FC878008

Overview
NameFC878008
Unique NameFC878008
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length825
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig593 contig Ccv1_Contig593:19..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_PARUW (Tyrosyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25) GN=tyrS PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.144e-62
Identity = 113/207 (54.59%), Postives = 154/207 (74.40%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSN----VVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            NV+D L  RG ++++TS+ +R L +   + +KVYCGFDPTA+SLHLGNL+ I+ L+WF R GH  VA++GGAT  +GDPSGK+ ER  LD   ++ N+ GI K    I   ++     +ILNN DW+K+F+F+ FL+ VG+  R+  M+AK+SVK RL SE+G+SFTEF YQ+LQGYDFL+LF+N GV V++GGSDQWG ITAGT+L
Sbjct:    3 NVMDVLRERGFIDAVTSEEIRQLTN---QPIKVYCGFDPTADSLHLGNLVAIMGLAWFQRFGHTPVAIVGGATGMIGDPSGKNAERQLLDEKKIQLNLKGISKNLEAILDFNHPTAPAIILNNLDWFKNFTFISFLRDVGKLFRLSPMLAKDSVKTRLNSEEGMSFTEFCYQILQGYDFLHLFENYGVTVELGGSDQWGNITAGTDL 206          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_BACFR (Tyrosyl-tRNA synthetase OS=Bacteroides fragilis GN=tyrS PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.030e-53
Identity = 106/210 (50.48%), Postives = 142/210 (67.62%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF-----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N V+ L  RG++  +       LA   ++ +  Y G DPTA+SLH+G+L G+++L  F RCGH+ +ALIGGAT  +GDPSGKS ER  LD +TL  N   I+K  +          +   ++NNYDW K+F+FLDF ++VG+   +  M+AKESVKKRL  E+  GLSFTEF+YQLLQGYDFL+L++ KG  +Q+GGSDQWG IT GTEL
Sbjct:    2 NFVEELRWRGMVHDMMPGTEELLA---KEQVTAYVGIDPTADSLHIGHLCGVMILRHFQRCGHKPLALIGGATGMIGDPSGKSAERNLLDEETLRHNQACIKKQLAKFLDFESDAPNRAELVNNYDWMKEFTFLDFAREVGKHITVNYMMAKESVKKRLNGEARDGLSFTEFTYQLLQGYDFLHLYETKGCKLQMGGSDQWGNITTGTEL 208          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_BACFN (Tyrosyl-tRNA synthetase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tyrS PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.030e-53
Identity = 106/210 (50.48%), Postives = 142/210 (67.62%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF-----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N V+ L  RG++  +       LA   ++ +  Y G DPTA+SLH+G+L G+++L  F RCGH+ +ALIGGAT  +GDPSGKS ER  LD +TL  N   I+K  +          +   ++NNYDW K+F+FLDF ++VG+   +  M+AKESVKKRL  E+  GLSFTEF+YQLLQGYDFL+L++ KG  +Q+GGSDQWG IT GTEL
Sbjct:    2 NFVEELRWRGMVHDMMPGTEELLA---KEQVTAYVGIDPTADSLHIGHLCGVMILRHFQRCGHKPLALIGGATGMIGDPSGKSAERNLLDEETLRHNQACIKKQLAKFLDFESDAPNRAELVNNYDWMKEFTFLDFAREVGKHITVNYMMAKESVKKRLNGEARDGLSFTEFTYQLLQGYDFLHLYETKGCKLQMGGSDQWGNITTGTEL 208          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_BACTN (Tyrosyl-tRNA synthetase OS=Bacteroides thetaiotaomicron GN=tyrS PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.482e-52
Identity = 105/210 (50.00%), Postives = 143/210 (68.10%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSNVV-----ILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N V+ L  RG+L+ I       L   N++ +  Y G DPTA+SLH+G+L G+++L    RCGH+ +ALIGGAT  +GDPSGKS ER  L+ +TL  N   I+K  +      + V     ++NNYDW K+FSFLDF+++VG+   +  M+AK+SVK+RL  E+  GLSFTEF+YQLLQGYDFL+L++ KG  +Q+GGSDQWG IT G EL
Sbjct:    2 NFVEELRWRGMLQDIMPGTEELL---NKEQVTAYLGIDPTADSLHIGHLCGVMILRHLQRCGHKPLALIGGATGMIGDPSGKSAERNLLNEETLRHNQACIKKQLAKFLDFESDVPNRAELVNNYDWMKEFSFLDFVREVGKHITVNYMMAKDSVKRRLNGEARDGLSFTEFTYQLLQGYDFLHLYETKGCKLQMGGSDQWGNITTGAEL 208          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_BACV8 (Tyrosyl-tRNA synthetase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tyrS PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.794e-51
Identity = 102/210 (48.57%), Postives = 142/210 (67.62%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIF-----GSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N V+ L  RG++ ++       LA   ++ +  Y G DPTA+SLH+G+L G+++L  F RCGH+ +AL+GGAT  +GDPSGKS ER  L  +TL  N+  I+K  +          +   ++NNYDW KDF+FLDF ++VG+   +  M+AK+SV+KRL  E+  GLSFTEF+YQLLQGYDFL+L++ KG  +Q+GGSDQWG IT G EL
Sbjct:    2 NFVEELTWRGMVHTMMPGTEELLA---KEQVTAYLGIDPTADSLHIGHLCGVMMLRHFQRCGHKPLALVGGATGMIGDPSGKSQERNLLTEETLRHNVACIKKQLAKFLDFESDAPNKAELVNNYDWMKDFTFLDFAREVGKHITVNYMMAKDSVQKRLNGEARDGLSFTEFTYQLLQGYDFLHLYETKGCKLQMGGSDQWGNITTGAEL 208          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_FLAPJ (Tyrosyl-tRNA synthetase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=tyrS PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.472e-51
Identity = 103/209 (49.28%), Postives = 144/209 (68.90%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTI--FGSSNV---VILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N+V+ L+ RGL   +       L    +++   Y GFDPTA+SLH+G+++ II+L      GH+ +ALIGGAT  +GDPSGKS ER  LD  TL KN+ GI+   S+   F ++N    +++NNYDW KDFSF+DF + +G+   +  M++K+SVKKRL +E +G+SFTEF+YQL+QGYDF YL++N    +Q+GGSDQWG IT GTEL
Sbjct:    3 NLVEELKWRGLFHDMMPGTEEQLT---KESTTAYIGFDPTADSLHIGSMVQIILLVHLKNFGHKPIALIGGATGMIGDPSGKSDERNLLDEATLNKNVAGIKAVLSSFLDFNTTNANAPILVNNYDWMKDFSFIDFARDIGKRITVNYMMSKDSVKKRLGAEGEGMSFTEFTYQLIQGYDFQYLYKNHNCLLQMGGSDQWGNITTGTEL 208          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_RHOBA (Tyrosyl-tRNA synthetase OS=Rhodopirellula baltica GN=tyrS PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.104e-50
Identity = 102/207 (49.28%), Postives = 139/207 (67.15%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDN-LRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIR---KTFSTIFGSSNVVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            ++++ L  RGLL   T +N +  L +S  +T  +Y GFDPTA SLH+G ++ +++L  F R GH  +AL+GGAT  +GDPSGKS ER  L  D L+KN+ G+    + F    G +   +LNN+DW KD+S+L+FL+ VG+   +G M+ KESV+ RLESE GLS+TEFSY LLQ YDF+ L Q     +Q GGSDQWG ITAG +L
Sbjct:   15 SLIEDLRWRGLLNQTTDENGIAELLNSGPQT--IYIGFDPTATSLHVGGMMQLMMLRRFQRAGHNPIALVGGATGMIGDPSGKSEERNLLSADQLQKNVDGVAAQMRHFLDFEGDNAAKLLNNFDWMKDYSYLEFLRDVGKNFPVGAMMGKESVRSRLESEAGLSYTEFSYMLLQAYDFVNLAQTHDCRIQAGGSDQWGNITAGIDL 219          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_PORGI (Tyrosyl-tRNA synthetase OS=Porphyromonas gingivalis GN=tyrS PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.479e-50
Identity = 104/210 (49.52%), Postives = 138/210 (65.71%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSN-----VVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N V+ L  RG++  I       L   N+     Y G DPTA+SLH+G+L+G+++L  F R GH+ +ALIGGAT  +GDPS KS ER  LD  TL  N   I++  +      +       ++NNYDW KD+SFL F++ +G+   +  M+AK+SVKKRL  ES  GLSFTEFSYQLLQGYD+LYL++N+G  +Q+GGSDQWG IT GTEL
Sbjct:    2 NFVEELRWRGMIHDIMPGTEEHL---NKGMTSAYVGIDPTADSLHIGHLVGVMMLRHFQRAGHRPIALIGGATGMIGDPSMKSAERVLLDEATLRHNQDCIKQQLAKFLDFDSDAPNAAKLVNNYDWMKDYSFLGFIRDIGKHITVNYMMAKDSVKKRLSAESSTGLSFTEFSYQLLQGYDYLYLYRNEGCRLQMGGSDQWGNITTGTEL 208          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_PORG3 (Tyrosyl-tRNA synthetase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tyrS PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.479e-50
Identity = 104/210 (49.52%), Postives = 138/210 (65.71%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLKVYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSN-----VVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRL--ESEQGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N V+ L  RG++  I       L   N+     Y G DPTA+SLH+G+L+G+++L  F R GH+ +ALIGGAT  +GDPS KS ER  LD  TL  N   I++  +      +       ++NNYDW KD+SFL F++ +G+   +  M+AK+SVKKRL  ES  GLSFTEFSYQLLQGYD+LYL++N+G  +Q+GGSDQWG IT GTEL
Sbjct:    2 NFVEELRWRGMIHDIMPGTEEHL---NKGMTSAYVGIDPTADSLHIGHLVGVMMLRHFQRAGHRPIALIGGATGMIGDPSMKSAERVLLDEATLRHNQDCIKQQLAKFLDFDSDAPNAAKLVNNYDWMKDYSFLGFIRDIGKHITVNYMMAKDSVKKRLSAESSTGLSFTEFSYQLLQGYDYLYLYRNEGCRLQMGGSDQWGNITTGTEL 208          
BLAST of FC878008 vs. ExPASy Swiss-Prot
Match: SYY_FLAJ1 (Tyrosyl-tRNA synthetase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tyrS PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.155e-50
Identity = 102/213 (47.89%), Postives = 144/213 (67.61%), Query Frame = 1
Query:  217 NVVDTLERRGLLESITSDNLRSLASSNEKTLK----VYCGFDPTAESLHLGNLLGIIVLSWFLRCGHQAVALIGGATARVGDPSGKSIERPELDIDTLEKNILGIRKTFSTIFGSSN-----VVILNNYDWWKDFSFLDFLKQVGRFARIGTMIAKESVKKRLESE-QGLSFTEFSYQLLQGYDFLYLFQNKGVNVQIGGSDQWGYITAGTEL 825
            N+V+ L+ RGL          S+  + E+ LK     Y GFDPTA+SLH+G+++ II+L      GHQ +AL+GGAT  +GDPSGKS ER  L+ +TL KN+ GI+   S     ++      +++NNYDW K+FSF+DF ++VG+   +  M+AK+SVKKR+  E +G+SFTEF+YQL+QGYDF +L++N    +Q+GGSDQWG IT GTEL
Sbjct:    3 NLVEELKWRGLYHD-------SMPGTEEQLLKEVTSAYIGFDPTADSLHIGSMVQIILLVHLKNFGHQPIALVGGATGMIGDPSGKSDERNLLNEETLAKNVAGIKSVLSRFLDFNSKEQNAPIMVNNYDWMKEFSFIDFAREVGKRITVNYMMAKDSVKKRINGEGEGMSFTEFTYQLIQGYDFYHLYKNNNCLLQMGGSDQWGNITTGTEL 208          
The following BLAST results are available for this feature:
BLAST of FC878008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SYY_PARUW2.144e-6254.59Tyrosyl-tRNA synthetase OS=Protochlamydia amoeboph... [more]
SYY_BACFR9.030e-5350.48Tyrosyl-tRNA synthetase OS=Bacteroides fragilis GN... [more]
SYY_BACFN9.030e-5350.48Tyrosyl-tRNA synthetase OS=Bacteroides fragilis (s... [more]
SYY_BACTN4.482e-5250.00Tyrosyl-tRNA synthetase OS=Bacteroides thetaiotaom... [more]
SYY_BACV83.794e-5148.57Tyrosyl-tRNA synthetase OS=Bacteroides vulgatus (s... [more]
SYY_FLAPJ6.472e-5149.28Tyrosyl-tRNA synthetase OS=Flavobacterium psychrop... [more]
SYY_RHOBA1.104e-5049.28Tyrosyl-tRNA synthetase OS=Rhodopirellula baltica ... [more]
SYY_PORGI5.479e-5049.52Tyrosyl-tRNA synthetase OS=Porphyromonas gingivali... [more]
SYY_PORG35.479e-5049.52Tyrosyl-tRNA synthetase OS=Porphyromonas gingivali... [more]
SYY_FLAJ17.155e-5047.89Tyrosyl-tRNA synthetase OS=Flavobacterium johnsoni... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE04RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878008 ID=FC878008; Name=FC878008; organism=Citrus clementina; type=EST; length=825bp
CAAACGCAAATGGCAGCCGCAGCCGCTGCCGCTGCGTCGAGAACTCTCCT
CTGCTCCCACCAAAAACTCATAACCTCATCCATTTACAGCACCACCACCT
CAAAAATCACCCACCCATTTCTTCACCGCATTAAAAACTCTGCTTTCTTC
TCTTCGATCAGCTGCGTTCAACAACTCCAATCCGACCCACAGACACAAAC
CCACGGCCGTCACCCGAATGTCGTCGACACTCTCGAGAGAAGAGGCTTGC
TTGAATCTATCACCAGTGACAATCTCCGCTCACTCGCTTCATCCAATGAG
AAAACCCTCAAAGTCTACTGCGGGTTTGACCCAACTGCCGAGTCCTTACA
CTTGGGTAACCTCTTGGGTATCATTGTTCTGTCTTGGTTCCTCCGTTGCG
GCCACCAAGCTGTCGCCTTGATCGGTGGCGCCACCGCTCGTGTTGGTGAC
CCATCTGGGAAATCAATAGAAAGGCCTGAACTCGACATTGATACGTTAGA
AAAGAACATTCTTGGAATTCGTAAGACTTTTTCAACCATTTTTGGTTCTA
GTAATGTTGTTATTTTGAATAATTATGATTGGTGGAAAGATTTTAGCTTC
CTGGATTTTCTTAAACAAGTGGGTCGATTTGCGAGAATTGGGACTATGAT
TGCTAAGGAGAGTGTGAAGAAGAGGTTGGAATCTGAGCAAGGATTGAGCT
TTACTGAGTTTAGTTATCAGTTGTTGCAGGGATATGATTTTCTTTACTTG
TTTCAAAATAAGGGTGTTAATGTTCAGATTGGGGGGAGTGATCAGTGGGG
GTACATTACTGCTGGGACTGAGCTT
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