FC877240
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877240 vs. ExPASy Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 5.733e-25 Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 1 Query: 25 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 291 + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG ++T+R +P LFVRGDGV+LV+PPLR Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
BLAST of FC877240 vs. ExPASy Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 5.733e-25 Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 1 Query: 25 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 291 + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG ++T+R +P LFVRGDGV+LV+PPLR Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
BLAST of FC877240 vs. ExPASy Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3) HSP 1 Score: 113.235 bits (282), Expect = 5.733e-25 Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 1 Query: 25 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 291 + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG ++T+R +P LFVRGDGV+LV+PPLR Sbjct: 12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
BLAST of FC877240 vs. ExPASy Swiss-Prot
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 9.779e-25 Identity = 57/93 (61.29%), Postives = 64/93 (68.82%), Query Frame = 1 Query: 19 EESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLRTA 297 EE V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL R +R + LFVRGDGVIL+SPPLRT+ Sbjct: 5 EEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97
BLAST of FC877240 vs. ExPASy Swiss-Prot
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 7.252e-20 Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 1 Query: 16 EEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPP 285 E AV EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LG +T R+ LFVRGD VIL++PP Sbjct: 2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91 The following BLAST results are available for this feature:
BLAST of FC877240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC877240 ID=FC877240; Name=FC877240; organism=Citrus clementina; type=EST; length=473bpback to top |