FC877976

Overview
NameFC877976
Unique NameFC877976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length892
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC877976_ssr515 microsatellite FC877976_ssr515:515..526. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4983 contig Ccv1_Contig4983:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877976 vs. ExPASy Swiss-Prot
Match: IQD32_ARATH (Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 3.723e-47
Identity = 139/344 (40.41%), Postives = 188/344 (54.65%), Query Frame = 3
Query:   45 MGRS--NSCFKIITC--GSDSAGNDDLDVSESKSSNDKRGWSFRKKSARHRVLSNSVVTETA-SSVKKENLETADVNFQTPSS------VKQSLESTDVSFQTP--------------SSAKKESLELTNVNFQPPNISNVPEKIPTI------------------------------QCIDEKPQLPTPVEPKTSET----IIETDAD---DSPLDESVVVVIQAAVRGILAQRELLKLKNVVKLQAAVRGHMVRRHAVGTLRCVQAIVKMQTLVRARYARLVKEPDWKAEKDTCNSVTSKGNLVTKPNATRTSIQNLLSNRFARQLMESTPKNKPINIKCDP 890
            MGRS  +SC ++I+C  G D++ + +    E+KSS DKRGWSFRKKS + R L  SVV+ET  +S  +E LE+A +   +P +       +QS    +   Q P               S  +E  EL +V  Q   I +  E  P I                              + +  + ++ + VEP+ SE+    I+  ++D   D  LDESV+VVIQAAVRG LA+RELL+ K V+KLQAAVRGH+VR  A+G+LRCVQAIVKMQ +VRAR+          + KD   S  S  +  ++PNA   + Q LL N+FA+ LMESTPK KPINIKCDP
Sbjct:    1 MGRSPASSCLRLISCSGGDDTSADPNSTALENKSSGDKRGWSFRKKSGKQRGLITSVVSETTPASRTRETLESALLKSPSPDNNNVSEKQQQSFSVDEKKSQLPVVTYVAEPVDEKKTQSVIEEKTELLSVEEQ---IDHRTEVSPVIVESKGTETEEDDLIGTELQGPSAADAAKIEEDVTSEVEMASKVEPEESESDDVIIVRKESDEKVDEKLDESVIVVIQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMGSLRCVQAIVKMQAMVRARH----------STKD--GSRVSATSDKSEPNA---AAQKLLENKFAKHLMESTPKTKPINIKCDP 326          
BLAST of FC877976 vs. ExPASy Swiss-Prot
Match: IQD31_ARATH (Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.877e-15
Identity = 63/208 (30.29%), Postives = 101/208 (48.56%), Query Frame = 3
Query:  279 VKQSLESTDVSFQTPSS--AKKESLELTNVNFQPPNISNVPEKIPTIQCIDEKPQLPTPVEPKTSETIIETDADDSPLDES-------VVVVIQAAVRGILAQRELLKLKNVVKLQAAVRGHMVRRHAVGTLRCVQAIVKMQTLVRARYARLVKEPDWKAEKDTCNSVTSKGNLVTKPNATRTSIQNLLSNRFARQLMESTPKNKPIN 875
            V   +E +DV    PS   A+  +++ +    +  N+   PE+I      D++ +LP   E K++++       D  L ++           +QAA RG LA+R    LK +++LQA +RGH+VRR AV TL  V  IV++Q   R R  R  K          C     +GN +  P      I+ L +N FA++L+ S+PK  P++
Sbjct:   37 VTSKVEESDVVSDLPSFEVAETNTVDRSGGMLETQNVG--PEEIS-----DDEIELP---EGKSTDSQNVAPVQDHSLSDAERIQREIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAFARGREIR--KSDIGVQVYRKCRLQLLQGNKLANPTDAYLGIKKLTANAFAQKLLASSPKVLPVH 232          
The following BLAST results are available for this feature:
BLAST of FC877976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IQD32_ARATH3.723e-4740.41Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQ... [more]
IQD31_ARATH2.877e-1530.29Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQ... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA44BD12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877976 ID=FC877976; Name=FC877976; organism=Citrus clementina; type=EST; length=892bp
TGCGCTAGGAGGACCAGATAAGGAGAACAAACTAACCAAACAAAATGGGA
AGATCAAATTCTTGTTTCAAAATTATCACCTGCGGTAGCGACTCAGCTGG
CAACGATGATCTTGATGTCTCCGAGAGCAAGAGCTCAAATGACAAACGTG
GGTGGAGTTTCCGGAAGAAATCTGCCCGGCATCGAGTGCTAAGCAACAGT
GTGGTAACAGAAACTGCTTCATCTGTAAAGAAAGAAAATCTGGAGACAGC
TGATGTTAACTTCCAAACCCCTTCATCTGTAAAGCAGAGTCTGGAGTCCA
CTGATGTTAGCTTCCAAACTCCTTCATCTGCAAAGAAGGAGAGTCTGGAG
TTGACTAATGTTAATTTTCAACCACCCAATATCTCCAATGTTCCAGAGAA
AATCCCCACCATACAGTGCATTGATGAGAAACCCCAGTTGCCAACTCCTG
TGGAACCGAAAACATCTGAGACCATTATTGAGACAGATGCAGATGATTCC
CCCCTAGATGAGTCTGTTGTTGTTGTCATCCAGGCAGCTGTCAGAGGGAT
CTTGGCTCAAAGAGAACTCTTAAAGCTTAAGAATGTGGTTAAGTTGCAAG
CTGCTGTACGAGGACACATGGTTCGGAGGCACGCTGTGGGAACCCTACGT
TGTGTTCAAGCCATTGTTAAGATGCAAACTCTTGTTCGTGCTCGCTATGC
TCGTCTTGTAAAGGAGCCAGATTGGAAGGCAGAGAAGGATACCTGCAATT
CTGTAACCTCGAAGGGAAACTTAGTAACTAAACCAAATGCAACTCGCACT
TCTATTCAGAATCTGCTTAGCAACAGGTTTGCTCGTCAGCTAATGGAGTC
AACACCGAAGAACAAGCCTATCAACATTAAGTGTGATCCTGC
back to top