FC877962

Overview
NameFC877962
Unique NameFC877962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length913
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC877962 vs. ExPASy Swiss-Prot
Match: ELMOA_DICDI (ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.385e-22
Identity = 60/213 (28.17%), Postives = 98/213 (46.01%), Query Frame = 2
Query:  272 QEERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDRELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAAWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSGRSLHDIVMVKHC*IYCQFYIK*IGLLSFATALVILKRVVSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVL 910
            Q  R + + +R  V F+    +H   L  LW+ TYP  +L   +S+QWK+MG+QG DP TDFR  G   L+NL++FA+ ++  F++++  Q  ++   EYP A AG+ +TF L   +    T       S      S  +      +     +  F+                      +  AF+ +YC  F ++D  W + N TYM F  ++
Sbjct:  362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCTDFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQIDRKER-EYPTATAGIVLTFELYNSIFKMGTPNLNPYNSTTSNTTSNTT--STTNIDDLPFFPLFF---------------------SHPHAFEEVYCTTFQILDSTWDDMNGTYMHFQKIM 550          
BLAST of FC877962 vs. ExPASy Swiss-Prot
Match: ELMOC_DICDI (ELMO domain-containing protein C OS=Dictyostelium discoideum GN=elmoC PE=4 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.179e-19
Identity = 61/223 (27.35%), Postives = 105/223 (47.09%), Query Frame = 2
Query:  260 LTPQQEERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDRELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAAWEYPFAVAGVNITFMLMQMLDLEATKPR-----TFVRSVFLQMLSGRSLHDIVMVKHC*IYCQFYIK*IGLLSFATALVILKRVVSDNEWAFDLLYCVAFVVMDKQWLERNATYMEFNDVLK 913
            +T +Q + ++ L  +    ++++ PDH+E L+ LW+  YP++E     S  WK+ G+Q  DP+ DFRG G + L NL+   +  +   Q +L +        +YPFAVAG+NI+ ++ ++  +     +     +F  S ++ ML   S H                                     N+ AF+ LY + F ++D  W++ NATYM F  V+K
Sbjct:  357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSDDPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQDR------DYPFAVAGINISNLIFEVFQISEDSLQQPWYSSFWSSSYMAMLCSMSRH-------------------------------------NDHAFEELYFLIFNLLDHLWIQMNATYMMFPLVIK 535          
BLAST of FC877962 vs. ExPASy Swiss-Prot
Match: ELMOB_DICDI (ELMO domain-containing protein B OS=Dictyostelium discoideum GN=elmoB PE=4 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.459e-17
Identity = 38/113 (33.63%), Postives = 68/113 (60.18%), Query Frame = 2
Query:  287 RRLKHRMKVYFDASRPDHQEALRALWAATYPDRELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAAWEYPFAVAGVNITFMLMQMLD 625
            + ++ + K+ +D +  +H+ +L  LW A  PD      +S +W  +G+QG DP+TDFRG G + L+NL++F+   S   + +L+    K     YPFA+ G+NIT +++ ++D
Sbjct:  108 KSIEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGILGLDNLIYFSTQHSEDAREILKNSNSKCC---YPFAITGINITALVLNLID 217          
BLAST of FC877962 vs. ExPASy Swiss-Prot
Match: ELMD2_MOUSE (ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.081e-16
Identity = 45/141 (31.91%), Postives = 78/141 (55.32%), Query Frame = 2
Query:  230 KGTYERICINLTPQQEERLRRLKHRM----KVYFDASRPDHQEALRALWAATYPDRELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAAWEYPFAVAGVNITFMLMQMLDLEATK 640
            K T  +IC+     Q    ++L H +    K  +D++   H++ L  LW+   P ++L   IS QW ++G+QG DP TDFRG G + L NL++F++ +++   ++L +    +    Y +A+ G+N+T M   +L  EA K
Sbjct:   87 KDTSFQICMRTCLLQITGYKQLYHDVENVRKKPYDSANAQHEKMLLKLWSLLMPTKKLTARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALK 225          
BLAST of FC877962 vs. ExPASy Swiss-Prot
Match: ELMD2_HUMAN (ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.550e-16
Identity = 39/108 (36.11%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  317 FDASRPDHQEALRALWAATYPDRELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAAWEYPFAVAGVNITFMLMQMLDLEATK 640
            +D+    H+E L  LW    P ++L+  IS QW E+G+QG DP TDFRG G + L NL++F++ +++   ++L +    +    Y +A+ G+N+T M   +L  EA K
Sbjct:  120 YDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALK 225          
BLAST of FC877962 vs. ExPASy Swiss-Prot
Match: ELMD1_PONAB (ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.126e-15
Identity = 46/123 (37.40%), Postives = 65/123 (52.85%), Query Frame = 2
Query:  317 FDASRPDHQEALRALWAATYPDRELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRAAWE---------YPFAVAGVNITFMLMQMLDLEATK 640
            +D+  P H+E L  LW    P+  L   IS QW E+G+QG DP TDFRG G + L NL +FA+  +T+ Q++L      +     +A WE         Y FA+ G+NIT +   +L   A K
Sbjct:  127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALK 249          
BLAST of FC877962 vs. ExPASy Swiss-Prot
Match: ELMD2_BOVIN (ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.695e-15
Identity = 37/108 (34.26%), Postives = 63/108 (58.33%), Query Frame = 2
Query:  317 FDASRPDHQEALRALWAATYPDRELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAAWEYPFAVAGVNITFMLMQMLDLEATK 640
            +D+    H++ L  LW    P ++L   IS QW ++G+QG DP TDFRG G + L NL++F++ +++   ++L +    +    Y +A+ G+N+T M   +L  EA K
Sbjct:  120 YDSDNLQHEKLLIKLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLG--YSYAIVGINLTEMAYSLLKSEALK 225          
BLAST of FC877962 vs. ExPASy Swiss-Prot
Match: ELMD1_BOVIN (ELMO domain-containing protein 1 OS=Bos taurus GN=ELMOD1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.492e-14
Identity = 49/136 (36.03%), Postives = 69/136 (50.74%), Query Frame = 2
Query:  278 ERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDRELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL------RKQGGKRAAWE---------YPFAVAGVNITFMLMQMLDLEATK 640
            E+LRR        +D+  P H+E L  LW    P+  L   IS QW E+G+QG DP TDFRG G + L NL +FA+  + + Q++L      +     +A WE         Y FA+ G+NIT +   +L   A K
Sbjct:  120 EKLRRES------YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALK 249          
BLAST of FC877962 vs. ExPASy Swiss-Prot
Match: ELMD1_MOUSE (ELMO domain-containing protein 1 OS=Mus musculus GN=Elmod1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 3.323e-14
Identity = 44/123 (35.77%), Postives = 63/123 (51.22%), Query Frame = 2
Query:  317 FDASRPDHQEALRALWAATYPDRELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRAA------WE---------YPFAVAGVNITFMLMQMLDLEATK 640
            +D+  P H+E L  LW    P+  L   +S QW E+G+QG DP TDFRG G + L NL +FA+  +T  Q++L      + +      WE         Y FA+ G+NIT +   +L   A K
Sbjct:  127 YDSDNPQHEEMLLKLWELLKPNTPLESRVSKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATVAQQVLSDSVHPKCSKFSKIEWEKKKMDKAIGYSFAIVGINITDLAYNLLVSGALK 249          
BLAST of FC877962 vs. ExPASy Swiss-Prot
Match: ELMD1_HUMAN (ELMO domain-containing protein 1 OS=Homo sapiens GN=ELMOD1 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 3.323e-14
Identity = 47/131 (35.88%), Postives = 68/131 (51.91%), Query Frame = 2
Query:  317 FDASRPDHQEALRALWAATYPDRELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLL------------RKQGGK--RAAWE---------YPFAVAGVNITFMLMQMLDLEATK 640
            +D+  P H+E L  LW    P+  L   IS QW E+G+QG DP TDFRG G + L NL +FA+  +T+ Q++L            +++  K  +A WE         Y FA+ G+NIT +   +L   A K
Sbjct:  127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALK 257          
The following BLAST results are available for this feature:
BLAST of FC877962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ELMOA_DICDI7.385e-2228.17ELMO domain-containing protein A OS=Dictyostelium ... [more]
ELMOC_DICDI1.179e-1927.35ELMO domain-containing protein C OS=Dictyostelium ... [more]
ELMOB_DICDI2.459e-1733.63ELMO domain-containing protein B OS=Dictyostelium ... [more]
ELMD2_MOUSE2.081e-1631.91ELMO domain-containing protein 2 OS=Mus musculus G... [more]
ELMD2_HUMAN3.550e-1636.11ELMO domain-containing protein 2 OS=Homo sapiens G... [more]
ELMD1_PONAB5.126e-1537.40ELMO domain-containing protein 1 OS=Pongo abelii G... [more]
ELMD2_BOVIN6.695e-1534.26ELMO domain-containing protein 2 OS=Bos taurus GN=... [more]
ELMD1_BOVIN1.492e-1436.03ELMO domain-containing protein 1 OS=Bos taurus GN=... [more]
ELMD1_MOUSE3.323e-1435.77ELMO domain-containing protein 1 OS=Mus musculus G... [more]
ELMD1_HUMAN3.323e-1435.88ELMO domain-containing protein 1 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA18DF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877962 ID=FC877962; Name=FC877962; organism=Citrus clementina; type=EST; length=913bp
CTTGCTTCAGTTTCATTCCTGCCGAGTAACTGTTGATGTCATTGAGAAGA
TGAGAGTATTTAGGAGTCAGGGAGGCTGCGTGGCGATCCGTACACTCTCT
CCTTCGTCTTCAATCAACCGCTACTCTCACGCTCACGGCTCTGCTCCCGG
CCCCGCTGCTTCAGATGATGCTACTTGTGGGACGCCTACCTGGATTGGTA
AGGGCTTGACGTGTGTTTGTTTCAAGAGAAAGGGAACTTATGAGCGGATT
TGCATTAACTTGACTCCCCAACAGGAAGAAAGACTGAGAAGGTTGAAGCA
CCGAATGAAGGTTTACTTTGATGCCTCCAGGCCCGATCACCAGGAAGCTT
TGAGAGCATTGTGGGCCGCCACATACCCTGATCGGGAGCTCCATGGCTTA
ATATCTGATCAATGGAAAGAAATGGGATGGCAAGGAAAAGATCCATCTAC
TGATTTCAGAGGAGCAGGATTCATTTCTCTGGAGAACCTATTGTTCTTTG
CCAAGACATTTTCGACATCATTTCAGCGTTTACTAAGAAAGCAAGGAGGT
AAGCGTGCTGCCTGGGAGTATCCCTTTGCTGTTGCTGGTGTAAACATCAC
ATTCATGCTCATGCAAATGCTTGACCTTGAGGCTACAAAACCTAGGACAT
TTGTCAGATCAGTTTTCTTGCAGATGTTGTCAGGTAGGAGCCTCCATGAT
ATTGTCATGGTCAAGCATTGCTGAATCTACTGTCAATTTTACATTAAATA
AATTGGTCTGTTGTCATTTGCGACAGCTTTAGTTATTCTTAAACGTGTTG
TTTCAGACAATGAGTGGGCCTTTGATTTGCTTTATTGTGTGGCTTTTGTG
GTTATGGACAAGCAATGGCTTGAGAGAAATGCTACTTACATGGAGTTCAA
TGATGTTTTGAAA
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