FC877958

Overview
NameFC877958
Unique NameFC877958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length909
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3145 contig Ccv1_Contig3145:1..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_SCHPO (Coatomer subunit delta OS=Schizosaccharomyces pombe GN=ret2 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.272e-66
Identity = 138/244 (56.56%), Postives = 173/244 (70.90%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSR--AQRLGGGAAIPRQXXXXXXXXXXXXXXITDS-YDSYNAAKNEKFSKPLASRGKGMQLGKKNKTGSMF 836
            MV+L+ +I  R GK I++RQFR+M R RVE+LL+SFP L    SQ+TTVE DNVRFVYQPLDELY+VLITN QSNILQDI TLHL +QVV SIC SL+EREI   AFE+ +AFDE  + GYR+N++L+QIKT+L+MESHEE+IQEI++RNKE+EATEERKR+ KQLE+Q+KE +R  AQ L    A                    +S  +SY+AA         A + KGMQLGKK  T  ++
Sbjct:    1 MVVLAVSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQNTTVESDNVRFVYQPLDELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLGYRDNVSLTQIKTYLEMESHEEKIQEIVSRNKEIEATEERKRRIKQLELQKKEAARRAAQNLPSADAYESIGYQTVNTTFATSNVEDESAMESYHAAAKAS----SAPKAKGMQLGKKKNTSLLY 240          
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_YEAST (Coatomer subunit delta OS=Saccharomyces cerevisiae GN=RET2 PE=1 SV=3)

HSP 1 Score: 198.364 bits (503), Expect = 4.856e-50
Identity = 100/177 (56.50%), Postives = 140/177 (79.10%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKL-ADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQ-GYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSR 638
            MV+L+A+ITTR GKP+L+RQF+ + + RV  LL++F  L ++ +S HT VE  +VR+VY+P D  Y++LITNRQSNI++D++TL+LF+Q + S   S  ++EI   AFE+LS+FDE+V+  GY+ENL+ +Q++T+L MESHEERIQEII RNKE+EATEERKR+AK  E+ RKE  R
Sbjct:    1 MVVLAASITTRQGKPLLSRQFKDLSKDRVLELLSNFQNLVSEISSDHTFVEDKHVRYVYRPFDNYYIILITNRQSNIIKDLATLNLFSQTINSYLSSFQDQEIFHNAFEILSSFDEIVSMGGYKENLSFTQVQTYLSMESHEERIQEIIERNKEIEATEERKRRAK--EIARKEHER 175          
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_CHICK (Coatomer subunit delta OS=Gallus gallus GN=ARCN1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.082e-49
Identity = 93/180 (51.67%), Postives = 139/180 (77.22%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLG 653
            MV+L+AA+ T++GK I++RQF +M R+R+E LLA+FPKL +T  QHT VE ++VR+VYQP+++LYMVLIT + SNIL+D+ TL LF++V+   C++L+E EI+   F+L+ AFDE+V  GYREN+ L+QI+TF +M+SHEE++   +   +E EA  E +RKAK+L+  R++   A+RLG
Sbjct:    1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRD---AERLG 177          
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_RAT (Coatomer subunit delta OS=Rattus norvegicus GN=Arcn1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.413e-49
Identity = 91/182 (50.00%), Postives = 137/182 (75.27%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGG 659
            MV+L+AA+ T++GK I++RQF +M R+R+E LLA+FPKL +T  QHT VE ++VR+VYQP+++LYMVLIT + SNIL+D+ TL LF++V+   C++L+E EI+   F+L+ AFDE+V  GYREN+ L+QI+TF +M+SHEE++   +   +E EA  E +RKAK+L+  R++  R  +   G
Sbjct:    1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPG 182          
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_PONAB (Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.413e-49
Identity = 91/182 (50.00%), Postives = 137/182 (75.27%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGG 659
            MV+L+AA+ T++GK I++RQF +M R+R+E LLA+FPKL +T  QHT VE ++VR+VYQP+++LYMVLIT + SNIL+D+ TL LF++V+   C++L+E EI+   F+L+ AFDE+V  GYREN+ L+QI+TF +M+SHEE++   +   +E EA  E +RKAK+L+  R++  R  +   G
Sbjct:    1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPG 182          
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_MOUSE (Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.413e-49
Identity = 91/182 (50.00%), Postives = 137/182 (75.27%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGG 659
            MV+L+AA+ T++GK I++RQF +M R+R+E LLA+FPKL +T  QHT VE ++VR+VYQP+++LYMVLIT + SNIL+D+ TL LF++V+   C++L+E EI+   F+L+ AFDE+V  GYREN+ L+QI+TF +M+SHEE++   +   +E EA  E +RKAK+L+  R++  R  +   G
Sbjct:    1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPG 182          
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_HUMAN (Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.413e-49
Identity = 91/182 (50.00%), Postives = 137/182 (75.27%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGG 659
            MV+L+AA+ T++GK I++RQF +M R+R+E LLA+FPKL +T  QHT VE ++VR+VYQP+++LYMVLIT + SNIL+D+ TL LF++V+   C++L+E EI+   F+L+ AFDE+V  GYREN+ L+QI+TF +M+SHEE++   +   +E EA  E +RKAK+L+  R++  R  +   G
Sbjct:    1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPG 182          
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_BOVIN (Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.413e-49
Identity = 91/182 (50.00%), Postives = 137/182 (75.27%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGG 659
            MV+L+AA+ T++GK I++RQF +M R+R+E LLA+FPKL +T  QHT VE ++VR+VYQP+++LYMVLIT + SNIL+D+ TL LF++V+   C++L+E EI+   F+L+ AFDE+V  GYREN+ L+QI+TF +M+SHEE++   +   +E EA  E +RKAK+L+  R++  R  +   G
Sbjct:    1 MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKLYMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPG 182          
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD1_ORYSJ (Coatomer subunit delta-1 OS=Oryza sativa subsp. japonica GN=Os05g0310800 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 6.143e-45
Identity = 101/259 (39.00%), Postives = 156/259 (60.23%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLEMQRKEVSRAQRLGGGAAI--PRQXXXXXXXXXXXXXXITD-------SYDSYNAAKNEKFSKPLAS-----RGKGMQLGKKNKTGSMFDQVR 848
            MV+L+A+I ++SGK +++RQF  M R R+E LLA+FPKL  T  QHT VE +NVR+VYQP++ LY++LITN+QSNIL+D+ TL L +++V     SLDE  + + AFEL+ AFDE ++ G +EN+T+ Q+K + +MESHEE+  +++ ++K  E  +  K+KA +L+  R E  +  + GG ++I  PR                           D  + A   K  +P A+     +G GM+LGK  KT    + ++
Sbjct:    1 MVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAISLGNKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMRMERGKLDK-GGYSSISGPRVIEKTFNDMSITGSGFGSGSGLGGLGMDMDSFASKPKGGRPSAAATAPGKGLGMKLGKTQKTNQFLESLK 258          
BLAST of FC877958 vs. ExPASy Swiss-Prot
Match: COPD_DICDI (Coatomer subunit delta OS=Dictyostelium discoideum GN=copd PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.048e-44
Identity = 94/186 (50.54%), Postives = 132/186 (70.97%), Query Frame = 3
Query:  114 MVILSAAITTRSGKPILARQFRQMQRSRVEALLASFPKLADTASQHTTVEQDNVRFVYQPLDELYMVLITNRQSNILQDISTLHLFAQVVGSICKSLDEREITRCAFELLSAFDEVVTQGYRENLTLSQIKTFLDMESHEERIQEIIARNKELEATEERKRKAKQLE-MQRKEVSRAQRLGGGAAI 668
            MV+L+AAI T++GK +L+RQF +M +SRVE LLA+FPKL     QHT +E +N+R+VYQPL+ LY+VLITN+ SNIL+D+ TLHL A++V     + DE +I++ AFEL+  FDEV+  GY+E +TL QIK F+ MESHEE    +  + K+ EA      KAK++E M+ +E+ R +R GG   I
Sbjct:    1 MVVLAAAICTKNGKALLSRQFSEMTKSRVEGLLAAFPKLIGLGRQHTFIETENIRYVYQPLESLYIVLITNKNSNILEDLETLHLLAKLVPEY-SNFDEYDISKNAFELIFTFDEVIAMGYKERVTLQQIKHFISMESHEEERFRMEEKIKQKEAQILASSKAKEIERMRHEEMLRGKRSGGYTGI 185          
The following BLAST results are available for this feature:
BLAST of FC877958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPD_SCHPO1.272e-6656.56Coatomer subunit delta OS=Schizosaccharomyces pomb... [more]
COPD_YEAST4.856e-5056.50Coatomer subunit delta OS=Saccharomyces cerevisiae... [more]
COPD_CHICK1.082e-4951.67Coatomer subunit delta OS=Gallus gallus GN=ARCN1 P... [more]
COPD_RAT1.413e-4950.00Coatomer subunit delta OS=Rattus norvegicus GN=Arc... [more]
COPD_PONAB1.413e-4950.00Coatomer subunit delta OS=Pongo abelii GN=ARCN1 PE... [more]
COPD_MOUSE1.413e-4950.00Coatomer subunit delta OS=Mus musculus GN=Arcn1 PE... [more]
COPD_HUMAN1.413e-4950.00Coatomer subunit delta OS=Homo sapiens GN=ARCN1 PE... [more]
COPD_BOVIN1.413e-4950.00Coatomer subunit delta OS=Bos taurus GN=ARCN1 PE=1... [more]
COPD1_ORYSJ6.143e-4539.00Coatomer subunit delta-1 OS=Oryza sativa subsp. ja... [more]
COPD_DICDI1.048e-4450.54Coatomer subunit delta OS=Dictyostelium discoideum... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DG11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877958 ID=FC877958; Name=FC877958; organism=Citrus clementina; type=EST; length=909bp
AGACAATTCACTAACAAACCCGCGCAAACAATACCAGCACTGCTCGGAGC
AAACATATATTGGCCTTAAGGTTACTAAATTTCTCGCCAGACTAGCACAA
AGAGTTGCCCAAGATGGTCATTCTCTCGGCGGCTATCACCACCCGCTCAG
GGAAGCCCATTCTCGCCAGGCAGTTCCGCCAAATGCAAAGGTCGAGGGTG
GAGGCGCTCCTGGCATCTTTCCCCAAACTCGCAGACACCGCCTCGCAACA
CACCACCGTCGAGCAGGACAATGTCCGCTTCGTATACCAGCCGCTGGACG
AGCTTTACATGGTCCTAATCACAAACCGACAATCGAACATCCTCCAGGAC
ATTTCCACACTGCACCTGTTCGCCCAGGTGGTCGGATCGATTTGCAAGAG
TCTGGACGAGAGGGAGATCACCCGTTGCGCATTCGAGCTATTGTCTGCAT
TCGATGAGGTCGTCACGCAGGGCTACCGGGAAAACCTCACCCTCAGCCAG
ATCAAGACTTTCCTGGACATGGAATCGCACGAGGAGCGCATCCAGGAGAT
TATTGCAAGGAACAAGGAGCTCGAGGCCACAGAAGAGCGCAAGCGCAAGG
CCAAGCAACTTGAGATGCAGCGCAAGGAGGTGAGCCGGGCACAGCGCCTG
GGCGGTGGTGCTGCGATCCCTCGCCAGCCTACATACCCTACATACACACC
TCCACCTGCGGCTCCCGCAATCACGGACAGCTACGATTCCTACAATGCTG
CTAAGAACGAGAAGTTCAGCAAGCCTCTGGCATCACGAGGAAAGGGTATG
CAGCTCGGCAAGAAGAACAAGACCGGCAGCATGTTTGATCAAGTGCGCAA
CGATCTGGGCGCAGAAGCCGAAACGAACGCTCCTTTGGCTGGCGTTCCCG
TACCACAAG
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