNVV EVW VLDKIK+FSE I SGSW
Sbjct:    1 MASSTALISDTEAWKDLKGHVEDIKKTHLRDLMTDANRCQSMMMEFDGLLLDYSRQRAPVETMDKLLNLAKAAQLTEKISRMFNGEHINSTENRSVLHVALRAPKDAVIKADGKNVVQEVWNVLDKIKEFSEKIRSGSW 139          
BLAST of FC877228 vs. ExPASy Swiss-Prot
Match: G6PI_OENME (Glucose-6-phosphate isomerase, cytosolic OS=Oenothera mexicana GN=PGIC PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.534e-53
Identity = 100/138 (72.46%), Postives = 118/138 (85.51%), Query Frame = 1
Query:  142 MASSTLICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKKFSETIHSGSW 555
            MAS  LI +TE WKDLK HV++IK+THLR+LM DT+RCQSMMVEFD I LDYSRQ A+  T++KLY+LA+AA L  KI+RMYNG+ INSTENRSVLHVALRAPR++AI SDGKNVVP+VW VLDKIK FSE + +GSW
Sbjct:    1 MASPALISETEAWKDLKAHVEDIKRTHLRELMGDTERCQSMMVEFDNIFLDYSRQQASPDTINKLYKLADAAHLKQKIDRMYNGDHINSTENRSVLHVALRAPRNSAICSDGKNVVPDVWNVLDKIKDFSERVRNGSW 138          
BLAST of FC877228 vs. ExPASy Swiss-Prot
Match: G6PI2_CLAXA (Glucose-6-phosphate isomerase, cytosolic 2 OS=Clarkia xantiana GN=PGIC2 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.258e-52
Identity = 99/138 (71.74%), Postives = 118/138 (85.51%), Query Frame = 1
Query:  142 MASSTLICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKKFSETIHSGSW 555
            MA+ +LI +TE WKDLK H++ IK+THLR+LM DT+RCQSMMVEFD I LDYSRQ A+  T++KLY+LAEAA L  KI+RMYNG+ INSTENRSVLHVALRAPR++AI SDGKNVVP+VW VLDKIK FSE + +GSW
Sbjct:    1 MATPSLISETEAWKDLKAHLEGIKRTHLRELMGDTERCQSMMVEFDNIFLDYSRQQASPDTINKLYKLAEAAHLKQKIDRMYNGDHINSTENRSVLHVALRAPRNSAICSDGKNVVPDVWNVLDKIKDFSERVRNGSW 138          
BLAST of FC877228 vs. ExPASy Swiss-Prot
Match: G6PI2_CLALE (Glucose-6-phosphate isomerase, cytosolic 2A OS=Clarkia lewisii GN=PGIC2-A PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.642e-52
Identity = 99/138 (71.74%), Postives = 117/138 (84.78%), Query Frame = 1
Query:  142 MASSTLICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKKFSETIHSGSW 555
            MA+  LI +TE WKDLK H++ IK+THLR+LM DT+RCQSMMVEFD I LDYSRQ A+  T++KLY+LAEAA L  KI+RMYNG+ INSTENRSVLHVALRAPR++AI SDGKNVVP+VW VLDKIK FSE + +GSW
Sbjct:    1 MATPALISETEAWKDLKAHLEGIKRTHLRELMGDTERCQSMMVEFDNIFLDYSRQQASPDTINKLYKLAEAAHLKQKIDRMYNGDHINSTENRSVLHVALRAPRNSAICSDGKNVVPDVWNVLDKIKDFSERVRNGSW 138          
BLAST of FC877228 vs. ExPASy Swiss-Prot
Match: G6PI1_CLAMI (Glucose-6-phosphate isomerase, cytosolic 1 OS=Clarkia mildrediae GN=PGIC1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.802e-52
Identity = 99/138 (71.74%), Postives = 115/138 (83.33%), Query Frame = 1
Query:  142 MASSTLICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKKFSETIHSGSW 555
            MAS  LI +TE WKDLK H++ IK+THLR+LM DT+RCQSMMVEFD I LDYSRQ A   T+ KLY+LA+AA L  KI+RMYNG+ INSTENRSVLHVALRAPRD+AI SDGKNVVP+VW VLDKIK FS+ + +GSW
Sbjct:    1 MASPALISETEAWKDLKAHLEGIKRTHLRELMGDTERCQSMMVEFDNIFLDYSRQQAIPDTIKKLYKLADAAHLKQKIDRMYNGDHINSTENRSVLHVALRAPRDSAICSDGKNVVPDVWNVLDKIKDFSDRVRNGSW 138          
BLAST of FC877228 vs. ExPASy Swiss-Prot
Match: G6PI1_CLAAR (Glucose-6-phosphate isomerase, cytosolic 1 OS=Clarkia arcuata GN=PGIC1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.802e-52
Identity = 98/138 (71.01%), Postives = 117/138 (84.78%), Query Frame = 1
Query:  142 MASSTLICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKKFSETIHSGSW 555
            MAS  LI +TE WKDLK H++ IK+THLR+LM DT+RCQSMMVEFD I LDYSRQ A+  T++KLY+LA+AA L  KI+RMYNG+ INSTENRSVLHVALRAPR++AI SDGKNVVP+VW VLDKIK FS+ + +GSW
Sbjct:    1 MASPALISETEAWKDLKAHLEGIKRTHLRELMGDTERCQSMMVEFDNIFLDYSRQQASSDTINKLYKLADAAHLKQKIDRMYNGDHINSTENRSVLHVALRAPRNSAICSDGKNVVPDVWNVLDKIKDFSDRVRNGSW 138          
BLAST of FC877228 vs. ExPASy Swiss-Prot
Match: G6PI2_CLACO (Glucose-6-phosphate isomerase, cytosolic 2 OS=Clarkia concinna GN=PGIC2 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.152e-52
Identity = 97/138 (70.29%), Postives = 118/138 (85.51%), Query Frame = 1
Query:  142 MASSTLICDTEPWKDLKNHVQEIKKTHLRDLMSDTDRCQSMMVEFDGILLDYSRQNATLKTMDKLYQLAEAAQLNNKINRMYNGEKINSTENRSVLHVALRAPRDAAINSDGKNVVPEVWKVLDKIKKFSETIHSGSW 555
            MA+ +LI +TE WKDLK H++ IK+THLR+LM DT+RCQSMMVEFD I LDYSRQ A+  T++KL++LA+AA L  KI+RMYNG+ INSTENRSVLHVALRAPR++AI SDGKNVVP+VW VLDKIK FSE + +GSW
Sbjct:    1 MATPSLISETEAWKDLKAHLEGIKRTHLRELMGDTERCQSMMVEFDNIFLDYSRQQASPDTINKLFKLADAAHLKRKIDRMYNGDHINSTENRSVLHVALRAPRNSAICSDGKNVVPDVWSVLDKIKDFSERVRNGSW 138          
The following BLAST results are available for this feature:
BLAST of FC877228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 353
Match NameE-valueIdentityDescription
G6PI_SPIOL5.828e-5878.26Glucose-6-phosphate isomerase, cytosolic OS=Spinac... [more]
G6PI_ARAGE1.298e-5778.42Glucose-6-phosphate isomerase, cytosolic OS=Arabis... [more]
G6PI_ARATH2.215e-5777.70Glucose-6-phosphate isomerase, cytosolic OS=Arabid... [more]
G6PI_ARALP1.215e-5576.98Glucose-6-phosphate isomerase, cytosolic OS=Arabid... [more]
G6PI_OENME2.534e-5372.46Glucose-6-phosphate isomerase, cytosolic OS=Oenoth... [more]
G6PI2_CLAXA1.258e-5271.74Glucose-6-phosphate isomerase, cytosolic 2 OS=Clar... [more]
G6PI2_CLALE1.642e-5271.74Glucose-6-phosphate isomerase, cytosolic 2A OS=Cla... [more]
G6PI1_CLAMI2.802e-5271.74Glucose-6-phosphate isomerase, cytosolic 1 OS=Clar... [more]
G6PI1_CLAAR2.802e-5271.01Glucose-6-phosphate isomerase, cytosolic 1 OS=Clar... [more]
G6PI2_CLACO8.152e-5270.29Glucose-6-phosphate isomerase, cytosolic 2 OS=Clar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2BB08RM1 EHR Citrus clementina cDNA clone KN0AAN2BB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877228 ID=FC877228; Name=FC877228; organism=Citrus clementina; type=EST; length=557bp
GCACGAGGCCTCGTGCCGGCACGAGGGCTTCATGCTTTTTGGTTCTTACG
CTCTCTATATTTCCAATTGCCCGCAATCCACCTCATCCAATTCTTCTACA
AATCTCTCTCTTTCCTTGGTTTCTCCTTCAGGATTTTGCAAATGGCTTCA
TCAACTCTAATTTGTGACACCGAGCCATGGAAGGACTTGAAGAACCATGT
GCAGGAAATTAAAAAGACTCATTTACGTGATTTGATGAGTGACACTGATC
GATGCCAATCAATGATGGTGGAGTTTGACGGGATTCTGTTGGACTACTCA
CGGCAAAATGCCACGCTTAAGACAATGGACAAACTCTATCAACTGGCAGA
GGCTGCTCAACTCAATAATAAGATTAACCGGATGTACAATGGGGAAAAAA
TTAACAGCACAGAGAATAGGTCTGTGCTTCATGTAGCTCTTCGTGCTCCA
AGGGATGCTGCCATAAATAGTGATGGGAAGAATGTGGTTCCAGAAGTTTG
GAAAGTTCTGGACAAGATAAAAAAATTTTCTGAGACAATCCACAGTGGTT
CCTGGGT
back to top