FC877969

Overview
NameFC877969
Unique NameFC877969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6137 contig Ccv1_Contig6137:1..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC877969 vs. ExPASy Swiss-Prot
Match: SDE3_ARATH (Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.405e-12
Identity = 41/172 (23.84%), Postives = 89/172 (51.74%), Query Frame = 3 
Query:  402 YKIPKDVEDLVKKDIVPDVLKKPLSPSTYKDYFAALLYAEDFYIEKWSGFQLFNVTLEVHKAAIYDKSLKNKNLKESDEKNDKLFVAFEIDSVPERRPFLLSRDFVHARRSGSNAKE--FQGILYRVVKSNVVLVEFEEDFYSLHHPKYRYDISFSFNRVCLKRAHQAIAAA 911
            Y+IPK++ ++++    PD L + L+   Y +Y+  LL  E+  +E                     + ++  +++    K   ++++ E+  + ERRP L+  DF+  R +  +  +  +QG ++R V+++ V ++F  +F+  H     Y++ F++NR+  +R +QA+ AA
Sbjct:  217 YEIPKEIREMIENKEFPDDLNEGLTARNYANYYKTLLIMEELQLE---------------------EDMRAYDMENVSMKRRGIYLSLEVPGLAERRPSLVHGDFIFVRHAYDDGTDHAYQGFVHR-VEADEVHMKFASEFHQRHTAGSVYNVRFTYNRINTRRLYQAVDAA 366
The following BLAST results are available for this feature:
BLAST of FC877969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SDE3_ARATH1.405e-1223.84Probable RNA helicase SDE3 OS=Arabidopsis thaliana... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA5AH10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA5AH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877969 ID=FC877969; Name=FC877969; organism=Citrus clementina; type=EST; length=924bp
CGGATGAAGATTTTCATGAAACTGAAACGGACTACTGGGAGACAATCTCT
CTACTTAGAACATCGAATCACAACTCTTCTGTCGGGAATTATAGTCATCA
CAACTCTTCTCTCAGGAATTCTAGTGAAACTCAAAGGGACTACTGGGAGA
CACTATCATTTGATTCTGAACAACATCAATTACGTGCTAAGCCACCGGCA
TCTCCACCACCCCGTAAATCCTCGCAATCTTTATCTGGTTCTACTTTGAC
GACGAAAGACGCAGCGCCTAAAGTTTTGAAGAAGCCATTGTCTCAGAAGG
CTCCTTCATCTTCTCAGCCTACCCTTTCACCATTCCCTTCTGATTCAACA
AATCAGCAGAAAAATGATAGCTATTTTTTGGTTGAGAAGGGCGCATCCAA
TTACAAGATTCCTAAGGATGTTGAAGATTTGGTTAAGAAAGACATTGTGC
CTGATGTTTTGAAGAAGCCATTGTCTCCGTCGACTTACAAAGACTACTTT
GCTGCTCTGCTGTACGCTGAGGATTTCTACATTGAGAAGTGGAGCGGTTT
TCAGTTATTCAATGTCACATTGGAGGTGCATAAAGCTGCAATATATGATA
AATCACTCAAGAACAAGAATCTGAAGGAAAGTGATGAGAAGAATGATAAA
CTCTTTGTAGCCTTTGAAATTGATTCTGTTCCTGAGAGACGACCATTTCT
ATTATCTAGAGATTTTGTCCACGCACGACGTTCGGGCAGCAACGCCAAGG
AGTTTCAAGGTATTCTTTACCGGGTGGTGAAGAGCAACGTAGTGTTGGTT
GAGTTTGAAGAAGATTTTTATTCACTGCATCATCCAAAGTACAGATACGA
TATTAGCTTCTCATTCAACCGAGTCTGTTTGAAACGAGCTCACCAAGCAA
TTGCAGCTGCATCACGTTCTTTAT
back to top