FC877240

Overview
NameFC877240
Unique NameFC877240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig524 contig Ccv1_Contig524:37..509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877240 vs. ExPASy Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 5.733e-25
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 1
Query:   25 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 291
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of FC877240 vs. ExPASy Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 5.733e-25
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 1
Query:   25 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 291
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of FC877240 vs. ExPASy Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 5.733e-25
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 1
Query:   25 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 291
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100          
BLAST of FC877240 vs. ExPASy Swiss-Prot
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 9.779e-25
Identity = 57/93 (61.29%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   19 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLRTA 297
            EE  V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL                     R  +R +  LFVRGDGVIL+SPPLRT+
Sbjct:    5 EEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97          
BLAST of FC877240 vs. ExPASy Swiss-Prot
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 7.252e-20
Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 1
Query:   16 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPP 285
            E   AV EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LG                    +T R+    LFVRGD VIL++PP
Sbjct:    2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91          
The following BLAST results are available for this feature:
BLAST of FC877240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM3_MOUSE5.733e-2561.80U6 snRNA-associated Sm-like protein LSm3 OS=Mus mu... [more]
LSM3_HUMAN5.733e-2561.80U6 snRNA-associated Sm-like protein LSm3 OS=Homo s... [more]
LSM3_BOVIN5.733e-2561.80U6 snRNA-associated Sm-like protein LSm3 OS=Bos ta... [more]
LSM3_DICDI9.779e-2561.29Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
LSM3_SCHPO7.252e-2053.33Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2BC09RM1 EHR Citrus clementina cDNA clone KN0AAN2BC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877240 ID=FC877240; Name=FC877240; organism=Citrus clementina; type=EST; length=473bp
GCACGAGGGGCAAGCGAAGAAGAAAGCGCAGTGAAGGAGCCGTTGGATCT
CATAAGACTCAGCCTCGACGAGCGCATCTACGTTAAGCTCCGATCCGACC
GTGAACTCCGCGGCAAACTCCATGCATATGATCAACATTTAAACATGATT
CTTGGGGACGTCGAAGAAGTTGTTACTACAGTGGAAATCGATGATGAAAC
TCATGAAGAGATTGTTCGGACTACAAGGCGTACTGTTCCGTTTCTCTTTG
TAAGAGGGGATGGTGTCATCCTAGTTTCTCCTCCACTGAGGACAGCTTAA
ATCGAAGAACAGGGTGCACACTCGATGAAGAAACCACCAATTTTACATTA
ATGCTTTTCTTTCTGTCACTGTTTTTGCATTTCCTAGTTTAACATCTCAA
ACTGATTACATGCTAAGTTGGCAATCATGAAATATCACATGTTGTTACGG
CGGGCCTTGAATTTGTATTAAAA
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