FC877241

Overview
NameFC877241
Unique NameFC877241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length410
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10417 contig Ccv1_Contig10417:6..415. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: C3H21_ARATH (Zinc finger CCCH domain-containing protein 21 OS=Arabidopsis thaliana GN=At2g20280 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 2.739e-45
Identity = 87/115 (75.65%), Postives = 95/115 (82.61%), Query Frame = 2
Query:   65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409
            MPPKQQ KA+LAKKQK VEDKTFGLKNKNKSKNVQKYVQ+LKQ+VQPKPD +K                LN+LFK+A+SQPKVPVGVDP SILCEF+KAGQCQKGFKCKFSHDLN
Sbjct:    1 MPPKQQPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKKEEEKAREQELNELFKVAISQPKVPVGVDPKSILCEFFKAGQCQKGFKCKFSHDLN 115          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: C3H11_ORYSJ (Zinc finger CCCH domain-containing protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0834700 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 1.272e-42
Identity = 85/117 (72.65%), Postives = 93/117 (79.49%), Query Frame = 2
Query:   65 MPPKQQ--SKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409
            MPPK+   SKA+LAKKQK+VEDKTFGLKNKNKSKNVQKYVQ+L Q VQPKPD +K                LNDLFK+AVSQPKVPVGVDP SI+CEF+K GQCQKGFKCKFSHDLN
Sbjct:    1 MPPKKAAPSKADLAKKQKVVEDKTFGLKNKNKSKNVQKYVQSLHQAVQPKPDPTKTAAKKKKEEEKAREKELNDLFKVAVSQPKVPVGVDPKSIVCEFFKVGQCQKGFKCKFSHDLN 117          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_RAT (Zinc finger CCCH domain-containing protein 15 OS=Rattus norvegicus GN=Zc3h15 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.788e-20
Identity = 57/126 (45.24%), Postives = 73/126 (57.94%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDL 406
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DP S++C F+K GQC KG KCKFSHDL
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDL 125          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_MOUSE (Zinc finger CCCH domain-containing protein 15 OS=Mus musculus GN=Zc3h15 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.788e-20
Identity = 57/126 (45.24%), Postives = 73/126 (57.94%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDL 406
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DP S++C F+K GQC KG KCKFSHDL
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDL 125          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_HUMAN (Zinc finger CCCH domain-containing protein 15 OS=Homo sapiens GN=ZC3H15 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.788e-20
Identity = 57/126 (45.24%), Postives = 73/126 (57.94%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDL 406
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DP S++C F+K GQC KG KCKFSHDL
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDL 125          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_BOVIN (Zinc finger CCCH domain-containing protein 15 OS=Bos taurus GN=ZC3H15 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.788e-20
Identity = 57/126 (45.24%), Postives = 73/126 (57.94%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPDQ---SKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDL 406
            MPPK+Q+      KAE  KK+KI+EDKTFGLKNK  +K  QK+++ +   V   Q  P Q   S+                LN+LFK  V+  K+  G DP S++C F+K GQC KG KCKFSHDL
Sbjct:    1 MPPKKQAQAGGSKKAEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISKGADPKSVVCAFFKQGQCTKGDKCKFSHDL 125          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENTR (Zinc finger CCCH domain-containing protein 15 OS=Xenopus tropicalis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.049e-20
Identity = 55/119 (46.22%), Postives = 69/119 (57.98%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V+  KV  G DP S++C FYK GQC KG KCKFSHDL+
Sbjct:   10 PQSGKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVIHQVKFGQQNPRLVAQAEGEKKTKKDDKKKELLELNDLFKPVVAAQKVSKGADPKSVVCAFYKQGQCTKGDKCKFSHDLS 127          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: TMA46_YEAST (Translation machinery-associated protein 46 OS=Saccharomyces cerevisiae GN=TMA46 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.982e-20
Identity = 48/115 (41.74%), Postives = 67/115 (58.26%), Query Frame = 2
Query:   65 MPPKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409
            MPPK+  +A+ A K+K   DKTFG+KNKN+S  VQKY++ ++    PK ++ ++                  LF   V+  +V  GVDP S++C  +K G C KG KCKFSHDLN
Sbjct:    1 MPPKKGKQAQAAGKKKDNVDKTFGMKNKNRSTKVQKYIKQVQSQSDPKKEEMRLKKLEEKKRREAEEAERRALFN-PVADQRVRAGVDPKSMVCALFKLGNCNKGAKCKFSHDLN 114          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_XENLA (Zinc finger CCCH domain-containing protein 15 OS=Xenopus laevis GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.872e-20
Identity = 54/119 (45.38%), Postives = 68/119 (57.14%), Query Frame = 2
Query:   71 PKQQSKAELAKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQNV---QPKPD---QSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409
            P+   K E  KK+KI+EDKTFGLKNK  +K  QK+++N+   V   Q  P    Q++                LNDLFK  V   KV  G DP S++C F+K GQC KG KCKFSHDL+
Sbjct:   10 PQASKKTEQKKKEKIIEDKTFGLKNKKGAKQ-QKFIKNVTHQVKSGQQNPRLVAQAEGDKKNKKDDKMKELQELNDLFKPVVVAQKVSKGADPKSVVCAFFKQGQCTKGDKCKFSHDLS 127          
BLAST of FC877241 vs. ExPASy Swiss-Prot
Match: ZC3HF_DANRE (Zinc finger CCCH domain-containing protein 15 OS=Danio rerio GN=zc3h15 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.403e-19
Identity = 56/132 (42.42%), Postives = 74/132 (56.06%), Query Frame = 2
Query:   65 MPPKQQS------KAELAKKQKIVEDKTFGLKNKNKSKNVQKYV-----------QNLKQNVQPKPDQSKVXXXXXXXXXXXXXXXLNDLFKIAVSQPKVPVGVDPXSILCEFYKAGQCQKGFKCKFSHDLN 409
            MPPK+ +      K +  KK+KI+EDKTFGLKNK  +K  QK++           QN +Q    + +++K                LN+LFK  V+  KV  GVDP S+LC F+K GQC KG KCKFSHDL+
Sbjct:    1 MPPKKPAPAAANKKTQEKKKEKIIEDKTFGLKNKKGAKQ-QKFIKAVTQQVKFGQQNARQIAAAESEKTK-----KKDDKKKELSELNELFKPVVAAQKVSKGVDPKSVLCAFFKQGQCTKGDKCKFSHDLS 126          
The following BLAST results are available for this feature:
BLAST of FC877241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
C3H21_ARATH2.739e-4575.65Zinc finger CCCH domain-containing protein 21 OS=A... [more]
C3H11_ORYSJ1.272e-4272.65Zinc finger CCCH domain-containing protein 11 OS=O... [more]
ZC3HF_RAT1.788e-2045.24Zinc finger CCCH domain-containing protein 15 OS=R... [more]
ZC3HF_MOUSE1.788e-2045.24Zinc finger CCCH domain-containing protein 15 OS=M... [more]
ZC3HF_HUMAN1.788e-2045.24Zinc finger CCCH domain-containing protein 15 OS=H... [more]
ZC3HF_BOVIN1.788e-2045.24Zinc finger CCCH domain-containing protein 15 OS=B... [more]
ZC3HF_XENTR3.049e-2046.22Zinc finger CCCH domain-containing protein 15 OS=X... [more]
TMA46_YEAST3.982e-2041.74Translation machinery-associated protein 46 OS=Sac... [more]
ZC3HF_XENLA8.872e-2045.38Zinc finger CCCH domain-containing protein 15 OS=X... [more]
ZC3HF_DANRE4.403e-1942.42Zinc finger CCCH domain-containing protein 15 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2BC10RM1 EHR Citrus clementina cDNA clone KN0AAN2BC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877241 ID=FC877241; Name=FC877241; organism=Citrus clementina; type=EST; length=410bp
GCACGAGGAATTAAATCAAGGATATTTTATTTTGTCTTGTTATTGAATTT
GATGATCATAAAAGATGCCGCCGAAGCAGCAATCGAAAGCAGAATTAGCG
AAGAAGCAGAAGATCGTCGAAGACAAGACCTTCGGTCTTAAGAACAAAAA
CAAAAGCAAAAACGTTCAGAAATATGTTCAGAATCTCAAACAGAACGTTC
AGCCAAAACCCGACCAGTCTAAGGTCGCCGCCAAGAAAAAGAAGGAGGAA
GAGAAGGCTAAAGAGAAAGAGCTGAATGATCTGTTCAAGATTGCTGTTAG
TCAGCCTAAAGTTCCAGTTGGTGTTGATCCTAANTCTATATTGTGCGAGT
TTTATAAAGCGGGACAGTGTCAGAAAGGTTTTAAATGCAAATTCTCACAT
GATTTGAATG
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