FC877965
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSNA_ARATH (Presenilin-like protein At1g08700 OS=Arabidopsis thaliana GN=At1g08700 PE=2 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 9.664e-63 Identity = 119/182 (65.38%), Postives = 140/182 (76.92%), Query Frame = 1 Query: 58 SLSGASDP-FRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDEE 600 SLS SDP R+AANL+Y+E P DS+T KLEG++ NA+VFV+LIA VTF+LVLL+YYNFTNFLK+Y+RFSAFFVLGTMGG PVD+ TCF+LLFNFTI+G LS+F+GGIPI+LRQ YMV MGI++AAWFTKLPEWTTW PGGPLKLLVELAS+ DEE Sbjct: 33 SLSVTSDPQIRSAANLIYIENPSDSTTVKLEGSLANAIVFVVLIAAVTFILVLLFYYNFTNFLKHYMRFSAFFVLGTMGGAIFLSIIQHFSIPVDSITCFILLFNFTILGTLSVFAGGIPIVLRQCYMVVMGIVVAAWFTKLPEWTTWFILVALALYDLVAVLAPGGPLKLLVELASSRDEE 214
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSNB_ARATH (Presenilin-like protein At2g29900 OS=Arabidopsis thaliana GN=At2g29900 PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.007e-35 Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 1 Query: 64 SGASDPFRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDEE 600 S +S F + A Y E DSS K GA+LN++VFV I + TF+LVLL+Y FLK Y+ FSAF VLG +GG P+D+ T +LLFNF++VGV ++F IL+ Q Y+V +G+++A +FT LPEWTTW P GPL+LLVE+A + DE+ Sbjct: 44 SSSSASFSSIATAAYSESDSDSSWDKFVGALLNSVVFVAAITVATFVLVLLFYLRCVKFLKFYMGFSAFIVLGNLGGEILVLLIDRFRFPIDSITFLILLFNFSVVGVFAVFMSKFSILITQGYLVWIGVLVAYFFTLLPEWTTWVLLVALALYDIAAVLLPVGPLRLLVEMAISRDED 222
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSNA_DICDI (Presenilin-A OS=Dictyostelium discoideum GN=psenA PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17 Identity = 43/149 (28.86%), Postives = 82/149 (55.03%), Query Frame = 1 Query: 151 AVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 +V+N+L+F+ +I + T ++V+LY + L ++ ++ +LG GG +D T ++++NF++ G++ +F P LL Q Y++ + ++MA +F++LP+WTTW PGGPL++L+E A +E Sbjct: 227 SVVNSLIFLAVIILSTTIMVVLYKFKLMKALYAWLMGTSILLLGVFGGFLFLILLAYLNLGLDYVTFVIVVWNFSVGGIVCIFWYS-PKLLNQGYLISISVLMALFFSRLPDWTTWGILSIVSIYDIFAVLCPGGPLRILIETAQKRNE 374
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_XENLA (Presenilin-1 OS=Xenopus laevis GN=psen1 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.333e-16 Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = 1 Query: 85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 R L+Y +D+ + Q+ ++LNA + + +I ++T LLV+LY Y + ++ S+ +L VD T +L++NF +VG++ + G P+LL+QAY++ + +MA F K LPEWTTW P GPL++LVE A +E Sbjct: 74 RFDGQLIYTPFTEDTESVGQRALNSILNATIMISVIIVMTILLVVLYKYRCYKVIHGWLIISSLLLLFFFSYIYLGEVFKTYNVAVDYITLALLIWNFGVVGMICIHWKG-PLLLQQAYLIMISALMALVFIKYLPEWTTWLILAVISVYDLVAVLSPKGPLRMLVETAQERNE 246
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_MICMU (Presenilin-1 OS=Microcebus murinus GN=PSEN1 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16 Identity = 54/174 (31.03%), Postives = 86/174 (49.43%), Query Frame = 1 Query: 85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 R L+Y +D+ T Q+ +VLNA + + +I ++T LLV+LY Y + ++ S+ +L VD T +L++NF +VG++S+ G P+ L+QAY++ + +MA F K LPEWT W P GPL++LVE A +E Sbjct: 108 RKDGQLIYTPFTEDTETVGQRALHSVLNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 280
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_PONAB (Presenilin-1 OS=Pongo abelii GN=PSEN1 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.787e-16 Identity = 53/174 (30.46%), Postives = 86/174 (49.43%), Query Frame = 1 Query: 85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 R L+Y +D+ T Q+ ++LNA + + +I ++T LLV+LY Y + ++ S+ +L VD T +L++NF +VG++S+ G P+ L+QAY++ + +MA F K LPEWT W P GPL++LVE A +E Sbjct: 108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 280
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_MACFA (Presenilin-1 OS=Macaca fascicularis GN=PSEN1 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.787e-16 Identity = 53/174 (30.46%), Postives = 86/174 (49.43%), Query Frame = 1 Query: 85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 R L+Y +D+ T Q+ ++LNA + + +I ++T LLV+LY Y + ++ S+ +L VD T +L++NF +VG++S+ G P+ L+QAY++ + +MA F K LPEWT W P GPL++LVE A +E Sbjct: 108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFKNLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 280
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_HUMAN (Presenilin-1 OS=Homo sapiens GN=PSEN1 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.787e-16 Identity = 53/174 (30.46%), Postives = 86/174 (49.43%), Query Frame = 1 Query: 85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 R L+Y +D+ T Q+ ++LNA + + +I ++T LLV+LY Y + ++ S+ +L VD T +L++NF +VG++S+ G P+ L+QAY++ + +MA F K LPEWT W P GPL++LVE A +E Sbjct: 108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 280
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_DANRE (Presenilin-2 OS=Danio rerio GN=psen2 PE=2 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15 Identity = 52/174 (29.89%), Postives = 86/174 (49.43%), Query Frame = 1 Query: 85 RTAANLVY--LERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 ++ L+Y E +S Q+L +VLN LV + +I +T +LVLLY Y F+ ++ S+ +L +D T ++++NF +VG++ + G P+ L+QAY++ + +MA F K LPEW+ W P GPL++LVE A +E Sbjct: 113 KSGQRLIYTPFEEDPNSVGQRLLNSVLNTLVMISVIVFMTIILVLLYKYRCYKFIHGWLILSSLMLLFWFSFMYLGEVFKTYNVAMDYPTLLMIIWNFGVVGMICIHWKG-PLRLQQAYLIVISALMALIFIKYLPEWSAWVILGAISIYDLIAVLCPKGPLRMLVETAQERNE 285
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_MOUSE (Presenilin-1 OS=Mus musculus GN=Psen1 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15 Identity = 53/174 (30.46%), Postives = 86/174 (49.43%), Query Frame = 1 Query: 85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597 R L+Y +D+ T Q+ ++LNA + + +I I+T LLV+LY Y + ++ S+ +L VD T +L++NF +VG++++ G P+ L+QAY++ + +MA F K LPEWT W P GPL++LVE A +E Sbjct: 108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVIMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYVTVALLIWNFGVVGMIAIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 280 The following BLAST results are available for this feature:
BLAST of FC877965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877965 ID=FC877965; Name=FC877965; organism=Citrus clementina; type=EST; length=617bpback to top |