FC877231

Overview
NameFC877231
Unique NameFC877231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15486 contig Ccv1_Contig15486:12..656. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877231 vs. ExPASy Swiss-Prot
Match: RL11_MEDSA (60S ribosomal protein L11 OS=Medicago sativa GN=RPL11 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.122e-96
Identity = 176/180 (97.78%), Postives = 178/180 (98.89%), Query Frame = 3
Query:   60 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRXCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 599
            MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRR CK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ I
Sbjct:    1 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180          
BLAST of FC877231 vs. ExPASy Swiss-Prot
Match: RL112_ARATH (60S ribosomal protein L11-2 OS=Arabidopsis thaliana GN=RPL11B PE=2 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 2.116e-95
Identity = 172/180 (95.56%), Postives = 178/180 (98.89%), Query Frame = 3
Query:   60 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRXCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 599
            MASEKKLSNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLERPGYRV RRR CK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180          
BLAST of FC877231 vs. ExPASy Swiss-Prot
Match: RL111_ARATH (60S ribosomal protein L11-1 OS=Arabidopsis thaliana GN=RPL11A PE=1 SV=2)

HSP 1 Score: 348.206 bits (892), Expect = 2.116e-95
Identity = 172/180 (95.56%), Postives = 178/180 (98.89%), Query Frame = 3
Query:   60 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRXCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 599
            MASEKKLSNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLERPGYRV RRR CK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQNI
Sbjct:    1 MASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNI 180          
BLAST of FC877231 vs. ExPASy Swiss-Prot
Match: RL11_ORYSJ (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica GN=RPL11 PE=2 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.190e-92
Identity = 168/178 (94.38%), Postives = 174/178 (97.75%), Query Frame = 3
Query:   60 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRXCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 593
            MASEKK SNPMREIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLER GYRV RRR CKSRVGIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178          
BLAST of FC877231 vs. ExPASy Swiss-Prot
Match: RL11_ORYSI (60S ribosomal protein L11 OS=Oryza sativa subsp. indica GN=RPL11 PE=2 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 2.190e-92
Identity = 168/178 (94.38%), Postives = 174/178 (97.75%), Query Frame = 3
Query:   60 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRXCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 593
            MASEKK SNPMREIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDF+VVLER GYRV RRR CKSRVGIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct:    1 MASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178          
BLAST of FC877231 vs. ExPASy Swiss-Prot
Match: RL11_SCHPO (60S ribosomal protein L11 OS=Schizosaccharomyces pombe GN=rpl11a PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 8.952e-70
Identity = 125/172 (72.67%), Postives = 147/172 (85.47%), Query Frame = 3
Query:   72 KKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRXCKSRVGIQHRVTKEDAMKWFQVKYEGVILNK 587
            +K  NPM+E+++ KLVLNIS+GESGDRLTRAAKVLEQLSGQTPVFSKARYT+R FGIRRNEKIAC+VTVRG KA ++LE GLKVKEYEL +RNFS TG FGFGIQEHIDLGIKYDPS GIYGMDF+VV++RPG RV RR+  + RVG  H++  ED + WF+ KY+ V+L K
Sbjct:    3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVLGK 174          
BLAST of FC877231 vs. ExPASy Swiss-Prot
Match: RL11_NEUCR (60S ribosomal protein L11 OS=Neurospora crassa GN=rpl-11 PE=3 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 3.402e-69
Identity = 123/173 (71.10%), Postives = 149/173 (86.13%), Query Frame = 3
Query:   60 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRXCKSRVGIQHRVTKEDAMKWFQVKYEGVI 578
            M++E+K  NPMRE+++QKLVLNI VGESGDRLTRAAKVLEQLSGQTPV+SKARYTVR+FGIRRNEKI+ +VTVRG KA ++LE GLKVKEYEL +RNFS+TG FGFGI EHIDLGIKYDP  GIYGMDF+  + RPG RV RRR  KSRVG  HR+T++D +KWF+ +++ ++
Sbjct:    1 MSTEQKAQNPMRELRIQKLVLNICVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRTFGIRRNEKISVHVTVRGPKAEEILERGLKVKEYELRKRNFSETGNFGFGISEHIDLGIKYDPGIGIYGMDFYCCMTRPGERVSRRRRAKSRVGATHRITRDDTVKWFKSRFDAIV 173          
BLAST of FC877231 vs. ExPASy Swiss-Prot
Match: RL11_DROME (60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 4.443e-69
Identity = 128/177 (72.32%), Postives = 144/177 (81.36%), Query Frame = 3
Query:   54 TRMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRXCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 584
            T+        NPMR++ ++KL LNI VGESGDRLTRAAKVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL RPGY V  R+     VG QHR+TKEDAMKWFQ KY+G+ILN
Sbjct:    5 TKKIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKEDAMKWFQQKYDGIILN 181          
BLAST of FC877231 vs. ExPASy Swiss-Prot
Match: RL11_CAEEL (60S ribosomal protein L11 OS=Caenorhabditis elegans GN=rpl-11.1 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.293e-68
Identity = 127/171 (74.27%), Postives = 143/171 (83.63%), Query Frame = 3
Query:   69 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRXCKSRVGIQHRVTKEDAMKWFQVKYEGVIL 581
            EKK  N MRE+K+QKL LNI VGESGDRLTRAAKVLEQL+GQTPVFSKARYTVR+FGIRRNEKIA + TVRG KA ++LE GLKVKEYEL + NFSDTG FGFG+QEHIDLGIKYDP  GIYGMDF+VVL R G RV +RR    R+G  HRV KE+ +KWFQ KY+G+IL
Sbjct:   12 EKKGRNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182          
BLAST of FC877231 vs. ExPASy Swiss-Prot
Match: RL11_CHLRE (60S ribosomal protein L11 OS=Chlamydomonas reinhardtii GN=RPL11 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 3.761e-68
Identity = 121/167 (72.46%), Postives = 148/167 (88.62%), Query Frame = 3
Query:   90 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRXCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKS 590
            MREI++ KLVLNI+V ESGDRL +AAKVLEQL+ Q PV+ +AR+TVRSF IRRNEKI+CYVTVRG+KA  L++ GL VKE+EL+R+NFSDTG FGFGIQEHIDLG+KYDPSTGIYGMDF+V LER GYRV RRR  K+ VG++H+VTKEDA+KWFQ +++GV+LNK+
Sbjct:    1 MREIRISKLVLNIAVAESGDRLQKAAKVLEQLTSQVPVYGRARFTVRSFAIRRNEKISCYVTVRGEKAYDLVKRGLAVKEFELIRKNFSDTGNFGFGIQEHIDLGLKYDPSTGIYGMDFYVCLERRGYRVARRRKQKAHVGVKHKVTKEDAIKWFQQEFDGVVLNKA 167          
The following BLAST results are available for this feature:
BLAST of FC877231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
RL11_MEDSA1.122e-9697.7860S ribosomal protein L11 OS=Medicago sativa GN=RP... [more]
RL112_ARATH2.116e-9595.5660S ribosomal protein L11-2 OS=Arabidopsis thalian... [more]
RL111_ARATH2.116e-9595.5660S ribosomal protein L11-1 OS=Arabidopsis thalian... [more]
RL11_ORYSJ2.190e-9294.3860S ribosomal protein L11 OS=Oryza sativa subsp. j... [more]
RL11_ORYSI2.190e-9294.3860S ribosomal protein L11 OS=Oryza sativa subsp. i... [more]
RL11_SCHPO8.952e-7072.6760S ribosomal protein L11 OS=Schizosaccharomyces p... [more]
RL11_NEUCR3.402e-6971.1060S ribosomal protein L11 OS=Neurospora crassa GN=... [more]
RL11_DROME4.443e-6972.3260S ribosomal protein L11 OS=Drosophila melanogast... [more]
RL11_CAEEL1.293e-6874.2760S ribosomal protein L11 OS=Caenorhabditis elegan... [more]
RL11_CHLRE3.761e-6872.4660S ribosomal protein L11 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BB12RM1 EHR Citrus clementina cDNA clone KN0AAN2BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877231 ID=FC877231; Name=FC877231; organism=Citrus clementina; type=EST; length=645bp
TCCGTCTCCGTCTTCGTCTTCACTGAGCAGCGGCAGTAACTCATCATCAG
CAAACCCGAATGGCTTCAGAGAAGAAACTTTCGAACCCCATGAGGGAAAT
TAAGGTTCAGAAGCTTGTGCTCAACATCTCCGTTGGTGAAAGTGGAGATC
GTCTCACCAGAGCCGCTAAGGTGCTGGAGCAACTCAGTGGACAGACACCT
GTTTTCTCCAAGGCCAGGTACACTGTTCGGTCTTTTGGGATCAGACGTAA
TGAGAAGATTGCATGCTATGTGACTGTTAGAGGTGACAAGGCAATGCAGC
TTTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGCTTCTGCGTCGAAAT
TTCAGTGACACTGGCTGTTTTGGCTTTGGTATTCAAGAGCATATTGATCT
TGGAATCAAGTATGATCCTTCCACTGGAATTTATGGTATGGATTTCTTTG
TGGTTCTGGAGCGCCCGGGTTATCGTGTAGGTCGCCGCCGTANGTGCAAG
TCTCGTGTTGGGATTCAGCACCGTGTCACGAAGGAAGATGCAATGAAATG
GTTCCAGGTCAAATACGAAGGTGTGATCCTCAACAAGTCCCAGAATATTG
GTGCTTAAGCCCTTTGTGTGATGACGATTTTGCATTTATAGTGTT
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