FC877956

Overview
NameFC877956
Unique NameFC877956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length825
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5056 contig Ccv1_Contig5056:76..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC877956 vs. ExPASy Swiss-Prot
Match: Y077_HAEIN (Uncharacterized protein HI0077 OS=Haemophilus influenzae GN=HI0077 PE=4 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.652e-17
Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 2 
Query:  431 LVSAKEIPAPKNSGLPLNAYMLHNLAHVELNAIDLAWDTVVRFSPFT-DILEDG--FFADFAHVADDESRHFAWCSQRLAELGFKYGDMPAHDVLWNQCKKSSDNVAARLAVIPLVQEARGLDAGPRLTQKM 817
            LV+ K++P    +     A  LH +AH+E NAI+L  D   RF     + L +G  F  D+  VA +ES HF+  ++ L  LG++YGD  AH  LW   + ++ ++  R+A++P V EARGLDA P L +K+
Sbjct:   65 LVAPKDVPKRSFATEEGYAATLHAIAHIEFNAINLGLDAAWRFGRNAQEELGEGLAFVKDWLRVAREESTHFSLVNEHLKTLGYQYGDFEAHAGLWEMAQATAHDIWERMALVPRVLEARGLDATPVLQEKI 196
The following BLAST results are available for this feature:
BLAST of FC877956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y077_HAEIN4.652e-1738.64Uncharacterized protein HI0077 OS=Haemophilus infl... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA78AH06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78AH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877956 ID=FC877956; Name=FC877956; organism=Citrus clementina; type=EST; length=825bp
ACACTCAAGCTCTAACTGAAAGGCTATGCTTTGTCCCACACTAAAATACG
CTTGCTTCTCCTCGTGTGTCCGTCCTCAATTCTTGAAAGCCAAATCCTTC
TCTTCTTCTTCATCTCCTTCGTCTTTGCAAGCGTCCACATGGTCGGGTCT
CCAAAAATGGAGGGACGGCCCCCTCAACGGGAACCGCTACTGGGGGCCCA
ACGGCCCAGAACCTCTTCAAGACTCACCACCGTCTCCGTCAGCTGATGAT
AATGATAAAATCGACTCTGCTTCCTCTCTTGCTGAGCTTGGTTCTCTTGT
TCTCTCCACCAGTGATCCTCTGTCAAAATCGAAGCTTTCCCATTTGGCTT
TCTCCAGGTGGCGCATTCTCAATTTGCCTATCGGCGTCTCTGTCCCGCCT
TCTCGACCTGCTCGCCCTCCCAAACCCAAACTGGTTTCAGCAAAGGAAAT
TCCTGCTCCCAAGAACTCAGGTCTGCCCCTTAATGCTTATATGCTGCATA
ATCTTGCACATGTGGAGCTAAACGCTATTGATTTGGCATGGGATACCGTT
GTTCGGTTTTCCCCCTTTACTGACATTCTTGAAGATGGCTTCTTTGCTGA
TTTTGCCCATGTTGCTGATGATGAGAGCCGCCATTTTGCTTGGTGCTCGC
AGAGACTTGCTGAGCTTGGTTTCAAATATGGAGATATGCCTGCTCATGAT
GTACTTTGGAATCAATGTAAAAAATCATCTGACAATGTGGCTGCACGGTT
GGCAGTGATCCCTTTAGTCCAGGAGGCTAGAGGACTTGATGCTGGACCAC
GGTTGACCCAAAAAATGATCGGCTT
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