FC877233

Overview
NameFC877233
Unique NameFC877233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10387 contig Ccv1_Contig10387:1..462. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877233 vs. ExPASy Swiss-Prot
Match: TPK1_HUMAN (Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.905e-17
Identity = 53/156 (33.97%), Postives = 88/156 (56.41%), Query Frame = 3
Query:    3 GGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLR---ILVAGALGGRFDHEAGNINVLYRFSDIR---IILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPI 452
            GGANR+YD              R  + P+ I GD DSIR EV ++YA+ G +++  + DQD TD  KC+  ++     +E+ +L+   I+  G L GRFD    ++N L++ + I    II++ ++  I LL +  +H +++ + +EG  CGLIP+
Sbjct:   47 GGANRLYDIT---------EGERESFLPEFINGDFDSIRPEVREYYATKGCELI-STPDQDHTDFTKCLKMLQ---KKIEEKDLKVDVIVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLL-QPGKHRLHVDTGMEGDWCGLIPV 188          
BLAST of FC877233 vs. ExPASy Swiss-Prot
Match: TPK1_MOUSE (Thiamin pyrophosphokinase 1 OS=Mus musculus GN=Tpk1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16
Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 3
Query:    3 GGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLRILVAGALGGRFDHEAGNINVLYR---FSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPI 452
            GGAN +YD    L   E     R  + P+ + GD DSIR EV ++Y   G  ++  + DQD TD  KC+  ++      E     I+  G LGGRFD    ++N L++    + + II++  D  I LL +  +H +++ + +EG  CGLIP+
Sbjct:   47 GGANHLYD----LTEGE-----RESFLPEFVSGDFDSIRPEVKEYYTKKGCDLI-STPDQDHTDFTKCLQVLQRKIEEKELQVDVIVTLGGLGGRFDQIMASVNTLFQATHITPVPIIIIQKDSLIYLL-QPGKHRLHVDTGMEGSWCGLIPV 188          
BLAST of FC877233 vs. ExPASy Swiss-Prot
Match: TPK1_BOVIN (Thiamin pyrophosphokinase 1 OS=Bos taurus GN=TPK1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.789e-15
Identity = 49/156 (31.41%), Postives = 85/156 (54.49%), Query Frame = 3
Query:    3 GGANRVYDELPQLFPHEDPSDIRRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNLR---ILVAGALGGRFDHEAGNINVLY---RFSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPI 452
            GGAN +YD              R  + P+ I GD DSIR EV + YA  G +++  + DQD TD  KC+  ++     +E+ +L+   I+  G L GRFD    +++ L+   + + + +I++ ++  I LL +  +H +++ + +EG  CGLIP+
Sbjct:   47 GGANHLYDVT---------EGERESFLPEFISGDFDSIRPEVREHYAIKGCEII-STPDQDHTDFTKCLEVLQ---KKIEEKDLQVDMIVTLGGLAGRFDQIMASVSTLFQAPQITSLPVIIIQEESLIYLL-QPGKHKLHVDTGMEGDWCGLIPV 188          
The following BLAST results are available for this feature:
BLAST of FC877233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TPK1_HUMAN6.905e-1733.97Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK... [more]
TPK1_MOUSE4.476e-1633.99Thiamin pyrophosphokinase 1 OS=Mus musculus GN=Tpk... [more]
TPK1_BOVIN3.789e-1531.41Thiamin pyrophosphokinase 1 OS=Bos taurus GN=TPK1 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2BC02RM1 EHR Citrus clementina cDNA clone KN0AAN2BC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877233 ID=FC877233; Name=FC877233; organism=Citrus clementina; type=EST; length=462bp
ATGGAGGCGCTAACCGTGTCTATGATGAATTGCCTCAACTTTTTCCTCAT
GAAGATCCTTCTGATATTCGCCGCAGGTACAAGCCAGACCTCATTAAAGG
AGACATGGATTCAATCCGAAAAGAAGTAATGGATTTTTATGCAAGTTTGG
GAACCAAAGTGGTAGATGAATCGCATGATCAGGACACCACGGACCTACAT
AAATGTGTAGCATATATTCGCGACTGCACACCAAACTTAGAGAAGTCTAA
TCTCCGCATTCTTGTTGCTGGGGCACTTGGTGGACGGTTTGACCATGAGG
CTGGAAACATAAATGTTTTATATCGCTTCTCAGACATACGGATAATACTT
TTATCTGATGATTGCCATATCCAACTTCTCCCGAAAACTCACCGCCACGA
TATCTACATACAATCTTCTGTAGAGGGTCCACATTGTGGACTCATCCCTA
TTTGGGATGCCA
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