FC877975

Overview
NameFC877975
Unique NameFC877975
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9013 contig Ccv1_Contig9013:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC877975 vs. ExPASy Swiss-Prot
Match: RHBL4_TOXGO (Rhomboid-like protease 4 OS=Toxoplasma gondii GN=ROM4 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14
Identity = 34/108 (31.48%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:  458 PSASTLDQMGALRQTFLKEYHHTWRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRHW 781
            P+A  L  +G L   +++EY  T+RLFT  ++H G++H+++NL C + +   +E ++G +R  +++      G+L +A+    S  V +SGS++ LLGA++   + +W
Sbjct:  320 PNARVLRHLGGLETNYIREYSETFRLFTSMYMHGGWLHILINLSCQIQILWIIEPDWGFLRTTLLFFLGGISGNLLSAVADPCSITVGSSGSMYALLGALIPYCVEYW 427
[Close]
BLAST of FC877975 vs. ExPASy Swiss-Prot
Match: RHBL3_HUMAN (Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 2 
Query:  527 WRLFTCPWLHAGFIHLILNLGCIVLVGIHLEKEFGPVRIGIIYIFSAFVGSLAAALFVQNSPVVCASGSLFGLLGAMLSGLIRHWN 784
            WR  T  ++HAG  HL LN+   +LVG+ LE   G  RIG++Y+     GSLA ++    +PVV +SG ++ L+ A L+ ++ +W+
Sbjct:  212 WRYLTYIFMHAGIEHLGLNVVLQLLVGVPLEMVHGATRIGLVYVAGVVAGSLAVSVADMTAPVVGSSGGVYALVSAHLANIVMNWS 297
The following BLAST results are available for this feature:
BLAST of FC877975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RHBL4_TOXGO5.892e-1431.48Rhomboid-like protease 4 OS=Toxoplasma gondii GN=R... [more]
RHBL3_HUMAN1.604e-1138.37Rhomboid-related protein 3 OS=Homo sapiens GN=RHBD... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YO23RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YO23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877975 ID=FC877975; Name=FC877975; organism=Citrus clementina; type=EST; length=793bp
CAAAAGTTTCCCGCCAAATCCACCCGTCTCCAACAAATTCTGTTACGCTC
GCAACTAATCGCTACTTCAGGACTAAAAGCCCCTACTAAAATCAGTTAGC
ATTCACTATTCATTCTCAGGAAAACCAGCAATGGCAGACTCAGCATCGCA
ACTCCAAACTCAGATCGAAATCAAACAGTCCCATCAAGAAAAAGAACTCG
CAAATCTTCCGATCATTACTTTCCCGGAAACCCAAGGGCAAGAGTACCAC
AAAGCCAAAGCCCCATTCTTCAAGTCTCGCGGTCGTAAAAGAGGGACCGA
CACCTGGGTTATATCGGTCTTCGTCATTCTCCACGTCGTGGCCTTCGCCG
CCACCATGGCCGTCAACGATTGCTGGAGGAATTCTCACGGTAACTGCGCC
CTCAAAATGCTGGGGAGGCTGTCGTTTCAGCCGATCTCTGAGAATCCCCT
TCTCGGTCCTTCAGCCTCCACGCTTGATCAAATGGGTGCTCTTCGGCAGA
CATTCTTGAAAGAATATCACCATACTTGGCGTCTTTTCACATGTCCCTGG
TTGCATGCTGGATTCATCCACCTCATCCTCAACCTTGGCTGTATTGTCCT
TGTAGGAATTCACTTGGAAAAGGAATTTGGACCAGTGAGGATTGGTATAA
TCTATATATTCTCTGCTTTTGTTGGAAGCTTGGCTGCTGCACTCTTTGTC
CAAAATAGTCCAGTAGTTTGTGCCTCTGGTTCACTGTTTGGATTACTTGG
AGCTATGCTTTCTGGTCTTATCCGCCACTGGAACTTTTACACT
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