FC877874

Overview
NameFC877874
Unique NameFC877874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length879
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877874_ssr8 microsatellite FC877874_ssr8:8..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11531 contig Ccv1_Contig11531:69..947. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSB11_DICDI (Oxysterol-binding protein 11 OS=Dictyostelium discoideum GN=osbK PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.099e-35
Identity = 75/202 (37.13%), Postives = 116/202 (57.43%), Query Frame = 2
Query:  275 EERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXPCG 877
            E++ + WK +   +G D  SLV+LPV+  EP +VL+   E + +  L++ A  C D   RL+Y +++ ++++ +Y R  KPFNP+LGETFE ++  G      EQVSHHPP+      +E F     S + TKF GNS+DV+  G+  + L   G       P    HN+IFG+ WI+  GD+++ N  TG+K ++ F   G
Sbjct:   88 EDKKSLWKKVGGLVGKDPMSLVSLPVYFFEPLTVLECQLEPLRFVELIEKASTCSDSIDRLMYLTAFNIAVFSSYTRTAKPFNPLLGETFEYIDKQGRYKSFCEQVSHHPPIGIAQTTSEIFDLQQESWITTKFWGNSLDVFSHGQNHLYLNSTGEHFTWKVPSAICHNIIFGKMWIEHYGDLIVENHNTGEKAIINFQKSG 289          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL6_MOUSE (Oxysterol-binding protein-related protein 6 OS=Mus musculus GN=Osbpl6 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.435e-35
Identity = 78/185 (42.16%), Postives = 118/185 (63.78%), Query Frame = 2
Query:  287 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTN 832
            N W +++  IG D+ S V++PV ++EP + LQ + E MEYS LLD A E +DPY R+V  +++A+S Y +  +R   KPFNPVLGET+E +    G  F +EQVSHHPP+SA H E+++F++    + + KF G S+++ PVG   VTL + G         T +HN++ GR WI+  G++ + N
Sbjct:  595 NLWNILRNNIGKDL-SKVSMPVELNEPLNTLQHLCEEMEYSELLDKASETDDPYERMVLVAAFAVSGYCSTYFRAGSKPFNPVLGETYECIREDKGFRFFSEQVSHHPPISACHCESKNFVFWQDIRWKNKFWGKSMEILPVGTLNVTLPKYGDYYVWNKVTTCIHNILSGRRWIEHYGEVTLRN 778          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSB8_DICDI (Oxysterol-binding protein 8 OS=Dictyostelium discoideum GN=osbH PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.435e-35
Identity = 88/235 (37.45%), Postives = 131/235 (55.74%), Query Frame = 2
Query:  179 NGLLGY-EGLEVVNPEGSTEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXPCG 877
            +G L Y +GL   N     E++ D   +G  + E+R    K +  Y+G D+ SL++LPV+I EP S LQ M+E ++Y+ LL  A + +  ++ L Y +++  ++Y    R  KPFNP+LGETFE+V+  G   F+AEQVSHHPP+      +E +   + + L++KF GNS +V   G      K+           T  HN+I G  W+D  GD+V+ N TTG K VL F   G
Sbjct:    3 SGALNYMKGLVGTNENLQVEESGDN--KGDIEPEQRKGLLKQLSSYVGKDITSLISLPVWIFEPVSFLQVMSEPLQYNALLSKASKQDSEFLCLAYLAAFNCALYSTAVRTRKPFNPILGETFEIVDKKGEFRFLAEQVSHHPPIGVSETISEDYTLQLETLLKSKFYGNSSEVEIDGTNHFFNKKTNHHYTWNHLVTCCHNIIIGSLWLDHYGDLVIENHTTGSKAVLKFAKSG 235          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL3_HUMAN (Oxysterol-binding protein-related protein 3 OS=Homo sapiens GN=OSBPL3 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.175e-35
Identity = 77/184 (41.85%), Postives = 118/184 (64.13%), Query Frame = 2
Query:  293 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNL 835
            W +++  IG D+ S V +PV ++EP + LQR+ E +EYS LLD A +   P  R+VY +++A+S Y +  YR   KPFNPVLGET+E +    G  F +EQVSHHPP+SA HAE+ +F++    + + KF G S+++ P+G T VTL   G   +     + +HN++ G+ WI+  G++V+ NL
Sbjct:  529 WNILRNNIGKDL-SKVAMPVELNEPLNTLQRLCEELEYSELLDKAAQIPSPLERMVYVAAFAISAYASSYYRAGSKPFNPVLGETYECIREDKGFQFFSEQVSHHPPISACHAESRNFVFWQDVRWKNKFWGKSMEIVPIGTTHVTLPVFGDHFEWNKVTSCIHNILSGQRWIEHYGEIVIKNL 711          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL6_HUMAN (Oxysterol-binding protein-related protein 6 OS=Homo sapiens GN=OSBPL6 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 9.301e-35
Identity = 77/185 (41.62%), Postives = 117/185 (63.24%), Query Frame = 2
Query:  287 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTN 832
            N W +++  IG D+ S V++PV ++EP + LQ + E MEYS LLD A E +DPY R+V  +++A+S Y +  +R   KPFNPVLGET+E +    G  F +EQVSHHPP+SA H E+++F++    + + KF G S+++ PVG   V L + G         T +HN++ GR WI+  G++ + N
Sbjct:  570 NLWNILRNNIGKDL-SKVSMPVELNEPLNTLQHLCEEMEYSELLDKASETDDPYERMVLVAAFAVSGYCSTYFRAGSKPFNPVLGETYECIREDKGFRFFSEQVSHHPPISACHCESKNFVFWQDIRWKNKFWGKSMEILPVGTLNVMLPKYGDYYVWNKVTTCIHNILSGRRWIEHYGEVTIRN 753          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL1_HUMAN (Oxysterol-binding protein-related protein 1 OS=Homo sapiens GN=OSBPL1A PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.215e-34
Identity = 81/199 (40.70%), Postives = 118/199 (59.30%), Query Frame = 2
Query:  293 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXPCG 877
            W +++K IG ++ S +T+PV  +EP S LQR+ E ME+++L+  A    DP  R+   +++A+S +   + R  KPFNP+LGET+E+V    G   I+EQVSHHPP+SA HAE  N  FI+  +   + KF G S++  P G   + L           P   VHN+I G+ WI+  G++ + N  TGDK VL F PCG
Sbjct:  550 WSILRKCIGMEL-SKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGDKCVLNFKPCG 747          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL1_RAT (Oxysterol-binding protein-related protein 1 OS=Rattus norvegicus GN=Osbpl1a PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.587e-34
Identity = 81/199 (40.70%), Postives = 118/199 (59.30%), Query Frame = 2
Query:  293 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXPCG 877
            W +++K IG ++ S +T+PV  +EP S LQR+ E ME+++L+  A    DP  R+   +++A+S +   + R  KPFNP+LGET+E+V    G   I+EQVSHHPP+SA HAE  N  FI+  +   + KF G S++  P G   + L           P   VHN+I G+ WI+  G++ + N  TGDK VL F PCG
Sbjct:  550 WSILRKCIGMEL-SKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSFSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLEHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGDKCVLNFKPCG 747          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL7_HUMAN (Oxysterol-binding protein-related protein 7 OS=Homo sapiens GN=OSBPL7 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.072e-34
Identity = 78/183 (42.62%), Postives = 118/183 (64.48%), Query Frame = 2
Query:  293 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTN 832
            W +++  IG D+ S V++PV ++EP + LQR+ E +EYS LLD A    DP  R+VY +++A+S Y +  +R   KPFNPVLGET+E      G  FI+EQVSHHPP+SA HAE+E+F +    K + KF G S+++ PVG   V+L R G   +     + +HN++ G+ WI+  G++++ N
Sbjct:  480 WNILRNNIGKDL-SKVSMPVQLNEPLNTLQRLCEELEYSSLLDQASRIADPCERMVYIAAFAVSAYSSTYHRAGCKPFNPVLGETYECERPDRGFRFISEQVSHHPPISACHAESENFAFWQDMKWKNKFWGKSLEIVPVGTVNVSLPRFGDHFEWNKVTSCIHNVLSGQRWIEHYGEVLIRN 661          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL1_MOUSE (Oxysterol-binding protein-related protein 1 OS=Mus musculus GN=Osbpl1a PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.072e-34
Identity = 81/199 (40.70%), Postives = 118/199 (59.30%), Query Frame = 2
Query:  293 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNLTTGDKVVLYFXPCG 877
            W +++K IG ++ S +T+PV  +EP S LQR+ E ME+++L+  A    DP  R+   +++A+S +   + R  KPFNP+LGET+E+V    G   I+EQVSHHPP+SA HAE  N  FI+  +   + KF G S++  P G   + L           P   VHN+I G+ WI+  G++ + N  TGDK VL F PCG
Sbjct:  550 WSILRKCIGMEL-SKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEAEPKGTITLELLDHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGDKCVLNFKPCG 747          
BLAST of FC877874 vs. ExPASy Swiss-Prot
Match: OSBL3_MOUSE (Oxysterol-binding protein-related protein 3 OS=Mus musculus GN=Osbpl3 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.534e-34
Identity = 76/184 (41.30%), Postives = 116/184 (63.04%), Query Frame = 2
Query:  293 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVTSKLRTKFLGNSIDVYPVGRTRVTLKRDGVVLDLVPPPTKVHNLIFGRTWIDSPGDMVMTNL 835
            W +++  IG D+ S V +PV ++EP + LQR+ E +EYS LLD A     P  R+VY +++A+S Y +  +R   KPFNPVLGET+E +    G  F AEQVSHHPP+SA HAE+ +F++    + + KF G S+++ P+G T VTL   G   +     + +HN++ G+ WI+  G++ + NL
Sbjct:  497 WSILRNNIGKDL-SKVAMPVELNEPLNTLQRLCEELEYSELLDKASRIPSPLERMVYVAAFAISAYASSYFRAGSKPFNPVLGETYECIRQDKGFQFFAEQVSHHPPISACHAESGNFVFWQDVRWKNKFWGKSMEIVPIGTTHVTLPAFGDHFEWNKVTSCIHNILSGQRWIEHYGEIDIKNL 679          
The following BLAST results are available for this feature:
BLAST of FC877874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
OSB11_DICDI1.099e-3537.13Oxysterol-binding protein 11 OS=Dictyostelium disc... [more]
OSBL6_MOUSE1.435e-3542.16Oxysterol-binding protein-related protein 6 OS=Mus... [more]
OSB8_DICDI1.435e-3537.45Oxysterol-binding protein 8 OS=Dictyostelium disco... [more]
OSBL3_HUMAN4.175e-3541.85Oxysterol-binding protein-related protein 3 OS=Hom... [more]
OSBL6_HUMAN9.301e-3541.62Oxysterol-binding protein-related protein 6 OS=Hom... [more]
OSBL1_HUMAN1.215e-3440.70Oxysterol-binding protein-related protein 1 OS=Hom... [more]
OSBL1_RAT1.587e-3440.70Oxysterol-binding protein-related protein 1 OS=Rat... [more]
OSBL7_HUMAN2.072e-3442.62Oxysterol-binding protein-related protein 7 OS=Hom... [more]
OSBL1_MOUSE2.072e-3440.70Oxysterol-binding protein-related protein 1 OS=Mus... [more]
OSBL3_MOUSE3.534e-3441.30Oxysterol-binding protein-related protein 3 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA60DA05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877874 ID=FC877874; Name=FC877874; organism=Citrus clementina; type=EST; length=879bp
TAAAACGTCTCTCTCTCTATTCTCTCTAAGCTACGTATTCATTCGATAGC
TGCGAGTATTTTCTCCTGAGATTGTTAATTGAGACATGGCTTCCGATGGA
TCTAAGCAAGGCGGCGGTTTCTTCGCCTCCATCGCCGCCGGTTGGTCGAC
TATCGGCTCCGCCATGAGTAAATCGGTCAACGGTTTATTGGGCTATGAAG
GGCTGGAAGTTGTTAATCCTGAAGGGAGCACGGAAGATGCTGAAGATGAA
GCAAGAAGAGGAAGATGGAAACAGGAGGAAAGGGACAATTACTGGAAGAT
GATGCAAAAGTATATAGGTGCTGATGTTCAATCGTTGGTGACTCTTCCTG
TATTTATTTCAGAGCCAAATTCAGTGCTGCAGAGAATGGCAGAGTTGATG
GAGTACTCCCACCTTCTGGATCTGGCAGATGAATGCGAGGATCCATACAT
GAGATTGGTATATGCTTCATCATGGGCTTTATCAATCTACTTTGCCTATC
GACGGGCCTGGAAGCCATTTAATCCAGTTCTTGGTGAAACTTTTGAAATG
GTTAATCATGGTGGTGTTACATTTATAGCTGAACAAGTTAGTCATCACCC
CCCAATGAGTGCTGGTCATGCCGAAAATGAGCACTTCATTTATGATGTGA
CTTCAAAGTTGAGAACAAAATTTTTAGGAAACTCGATTGATGTTTATCCA
GTTGGAAGGACACGTGTGACACTTAAAAGAGATGGGGTGGTTCTCGATTT
GGTGCCCCCTCCCACAAAGGTTCACAATTTAATTTTTGGACGAACTTGGA
TTGATTCACCGGGGGATATGGTCATGACTAACTTGACCACGGGCGACAAA
GTTGTGTTATATTTTNCACCATGTGGATG
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