FC877241
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: C3H21_ARATH (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=2 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 2.739e-45 Identity = 87/115 (75.65%), Postives = 95/115 (82.61%), Query Frame = 2 Query: 65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409 MPPKQQ KA+LAKKQK VEDKTFGLKNKNKSKNVQKYVQ+LKQ+VQPKPD +K LN+LFK+A+SQPKVPVGVDP SILCEF+KAGQCQKGFKCKFSHDLN Sbjct: 1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKKEEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLN 115
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: C3H11_ORYSJ (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2) HSP 1 Score: 171.4 bits (433), Expect = 1.272e-42 Identity = 85/117 (72.65%), Postives = 93/117 (79.49%), Query Frame = 2 Query: 65 MPPKQQ--SKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409 MPPK+ SKA+LAKKQK+VEDKTFGLKNKNKSKNVQKYVQ+L Q VQPKPD +K LNDLFK+AVSQPKVPVGVDP SI+CEF+K GQCQKGFKCKFSHDLN Sbjct: 1 MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLN 117
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_RAT (Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.788e-20 Identity = 57/126 (45.24%), Postives = 73/126 (57.94%), Query Frame = 2 Query: 65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDL 406 MPPK+Q+ KAE KK+KI+EDKTFGLKNK +K QK+++ + V Q P Q S+ LN+LFK V+ K+ G DP S++C F+K GQC KG KCKFSHDL Sbjct: 1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDL 125
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_MOUSE (Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 1.788e-20 Identity = 57/126 (45.24%), Postives = 73/126 (57.94%), Query Frame = 2 Query: 65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDL 406 MPPK+Q+ KAE KK+KI+EDKTFGLKNK +K QK+++ + V Q P Q S+ LN+LFK V+ K+ G DP S++C F+K GQC KG KCKFSHDL Sbjct: 1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDL 125
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_HUMAN (Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.788e-20 Identity = 57/126 (45.24%), Postives = 73/126 (57.94%), Query Frame = 2 Query: 65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDL 406 MPPK+Q+ KAE KK+KI+EDKTFGLKNK +K QK+++ + V Q P Q S+ LN+LFK V+ K+ G DP S++C F+K GQC KG KCKFSHDL Sbjct: 1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDL 125
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_BOVIN (Zinc finger CCCH domain-containing protein 15 OS=Bos taurus GN=ZC3H15 PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.788e-20 Identity = 57/126 (45.24%), Postives = 73/126 (57.94%), Query Frame = 2 Query: 65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDL 406 MPPK+Q+ KAE KK+KI+EDKTFGLKNK +K QK+++ + V Q P Q S+ LN+LFK V+ K+ G DP S++C F+K GQC KG KCKFSHDL Sbjct: 1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDL 125
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENTR (Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis GN=zc3h15 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.049e-20 Identity = 55/119 (46.22%), Postives = 69/119 (57.98%), Query Frame = 2 Query: 71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409 P+ K E KK+KI+EDKTFGLKNK +K QK+++N+ V Q P Q++ LNDLFK V+ KV G DP S++C FYK GQC KG KCKFSHDL+ Sbjct: 10 PQSGKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVIHQVKFGQQNPRLVAQAEGEKKTKKDDKKKELLELNDLFKPVVAAQKVSKGADPKSVVCAFYKQGQCTKGDKCKFSHDLS 127
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: TMA46_YEAST (Translation machinery-associated protein 46 OS=Saccharomyces cerevisiae GN=TMA46 PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 3.982e-20 Identity = 48/115 (41.74%), Postives = 67/115 (58.26%), Query Frame = 2 Query: 65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409 MPPK+ +A+ A K+K DKTFG+KNKN+S VQKY++ ++ PK ++ ++ LF V+ +V GVDP S++C +K G C KG KCKFSHDLN Sbjct: 1 MPPKKGKQAQAAGKKKDNVDKTFGMKNKNRSTKVQKYIKQVQSQSDPKKEEMRLKKLEEKKRREAEEAERRALFN-PVADQRVRAGVDPKSMVCALFKLGNCNKGAKCKFSHDLN 114
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENLA (Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis GN=zc3h15 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.872e-20 Identity = 54/119 (45.38%), Postives = 68/119 (57.14%), Query Frame = 2 Query: 71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409 P+ K E KK+KI+EDKTFGLKNK +K QK+++N+ V Q P Q++ LNDLFK V KV G DP S++C F+K GQC KG KCKFSHDL+ Sbjct: 10 PQASKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVTHQVKSGQQNPRLVAQAEGDKKNKKDDKMKELQELNDLFKPVVVAQKVSKGADPKSVVCAFFKQGQCTKGDKCKFSHDLS 127
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_DANRE (Zinc finger CCCH domain-containing protein 15 OS=Danio rerio GN=zc3h15 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 4.403e-19 Identity = 56/132 (42.42%), Postives = 74/132 (56.06%), Query Frame = 2 Query: 65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYV-----------QNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409 MPPK+ + K + KK+KI+EDKTFGLKNK +K QK++ QN +Q + +++K LN+LFK V+ KV GVDP S+LC F+K GQC KG KCKFSHDL+ Sbjct: 1 MPPKKPAPAAANKKTQEKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTQQVKFGQQNARQIAAAESEKTK-----KKDDKKKELSELNELFKPVVAAQKVSKGVDPKSVLCAFFKQGQCTKGDKCKFSHDLS 126 The following BLAST results are available for this feature:
BLAST of FC877241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877241 ID=FC877241; Name=FC877241; organism=Citrus clementina; type=EST; length=410bpback to top |