FC877949

Overview
NameFC877949
Unique NameFC877949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length910
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877949 vs. ExPASy Swiss-Prot
Match: GNL3_DICDI (Guanine nucleotide-binding protein-like 3 homolog OS=Dictyostelium discoideum GN=gnl3 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.244e-45
Identity = 108/243 (44.44%), Postives = 141/243 (58.02%), Query Frame = 2
Query:  218 KVEKDPGIPNDWPFKEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLEDDDVSMLADAANG----------KEENFGEGTSTASGKNRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKS--SKTAKPSNILQTSDCLGAETLIKLLKNYSXSHEIKKSITVGVIGLPNVGKS 910
            K  KDPGIPN WPFKE                                      D  SM ADA             K++   +G     GK  D+S + FY+E+ KVIE  DVIL+VLDARDP+G RC+++EKM+++   +K +VL+LNKIDLVPRE+V  WLKYLR   P +AFKCSTQ+Q+ NLG +         +++L +++ LGAE L++LLKNYS S  IK S+TVG+IG PNVGKS
Sbjct:   41 KSRKDPGIPNLWPFKEDMLNKIEQQKQKASEEKKNKKEKRRLEQMAEA----RRDIASMAADAKRRESEFQERQQLKQQQKQQGKFEKEGK--DSSLKQFYREVKKVIEAGDVILQVLDARDPMGCRCLEIEKMILERYTNKKIVLILNKIDLVPRENVLMWLKYLRNFYPTLAFKCSTQQQKRNLGQQGGIQPELASNDMLNSTESLGAEQLLQLLKNYSRSLNIKTSVTVGIIGYPNVGKS 277          
BLAST of FC877949 vs. ExPASy Swiss-Prot
Match: GNL3L_HUMAN (Guanine nucleotide-binding protein-like 3-like protein OS=Homo sapiens GN=GNL3L PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.333e-39
Identity = 86/145 (59.31%), Postives = 106/145 (73.10%), Query Frame = 2
Query:  479 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPS-NILQTSDCLGAETLIKLLKNYSXSHEIKKSITVGVIGLPNVGKS 910
            +A+YKE  KV+E SDVILEVLDARDPLG RC  ME+ V++A  +K LVL+LNKIDLVP+E VEKWL YLR ELP VAFK STQ Q  NL   S    + S ++L++  C GAE L+++L NY    E++  I VGV+GLPNVGKS
Sbjct:  122 KAYYKEFRKVVEYSDVILEVLDARDPLGCRCFQMEEAVLRAQGNKKLVLVLNKIDLVPKEVVEKWLDYLRNELPTVAFKASTQHQVKNLNRCSVPVDQASESLLKSKACFGAENLMRVLGNYCRLGEVRTHIRVGVVGLPNVGKS 266          
BLAST of FC877949 vs. ExPASy Swiss-Prot
Match: GNL3L_BOVIN (Guanine nucleotide-binding protein-like 3-like protein OS=Bos taurus GN=GNL3L PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.740e-39
Identity = 85/145 (58.62%), Postives = 107/145 (73.79%), Query Frame = 2
Query:  479 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPS-NILQTSDCLGAETLIKLLKNYSXSHEIKKSITVGVIGLPNVGKS 910
            +A+YKE  KV+E SDVILEVLD+RDPLG RC  ME+ V++A  +K LVL+LNKIDLVP+E VEKWL+YLR ELP VAFK STQ Q  NL   S    + S ++L++  C GAE L+++L NY    E++  I VGV+GLPNVGKS
Sbjct:  115 KAYYKEFHKVVEYSDVILEVLDSRDPLGCRCFQMEETVLRAEGNKKLVLVLNKIDLVPKEVVEKWLEYLRNELPTVAFKASTQHQVKNLNRCSVPVDQASESLLKSKACFGAENLMRVLGNYCRLGEVRTHIRVGVVGLPNVGKS 259          
BLAST of FC877949 vs. ExPASy Swiss-Prot
Match: GNL3_CAEEL (Guanine nucleotide-binding protein-like 3 homolog OS=Caenorhabditis elegans GN=nst-1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.613e-39
Identity = 97/236 (41.10%), Postives = 137/236 (58.05%), Query Frame = 2
Query:  218 KVEKDPGIPNDWPFKEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLEDDDVSMLADAANGKEENFGEGTSTASGKNR-----DNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSXSHEIKKSITVGVIGLPNVGKS 910
            K EK   +PN  PFKE+                                  L  +  SM+A A+    E F +  ++A+   +     D + +A+  E+ K +E++DVI++VLDARDPLG+R   +E  V+K G  K LVLLLNKIDLVPRE+V+KWL+YLR + P +AFK STQEQ++N+G  +S      N  +TS C+GA+ ++K+L NY  + +IK SI VGV+G PNVGKS
Sbjct:   44 KKEKTISVPNSCPFKEEILVQAEQEREKIKVRQEAAKEAAKIHRIEKRKNNLPANFESMVAKASKQGTE-FDKKVASAAEHEKFNTLDDKTIKAYASEVRKTVEIADVIIQVLDARDPLGSRSKSVEDQVLKGG--KRLVLLLNKIDLVPRENVQKWLEYLRGQFPTIAFKASTQEQKSNIGRFNSAIL---NNTETSKCVGADIVMKILANYCRNKDIKTSIRVGVVGFPNVGKS 273          
BLAST of FC877949 vs. ExPASy Swiss-Prot
Match: GNL3_DROME (Guanine nucleotide-binding protein-like 3 homolog OS=Drosophila melanogaster GN=ns1 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.629e-37
Identity = 83/180 (46.11%), Postives = 112/180 (62.22%), Query Frame = 2
Query:  380 DDVSMLADAANGKEENFGEGTSTASGKN---RDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSXSHEIKKSITVGVIGLPNVGKS 910
            +D  M +       EN  +       KN   ++ S + ++KE  KVIE +DV+LEV+DARDPLGTRC ++E+ V  A  +K LVL+LNK DLVPRE++  W+KY R   P  AFK STQ+Q   LG +  +  K    +Q S C+GAE L+ +L NY  +  IK SI VGV+G+PNVGKS
Sbjct:  102 EDADMRSTVHGIMHENDAQDQDEKKYKNAVTKEQSLKQYFKEFRKVIENADVVLEVVDARDPLGTRCNEVERAVRGAPGNKRLVLVLNKADLVPRENLNNWIKYFRRSGPVTAFKASTQDQANRLGRRKLREMKTEKAMQGSVCIGAELLMSMLGNYCRNKGIKTSIRVGVVGIPNVGKS 281          
BLAST of FC877949 vs. ExPASy Swiss-Prot
Match: GNL3L_MOUSE (Guanine nucleotide-binding protein-like 3-like protein OS=Mus musculus GN=Gnl3l PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.084e-37
Identity = 81/146 (55.48%), Postives = 102/146 (69.86%), Query Frame = 2
Query:  479 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRAN--LGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSXSHEIKKSITVGVIGLPNVGKS 910
            +A+YKE  KV+E SDVILEVLDARDPLG RC  ME+ V++A  +K LVL+LNKIDLVP+E VEKWL+YL  ELP VAFK STQ  +       K        ++L++  C GAE L+++L NY    E++  I VGV+GLPNVGKS
Sbjct:  115 KAYYKEFRKVVEYSDVILEVLDARDPLGCRCFQMEETVLRAEGNKKLVLVLNKIDLVPKEIVEKWLEYLLNELPTVAFKASTQHHQVKNLTRCKVPVDQASESLLKSRACFGAENLMRVLGNYCRLGEVRGHIRVGVVGLPNVGKS 260          
BLAST of FC877949 vs. ExPASy Swiss-Prot
Match: GNL3_HUMAN (Guanine nucleotide-binding protein-like 3 OS=Homo sapiens GN=GNL3 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 7.082e-33
Identity = 91/235 (38.72%), Postives = 123/235 (52.34%), Query Frame = 2
Query:  209 GKRKVEKDPGIPNDWPFKEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLEDDDVSMLADAANGKEENFGE-GTSTASGKNRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSXSHEIKKSITVGVIGLPNVGKS 910
            G +K  KDPG+PN  PFKE                                  L  + D+          E+ FG   T   +   + NS + + +EL KVIE SDV+LEVLDARDPLG RC  +E+ ++++G  K LVL+LNK DLVP+E++E WL YL++ELP V F+ ST+ +      K  K  K +   ++  C G E L KLL  +  +    K+I VGVIG PNVGKS
Sbjct:   40 GHKKPRKDPGVPNSAPFKEALLREAELRKQRLEELKQQQKLDRQKELEKKRK-LETNPDIK--PSNVEPMEKEFGLCKTENKAKSGKQNSKKLYCQELKKVIEASDVVLEVLDARDPLGCRCPQVEEAIVQSG-QKKLVLILNKSDLVPKENLESWLNYLKKELPTVVFRASTKPKDKGKITKRVKAKKNAAPFRSEVCFGKEGLWKLLGGFQET--CSKAIRVGVIGFPNVGKS 268          
BLAST of FC877949 vs. ExPASy Swiss-Prot
Match: GNL3_RAT (Guanine nucleotide-binding protein-like 3 OS=Rattus norvegicus GN=Gnl3 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.591e-32
Identity = 89/234 (38.03%), Postives = 117/234 (50.00%), Query Frame = 2
Query:  209 GKRKVEKDPGIPNDWPFKEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLEDDDVSMLADAANGKEENFGEGTSTASGKNRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSXSHEIKKSITVGVIGLPNVGKS 910
            G +K +KDPG+PN  PFKE                                   +  DD     +     +E   E     +   + N  +   +EL KVIE SD++LEVLDARDPLG RC  +E+ V+++G  K LVL+LNK DLVP+E++E WL YL +ELP V FK ST  +     +K  K   P    Q+  C G E L KLL  +  S    K + VGV+G PNVGKS
Sbjct:   40 GHKKPKKDPGVPNSAPFKEALLREAELRKQQLEELKQQQKLDRQKEQERKRKLEISPDDEQSNVET----QEESDEPKIKKAKSGKQNPKKLHCQELKKVIEASDIVLEVLDARDPLGCRCPQVEEAVIQSGCKK-LVLVLNKSDLVPKENLENWLTYLNKELPTVVFKASTNLKNRKKTFKIKKKVVP---FQSKLCCGKEALWKLLGGFQQS--CGKGVQVGVVGFPNVGKS 263          
BLAST of FC877949 vs. ExPASy Swiss-Prot
Match: GNL3_MOUSE (Guanine nucleotide-binding protein-like 3 OS=Mus musculus GN=Gnl3 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.131e-30
Identity = 91/235 (38.72%), Postives = 118/235 (50.21%), Query Frame = 2
Query:  209 GKRKVEKDPGIPNDWPFKEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLEDDDVSMLADAANGKEENFGEGTSTASGKNRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQ-EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSXSHEIKKSITVGVIGLPNVGKS 910
            G +K  KDPG+PN  PFKE                                   LE       ++    +E +  +     +GK   N  +   +EL KVIE SD++LEVLDARDPLG RC  +E+ V+++G  K L+L+LNK DLVP+E++E WL YL +ELP V FK ST  + R     K  K        Q+  C G E L KLL ++  S    K I VGVIG PNVGKS
Sbjct:   40 GHKKPRKDPGVPNSAPFKEALLREAELRKQQLEELKQQQKLDRQKEQERKRK--LEVSPGDEQSNVETREESDEPKRKKAKAGKQ--NPKKLHCQELKKVIEASDIVLEVLDARDPLGCRCPQIEEAVIQSG-SKKLILVLNKSDLVPKENLENWLNYLNKELPTVVFKASTNLKNRKTFKIKKKKVVP----FQSKICCGKEALWKLLGDFQQS--CGKDIQVGVIGFPNVGKS 263          
BLAST of FC877949 vs. ExPASy Swiss-Prot
Match: GNL3_XENLA (Guanine nucleotide-binding protein-like 3 OS=Xenopus laevis GN=gnl3 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.929e-30
Identity = 75/167 (44.91%), Postives = 102/167 (61.08%), Query Frame = 2
Query:  410 NGKEENFGEGTSTASGKNRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSXSHEIKKSITVGVIGLPNVGKS 910
            N  E+           K  D+ D    +++ KV+E SDVI+EVLDARDPLG+RC   E++V+K+ P+K L+LLLNK DLVPRE VEKWL+ L  ELP V F+C  Q Q  +   K  K    ++++    C G + L+K+L +   SH   ++I VGVIG  NVGKS
Sbjct:   98 NNSEKKEKRDKKRKETKTPDDPDVVLCRQVNKVLEQSDVIVEVLDARDPLGSRCSQAEEVVLKS-PNKRLLLLLNKSDLVPREMVEKWLQVLSAELPTVPFRCVAQIQDKSEKKKKKKVPVSADLVTDPKCPGGQVLLKILHSLCPSH--NEAIKVGVIGFANVGKS 261          
The following BLAST results are available for this feature:
BLAST of FC877949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
GNL3_DICDI1.244e-4544.44Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3L_HUMAN1.333e-3959.31Guanine nucleotide-binding protein-like 3-like pro... [more]
GNL3L_BOVIN1.740e-3958.62Guanine nucleotide-binding protein-like 3-like pro... [more]
GNL3_CAEEL6.613e-3941.10Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3_DROME3.629e-3746.11Guanine nucleotide-binding protein-like 3 homolog ... [more]
GNL3L_MOUSE8.084e-3755.48Guanine nucleotide-binding protein-like 3-like pro... [more]
GNL3_HUMAN7.082e-3338.72Guanine nucleotide-binding protein-like 3 OS=Homo ... [more]
GNL3_RAT4.591e-3238.03Guanine nucleotide-binding protein-like 3 OS=Rattu... [more]
GNL3_MOUSE1.131e-3038.72Guanine nucleotide-binding protein-like 3 OS=Mus m... [more]
GNL3_XENLA1.929e-3044.91Guanine nucleotide-binding protein-like 3 OS=Xenop... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA5AH06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA5AH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877949 ID=FC877949; Name=FC877949; organism=Citrus clementina; type=EST; length=910bp
CAAAGACATAACCCAACATTACACACACACTTGCCCTTTCTCCCTCAGAA
GACTTGCATAGGCCCTTTACCAAGAAACCAAGATGGTAAAGAAGAGCAAA
AAGAGTAAGAGTAAGAGAGTTCCGTTGCGTAAGAAATACAAGATTATAAA
GAAAGTAAAAGAGCACCACAAAAAGAAGGCCAAGGAAGCCAAGAAGCTCA
ACTTGAGCGGCAAGCGAAAGGTCGAGAAGGACCCTGGTATCCCCAATGAC
TGGCCATTCAAGGAACAAGAGCTCAAGGCCCTCGAAGCCCGCCGTGCTCG
TGCTCTCAAGGAGTTGGAGCAGAAGAAAGCCGCGCGCAAGGAGAGGGCTC
AAAAAAGGAAGCTGGGTTTACTAGAAGATGATGATGTCTCCATGTTGGCA
GATGCGGCCAATGGGAAAGAAGAAAATTTTGGGGAGGGAACAAGCACTGC
ATCTGGCAAAAATCGGGATAACTCAGATAGAGCTTTCTATAAGGAGTTGG
TTAAAGTCATTGAAGTATCAGATGTTATCTTGGAAGTTCTTGATGCTCGG
GATCCTCTGGGAACTCGTTGCATTGATATGGAAAAGATGGTGATGAAAGC
CGGCCCTGACAAGCACTTAGTGTTGCTACTGAATAAAATTGATCTTGTCC
CACGAGAATCTGTGGAAAAGTGGCTCAAGTATCTTAGGGAGGAATTGCCT
GCTGTTGCTTTTAAGTGCAGCACCCAAGAGCAACGAGCAAACTTAGGGTG
GAAATCCTCAAAGACAGCAAAACCCAGCAATATTTTGCAAACCAGTGATT
GCCTTGGAGCTGAGACTCTTATTAAATTGTTGAAAAACTACTCANGAAGT
CATGAGATCAAGAAGTCTATCACGGTGGGTGTTATTGGTCTGCCTAATGT
TGGCAAGAGT
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