FC877929

Overview
NameFC877929
Unique NameFC877929
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length952
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5236 contig Ccv1_Contig5236:48..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877929 vs. ExPASy Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 6.531e-69
Identity = 140/276 (50.72%), Postives = 175/276 (63.41%), Query Frame = 2
Query:   38 ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYSSGISDIELVS 865
            ES +WT+LP ++TS IL ++GAI++L +AQ+VC SW R+C DP MWR IDMHNLGDL DMD++LE MCRHAVDRS G L+ I I YFGT +LL YIA           + C  I+D GF EA+   P              E+L  VG  C  +++ KLN      P+ E DDDA AIAE M  LRHLQL GN L++ GL AILD C +LE LDLR+CFNVNLVG L K C E ++ +RHPNDS HD + G        SS ++     SDI+L+S
Sbjct:   15 ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAVVKLPLEELELSYCSFSV-ESLRVVGQCCLNMKTLKLNKH----PQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVVRHPNDSIHDIDIG--------SSEDEDPYDFSDIDLMS 277          
BLAST of FC877929 vs. ExPASy Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 8.827e-66
Identity = 129/255 (50.59%), Postives = 165/255 (64.71%), Query Frame = 2
Query:   47 DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKI-----ECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGAD 796
            +W +LP+ +TS+IL ++GAI++L +AQ+VC  W R+C DP MWR ID+ N  D     +DLE MCRHAVDRS+G L+ I I Y+GT++L+ YIA           V C+ I+D+G  +A+   P              E+L  +G  CP L++ KLN    R P+I       DD+AKAIAE+M  LRHLQL GN LTN GL AILDGCPHLE LDLRQCFN+NLVG L K C ERI+DLR PNDS  D + G+D
Sbjct:  180 NWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLN----RAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGDLKKRCFERIKDLRCPNDSDDDSDDGSD 430          

HSP 2 Score: 109.768 bits (273), Expect = 2.432e-23
Identity = 59/105 (56.19%), Postives = 71/105 (67.62%), Query Frame = 2
Query:  551 DDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYSSGISDIELVS 865
            DD+  AIAE M  LRHL+LFGN LTN+ L+AILD C HL  LDLR+CFN+NL+G L K C+ERIRDLR P+DST D  F A        S + YS+G  D +  S
Sbjct:   19 DDEPLAIAETMPELRHLKLFGNGLTNLRLEAILDNCVHLVHLDLRRCFNINLLGDLEKRCSERIRDLRRPDDSTADSPFDA--------SSDIYSAGEDDYDFYS 115          
BLAST of FC877929 vs. ExPASy Swiss-Prot
Match: FB221_ARATH (Putative F-box protein At4g05480 OS=Arabidopsis thaliana GN=At4g05480 PE=4 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 6.775e-58
Identity = 123/286 (43.01%), Postives = 165/286 (57.69%), Query Frame = 2
Query:   32 EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRC----------PKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLES-LDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYSSGISDIE 856
            ++E  +W  LP ++T++IL ++   D+L +A+++C +W RIC DP MWR I   NL D    + D E MCRH VD S G LL INIE+F +D LL YI                 ++++G    I+  P              + L+A+G  CP L++ KLN+ G             P +ECDDDA AIAE+M  LRHLQL GN LTN GL AILDGCPHLE  LD+R+CFN+NLVG L K C +RI++LR P+DST DY FG    DF  +  +  + G  + E
Sbjct:   34 DEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKI---NLRDCLMYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEPMTNKGVMNGIEKLPLLETLVIFHSSIKLD-LKAIGHACPQLKTLKLNSLGSELAHDISQVGYIPLLECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNINLVGNLEKRCMKRIKELRRPHDSTADYPFGQASPDFAMNLEDKVTFGRQESE 315          
BLAST of FC877929 vs. ExPASy Swiss-Prot
Match: FBL22_ARATH (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 7.255e-52
Identity = 119/290 (41.03%), Postives = 159/290 (54.83%), Query Frame = 2
Query:    8 SRMSTGTAEQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEY--FGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEF-----GADFQDFCWSSVEDYSSGISDIE 856
            S++     E++  +W +LP D+ S+IL ++  +++L +A++VC SW R+  DP++WR IDM NL  L+ + + +E  CRH VD S G LL  NI+   F T  LL Y+A           V    I+  G  EAI   P             +E  + +G  CP L++ KL   G      E D+DA AIA+ M GL HLQL  N LTN+GL AILDGCPHLE LDLRQCFN+NL G L + C ERI+D R PND   DY +         +D      E+YS G  D E
Sbjct:   13 SQLPVMKGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLYCI-YAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRLR-VKGGQITSVGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKLV--GFWSHLNESDNDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLERQCLERIKDFRCPNDVLDDYNYVIFSDNGSIEDEKGEEEENYSYGSDDTE 298          
BLAST of FC877929 vs. ExPASy Swiss-Prot
Match: FBL21_ARATH (Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana GN=FBL21 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.334e-50
Identity = 114/267 (42.70%), Postives = 147/267 (55.06%), Query Frame = 2
Query:   35 QESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINI-EYFGTDELLQYIAXXXXXXXXXXXVSCY-NISDQGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPK--------------IECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEF 787
            +E  +W  LP ++T++IL ++   D+L +AQ+VC  W RIC DP MWR I   N  D    + D   MCRH VD S G LL IN+ E+F +D LL YI              C+  ++  G   AI   P              + L+A+G  CP L++ KLN+ G   P               +ECDDDA AIAE+M  L HLQL  N LTN GL AILDGCPHLE LD+R+CF ++LVG L K C E I++LR P DST DY +
Sbjct:   41 KERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKI---NTRDCLMYNFDFVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITDRNLRSLGLGM--CFPRVTKLGVVNAIAKIPLLETLEVTHSCIKLD-LKAIGHACPQLKTLKLNSLGRLWPASDKYDSNVLDDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRISLVGNLEKRCLEMIKELRRPGDSTADYPY 301          
BLAST of FC877929 vs. ExPASy Swiss-Prot
Match: FBL9_ARATH (Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.731e-45
Identity = 102/231 (44.16%), Postives = 134/231 (58.01%), Query Frame = 2
Query:   47 DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMH---NLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEA-LEAVGSLCPLLRSFKLNNRGH-RCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNVNLVGKLGK 724
            +W +LP ++TS+IL ++GAI++L +AQRVC SW R+C DP MWR ID+    NL +  ++ + +E +C  AVD S G LL INI+Y      L YIA           V C  +  +G  EA    P             +E  L+ VG  CP LR+ KLN  G  +C    CD  A AIAE M GLRHLQLF N L+  GL AIL+GCPHL++L L QC N+N+VG + K
Sbjct:   20 NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVKC----CDKVALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246          
BLAST of FC877929 vs. ExPASy Swiss-Prot
Match: SKIP1_ARATH (F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.378e-16
Identity = 67/248 (27.02%), Postives = 107/248 (43.15%), Query Frame = 2
Query:   32 EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPVMWRNIDMHNLGD-------LW--DMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCE-AIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLN----NRGH----------RCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDGCPHLESLDLRQCFNVN 703
            E++  DW  L  ++   I+S++   ++ T    V  SWL +C DP +W   D+    D       LW  + +  ++ M R  VD S G L  I + +  +D  L Y A            S  N++D    + A +                 + L  +G  CP LR  K N    +  H           CP+ + D +A AI ++M  L HL++  + L+  GL +I +GCP LE LDL  C +++
Sbjct:    2 EEDGSDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYPESTHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSVPTEYLDACPQ-DGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCVHLS 247          
The following BLAST results are available for this feature:
BLAST of FC877929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SKI19_ARATH6.531e-6950.72F-box protein SKIP19 OS=Arabidopsis thaliana GN=SK... [more]
FBL23_ARATH8.827e-6650.59Putative F-box/LRR-repeat protein 23 OS=Arabidopsi... [more]
FB221_ARATH6.775e-5843.01Putative F-box protein At4g05480 OS=Arabidopsis th... [more]
FBL22_ARATH7.255e-5241.03Putative F-box/LRR-repeat protein 22 OS=Arabidopsi... [more]
FBL21_ARATH2.334e-5042.70Putative F-box/LRR-repeat protein 21 OS=Arabidopsi... [more]
FBL9_ARATH1.731e-4544.16Putative F-box/LRR-repeat protein 9 OS=Arabidopsis... [more]
SKIP1_ARATH8.378e-1627.02F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKI... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA22DG05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877929 ID=FC877929; Name=FC877929; organism=Citrus clementina; type=EST; length=952bp
CAACATTAGCAGAATGAGCACAGGCACGGCGGAGCAAGAATCATGCGACT
GGACGCAGTTGCCGGCGGACGTGACGTCAACGATTCTATCAAAAATCGGC
GCCATCGATGTGCTGACGAGCGCGCAGCGTGTGTGCTCTTCTTGGCTGAG
GATCTGCCACGATCCCGTCATGTGGCGGAACATCGACATGCACAACTTAG
GAGATTTGTGGGACATGGACCATGACTTGGAGAAGATGTGCCGCCACGCT
GTTGACCGTAGCAACGGCCAATTGCTCTCCATCAATATCGAGTACTTCGG
TACCGATGAGCTTCTCCAATACATCGCTAATAGGTCAAGGAATCTCAGGA
ATCTCAGACTTGTGTCATGTTATAACATTTCAGACCAAGGATTTTGTGAA
GCTATTAAAGGGTTTCCACTGCTCGAGGAGCTTGAACTTTCATACTGCTC
ATTATCACAAGAAGCATTGGAAGCTGTTGGGAGCCTTTGCCCACTTCTGA
GATCATTTAAATTGAACAACCGGGGTCACAGGTGCCCAAAAATAGAGTGT
GATGATGATGCGAAAGCTATAGCAGAAAACATGCATGGATTGCGTCATCT
CCAGTTATTTGGAAATGAGCTGACAAATGTGGGGTTGCAGGCTATTCTTG
ATGGCTGTCCTCACCTTGAATCACTTGACCTGCGCCAGTGTTTCAATGTC
AATCTGGTTGGGAAATTGGGGAAGATATGTGCCGAGAGAATAAGAGATTT
ACGACATCCCAATGACTCTACCCATGACTATGAATTCGGTGCAGATTTTC
AAGATTTTTGTTGGTCATCTGTAGAAGATTACTCATCTGGTATTTCCGAT
ATTGAGCTTGTGTCTGATGAAGATGATTACTATGAGTTCTCTGAATATGA
CTTTGGCTATGACTTTGACTATGACTATTTGGTTAATGATTAGGGGTCAA
GT
back to top