FC877242

Overview
NameFC877242
Unique NameFC877242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length623
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877242 vs. ExPASy Swiss-Prot
Match: YBDL_ECOLI (Aminotransferase ybdL OS=Escherichia coli (strain K12) GN=ybdL PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 54/135 (40.00%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   13 APPHLTWGVRQAHSFLTFATSTPMQWAATAALRAPETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPFGHETDIAFCEYLIKEVGVVAIPTSVFYLNPEDGKNLVRFTFCKDEGTLRSAVDRM 417
            AP  ++  +R+ H +LTF+ +TP Q A    LRA   +Y  L   Y  K+ ILV  LN    ++ P  GTYF++VD++      D+ FC++L +E GV AIP SVF  +P   K L+R  F K E TL +A +R+
Sbjct:  250 APAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHK-LIRLCFAKKESTLLAAAERL 383          
BLAST of FC877242 vs. ExPASy Swiss-Prot
Match: KAT_DICDI (Kynurenine--oxoglutarate transaminase OS=Dictyostelium discoideum GN=ccbl PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.220e-13
Identity = 49/154 (31.82%), Postives = 69/154 (44.81%), Query Frame = 1
Query:   16 PPHLTWGVRQAHSFLTFATSTPMQWAATAALRAP--ETYYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHTPF------GHETDIA----------FCEYLIKEVGVVAIPTSVFYLNPEDG--KNLVRFTFCKDEGTLRSAVDRM 417
            P ++   +   H ++ F+  TP Q A   AL  P  + Y++EL   Y  K+  L+  L   G       GTYF++ D +        G +T I              YL  E GV  IP S FY +      +N VRFTFCKD+ TL+ A D +
Sbjct:  277 PSNIIGAIANTHQYVPFSVPTPTQEAVAIALEQPNIKDYFKELATMYQNKRDTLLNSLTQAGLDPVIPQGTYFIMGDTSSIHLQGDQGKDTSITGMGLHLRDWNIARYLTTEYGVTTIPPSAFYCDDHQKIPENFVRFTFCKDDLTLQKAHDNL 430          
BLAST of FC877242 vs. ExPASy Swiss-Prot
Match: BNA3_YEAST (Probable kynurenine--oxoglutarate transaminase BNA3 OS=Saccharomyces cerevisiae GN=BNA3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.598e-12
Identity = 45/142 (31.69%), Postives = 75/142 (52.82%), Query Frame = 1
Query:   43 QAHSFLTFATSTPMQWAATAALRAPET--YYEELKRDYSAKKAILVEGLNAVGFKVFPSSGTYFVVVDHT--------PFGHE-----TDIAFCEYLIKEVGVVAIPTSVFYLNPED--GKNLVRFTFCKDEGTLRSAVDRM 417
            +AH+ + FA+ +P+Q A   ++       Y+E+++++Y  K  I     + +G       GTYFV+VD +        P+  E      D     +LI E+GVVAIP + FY+   +   +NL+RF  CKD+  L +AV+R+
Sbjct:  296 KAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAYLENAVERL 437          
The following BLAST results are available for this feature:
BLAST of FC877242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YBDL_ECOLI9.348e-2140.00Aminotransferase ybdL OS=Escherichia coli (strain ... [more]
KAT_DICDI3.220e-1331.82Kynurenine--oxoglutarate transaminase OS=Dictyoste... [more]
BNA3_YEAST1.598e-1231.69Probable kynurenine--oxoglutarate transaminase BNA... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAN2BC11RM1 EHR Citrus clementina cDNA clone KN0AAN2BC11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877242 ID=FC877242; Name=FC877242; organism=Citrus clementina; type=EST; length=623bp
TTCGGCACGAGGGCTCCACCGCACCTTACATGGGGGGTGCGGCAGGCACA
CTCTTTTCTCACGTTTGCCACATCCACTCCAATGCAGTGGGCAGCTACAG
CAGCCCTTAGAGCTCCGGAGACGTACTATGAGGAGCTAAAGAGAGATTAC
TCGGCAAAGAAGGCAATTTTGGTGGAGGGATTGAATGCTGTTGGTTTCAA
GGTATTCCCATCTAGTGGGACGTACTTTGTGGTTGTAGATCACACCCCAT
TTGGGCACGAAACTGATATTGCATTTTGTGAATATCTGATCAAGGAAGTT
GGGGTTGTGGCAATTCCGACCAGCGTATTTTACTTGAATCCAGAGGATGG
AAAGAATTTGGTGAGATTTACCTTCTGCAAAGATGAAGGAACTTTGAGGT
CTGCAGTTGACAGGATGAAGGAGAAGCTGAGGAGAAAATGATCAAAGTGA
GTGCTAAAGGCTATTTTATTTGAATCAGTTGATGTAGTGGATTAAAGATT
TGAGTAGTGTGATGTTAAGCATGTGGGGATAAATGGTAGGTACTATCCCG
ACAATTTGAAGACAAACTACCATACTTATGAATGAATCAAATTATTTGAA
TTAAAAAAAAAAAAAAAAAAAAA
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