FC877966

Overview
NameFC877966
Unique NameFC877966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length816
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9012 contig Ccv1_Contig9012:1..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877966 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 6.339e-35
Identity = 89/231 (38.53%), Postives = 132/231 (57.14%), Query Frame = 2
Query:   95 HSKKKEMERSAYVSYPY----ENGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQTRRQHGADQHKENNGGSSFVNFYNGSLATSMTSSRGDEDQGPISEALKCQAXXXXXXXXXXXXXXXXXMRIEAQGKYLQAILQKAQKSLSVDSSVTGNVNAEAARDQLTTFNLAISNLMESMNEQDRKGNATEFNDMIKKGN 775
            H+KK      +Y +       ++G+++T DPKPRLRWT +LH+RFVDAV +LGGPDKATPK+++R+MG+KGLTLYHLKSHLQK+RLG+Q  +++G    KE +  S+     N + ++ M S   +E Q  +   L  Q                  +RIEAQGKY+Q+IL++A ++L+ ++       A AA       NL  S+L  ++       +   F D+   GN
Sbjct:    3 HAKKPSSMNGSYENRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQ----------LEVQRHLQLRIEAQGKYMQSILERACQTLAGENMAA--ATAAAAVGGGYKGNLGSSSLSAAVGPPPHPLSFPPFQDLNIYGN 221          
BLAST of FC877966 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.723e-14
Identity = 47/121 (38.84%), Postives = 65/121 (53.72%), Query Frame = 2
Query:  167 RDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYR------LG----------QQTRRQHGADQHKENN-----GGSSFVNFYNGSLATSMTSSRGDED 466
            R P PRLRWT +LH  FV AV  LGG  KATPK VL++M +KGLT+ H+KSHLQ YR      LG          ++ RRQ   + H  +N          + F++ +     +++  D+D
Sbjct:   20 RSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLLGKPEESSSPSSRRRRRQDNEEDHLHDNLPVHARNDCLLGFHSFNFREQTSATDNDDD 140          
The following BLAST results are available for this feature:
BLAST of FC877966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APL_ARATH6.339e-3538.53Myb family transcription factor APL OS=Arabidopsis... [more]
MYBF_ARATH4.723e-1438.84Putative Myb family transcription factor At1g14600... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO21RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877966 ID=FC877966; Name=FC877966; organism=Citrus clementina; type=EST; length=816bp
AAAAATTCTCACTTTTTAAAGTATTTCCAATCAATTAATATAGAGCTTAA
AACAGTTGAAAATAGCTTTGATCTTATTATTGTTTGTTGTTGTTCATTCG
AAGAAGAAAGAAATGGAAAGAAGTGCTTATGTGAGTTATCCTTACGAGAA
CGGAGTAATGATGACAAGGGACCCGAAGCCAAGGCTCAGATGGACGGCTG
ATCTTCACGATCGCTTTGTCGATGCCGTCACCAAACTCGGCGGCCCCGAT
AAAGCAACTCCAAAGTCGGTGTTGAGATTGATGGGATTAAAGGGCTTAAC
CTTGTATCATTTAAAGAGCCACCTACAGAAGTATAGACTGGGTCAACAGA
CACGGAGACAACACGGTGCGGATCAACACAAAGAGAATAATGGTGGGAGT
TCATTTGTAAATTTCTATAATGGTTCTCTGGCTACTAGTATGACATCATC
CAGAGGAGATGAGGATCAAGGCCCAATTTCAGAAGCACTCAAGTGTCAGG
CAGAAGTACAGCAGAGATTACAAGAGCAGCTTGAGGTGCAAGAGAGATTA
CAAATGAGAATAGAAGCACAGGGCAAATACTTGCAAGCTATATTACAGAA
AGCTCAGAAGAGCCTCTCGGTTGATAGCAGTGTGACTGGTAATGTTAATG
CAGAAGCTGCGAGAGATCAATTAACAACCTTCAATTTGGCAATATCGAAT
CTCATGGAGAGCATGAACGAGCAAGACAGGAAAGGGAACGCAACAGAGTT
TAATGACATGATAAAGAAGGGCAACGCCAATGGCTCGAGTTTTCGAGTTT
CAGGAGATTGCGGCGA
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