FC878011

Overview
NameFC878011
Unique NameFC878011
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length788
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878011 vs. ExPASy Swiss-Prot
Match: NLTP_RABIT (Non-specific lipid-transfer protein OS=Oryctolagus cuniculus GN=SCP2 PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.173e-69
Identity = 132/231 (57.14%), Postives = 166/231 (71.86%), Query Frame = 2
Query:   68 VYVLGVGMTKFIKP--RGKVDYPELGFEAGVKAMLDAHINYDDVDQGVACYCYGDSTCGQR-VFYQFGMTGIPVYNVNNNCSTGSTGLYMGRNMIAHGAADCVLVVGFEKMFPGSLQTFFQDRANPTGTSSLMMKETRGITKAPGAAQMFGNAGREHMEKYGSELKDFAEIGRINHAHSKNNPYSQFQDEYTLEQVMNAPMIHEPLTKLQCCPTSDGAAATVLVSXEFLDK 751
            V+V+GVGMTKF+KP      DYP++  EAG KA+ DA I Y  V+Q    Y YGDSTCGQR V++  G+TGIP+ NVNNNCSTGST L+MGR +I  G A+CVL +GFEKM  GSL   F DR NP      ++    G++  P A QMFG+AG+EHMEKYG++++ FA+IG  NH HS NNPYSQFQ EY+L++VM++  I + LT LQCCPTSDGAAA +L S EF+ K
Sbjct:   14 VFVVGVGMTKFVKPGTEDARDYPDMAKEAGQKALADAQIPYSAVEQACIGYVYGDSTCGQRAVYHSLGLTGIPIINVNNNCSTGSTALFMGRQLIQGGMAECVLALGFEKMERGSLGAKFPDRTNPMDKHLDVLINKYGLSAHPVAPQMFGSAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQKEYSLDEVMSSRPIFDFLTVLQCCPTSDGAAAAILASEEFVKK 244          
BLAST of FC878011 vs. ExPASy Swiss-Prot
Match: NLTP_BOVIN (Non-specific lipid-transfer protein OS=Bos taurus GN=SCP2 PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 8.258e-69
Identity = 135/241 (56.02%), Postives = 168/241 (69.71%), Query Frame = 2
Query:   68 VYVLGVGMTKFIKPRGKV-DYPELGFEAGVKAMLDAHINYDDVDQGVACYCYGDSTCGQR-VFYQFGMTGIPVYNVNNNCSTGSTGLYMGRNMIAHGAADCVLVVGFEKMFPGSLQTFFQDRANPTGTSSLMMKETRGITKAPGAAQMFGNAGREHMEKYGSELKDFAEIGRINHAHSKNNPYSQFQDEYTLEQVMNAPMIHEPLTKLQCCPTSDGAAATVLVSXEFLDKRPELKDQAILI 784
            V+V+GVGMTKF KP  +  DYP+L  EAG KA+ DA I Y  V+Q    Y YGDST GQR +++  G+TGIP+ NVNNNCSTGST L+M R +I  G ADCVL +GFEKM  G +    QD+ANP      +M    G++ +P A QMFGNAG+EHMEKYG+ L+ FA+IG  NH HS NNPYSQFQ EY+L++VM +  I + LT LQCCPTSDGAAA +L S  F+ K   LK +A+ I
Sbjct:   14 VFVVGVGMTKFTKPGVENRDYPDLAKEAGQKALADAQIPYSAVEQACIGYVYGDSTSGQRAIYHSLGLTGIPIINVNNNCSTGSTALFMARQLIQGGLADCVLALGFEKMVKGPIAVNIQDKANPIDKHIEVMVNKYGLSPSPVAPQMFGNAGKEHMEKYGTTLEHFAKIGWKNHKHSVNNPYSQFQKEYSLDEVMTSRKIFDFLTVLQCCPTSDGAAAAILASEAFVQKH-NLKPKAVEI 253          
BLAST of FC878011 vs. ExPASy Swiss-Prot
Match: NLTP_HUMAN (Non-specific lipid-transfer protein OS=Homo sapiens GN=SCP2 PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 1.079e-68
Identity = 130/231 (56.28%), Postives = 163/231 (70.56%), Query Frame = 2
Query:   68 VYVLGVGMTKFIKP--RGKVDYPELGFEAGVKAMLDAHINYDDVDQGVACYCYGDSTCGQR-VFYQFGMTGIPVYNVNNNCSTGSTGLYMGRNMIAHGAADCVLVVGFEKMFPGSLQTFFQDRANPTGTSSLMMKETRGITKAPGAAQMFGNAGREHMEKYGSELKDFAEIGRINHAHSKNNPYSQFQDEYTLEQVMNAPMIHEPLTKLQCCPTSDGAAATVLVSXEFLDK 751
            V+V+GVGMTKF+KP      DYP+L  EAG KA+ DA I Y  VDQ    Y +GDSTCGQR +++  GMTGIP+ NVNNNC+TGST L+M R +I  G A+CVL +GFEKM  GSL   F DR  PT     ++    G++  P A QMFG AG+EHMEKYG++++ FA+IG  NH HS NNPYSQFQDEY+L++VM +  + + LT LQCCPTSDGAAA +L S  F+ K
Sbjct:   14 VFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQACVGYVFGDSTCGQRAIYHSLGMTGIPIINVNNNCATGSTALFMARQLIQGGVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEAFVQK 244          
BLAST of FC878011 vs. ExPASy Swiss-Prot
Match: NLTP_CHICK (Non-specific lipid-transfer protein (Fragment) OS=Gallus gallus GN=SCP2 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.840e-68
Identity = 132/241 (54.77%), Postives = 167/241 (69.29%), Query Frame = 2
Query:   68 VYVLGVGMTKFIKP-RGKVDYPELGFEAGVKAMLDAHINYDDVDQGVACYCYGDSTCGQRVFYQ-FGMTGIPVYNVNNNCSTGSTGLYMGRNMIAHGAADCVLVVGFEKMFPGSLQTFFQDRANPTGTSSLMMKETRGITKAPGAAQMFGNAGREHMEKYGSELKDFAEIGRINHAHSKNNPYSQFQDEYTLEQVMNAPMIHEPLTKLQCCPTSDGAAATVLVSXEFLDKRPELKDQAILI 784
            V+V+GVGMTKF KP    VDYP+L  EAG KA+ DA I Y  V+Q    Y YGDSTCGQR  Y   G+TGIP+ NVNNNC+TGST L+M R ++  G ADCVL +GFE+M  GSL + F DR NP      +M    G+  AP   QMF NAG+EHMEKYG+  + FA+I   NH+HS NNPYSQFQ +YTL++V+ +  + + LT LQCCPTS+GAAA +L S +F+ KR +L+ QA+ I
Sbjct:   18 VFVVGVGMTKFAKPSENSVDYPDLAKEAGQKALADAGIPYSAVEQACVGYVYGDSTCGQRAIYHGLGLTGIPIINVNNNCATGSTALFMSRQLVEGGLADCVLALGFERMAKGSLASGFSDRTNPMDKHLEIMINKYGLASAPITPQMFANAGKEHMEKYGTNPEYFAKIAWKNHSHSTNNPYSQFQKKYTLDEVLQSRKVFDFLTVLQCCPTSNGAAAAILASEDFV-KRHKLQPQAVEI 257          
BLAST of FC878011 vs. ExPASy Swiss-Prot
Match: NLTP_RAT (Non-specific lipid-transfer protein OS=Rattus norvegicus GN=Scp2 PE=1 SV=3)

HSP 1 Score: 254.988 bits (650), Expect = 3.470e-67
Identity = 124/231 (53.68%), Postives = 167/231 (72.29%), Query Frame = 2
Query:   68 VYVLGVGMTKFIKPRGKV--DYPELGFEAGVKAMLDAHINYDDVDQGVACYCYGDSTCGQR-VFYQFGMTGIPVYNVNNNCSTGSTGLYMGRNMIAHGAADCVLVVGFEKMFPGSLQTFFQDRANPTGTSSLMMKETRGITKAPGAAQMFGNAGREHMEKYGSELKDFAEIGRINHAHSKNNPYSQFQDEYTLEQVMNAPMIHEPLTKLQCCPTSDGAAATVLVSXEFLDK 751
            V+V+GVGMTKF+KP G+   DYP+L  EAG KA+ D  I Y  V+Q    Y YG+STCGQR +++  G+TGIP+ NVNNNCSTGST L+M + ++  G A+CVL +GFEKM  GSL T + DR+NP      ++    G++  P A Q+FG+AG+EHME YG++++ FA+IG  NH HS NNPYSQFQDEY+L+++M +  + + LT LQCCPTSDGAAA ++ S EF+ K
Sbjct:   14 VFVVGVGMTKFMKPGGENSRDYPDLAKEAGQKALADRQIPYSAVEQACVGYVYGESTCGQRAIYHSLGLTGIPIINVNNNCSTGSTALFMAQQLVQGGLANCVLALGFEKMEKGSLGTKYSDRSNPLEKHIDVLINKYGMSACPFAPQLFGSAGKEHMETYGTKVEHFAKIGWKNHKHSVNNPYSQFQDEYSLDEIMKSRPVFDFLTVLQCCPTSDGAAAAIVSSEEFVQK 244          
BLAST of FC878011 vs. ExPASy Swiss-Prot
Match: NLTP_MOUSE (Non-specific lipid-transfer protein OS=Mus musculus GN=Scp2 PE=1 SV=3)

HSP 1 Score: 252.677 bits (644), Expect = 1.722e-66
Identity = 128/242 (52.89%), Postives = 169/242 (69.83%), Query Frame = 2
Query:   35 TTAIMVGKKQPVYVLGVGMTKFIKPRGKV--DYPELGFEAGVKAMLDAHINYDDVDQGVACYCYGDSTCGQR-VFYQFGMTGIPVYNVNNNCSTGSTGLYMGRNMIAHGAADCVLVVGFEKMFPGSLQTFFQDRANPTGTSSLMMKETRGITKAPGAAQMFGNAGREHMEKYGSELKDFAEIGRINHAHSKNNPYSQFQDEYTLEQVMNAPMIHEPLTKLQCCPTSDGAAATVLVSXEFLDK 751
            + A+   + + V+V+GVGMTKF+KP G+   DYP++  EAG KA+ DA I Y  V+Q    Y YGDST GQR +++  G+TGIP+ NVNNNCSTGST L+M   +I  G A+CVL +GFEKM  GS+ T F DR  PT     ++ +  G++  P   QMFG AG+EHMEKYG++++ FA+IG  NH HS NN YSQFQDEY+LE+VM +  + + LT LQCCPTSDGAAA +L S EF+ +
Sbjct:    3 SVALKSPRLRRVFVVGVGMTKFMKPGGENSRDYPDMAKEAGQKALEDAQIPYSAVEQACVGYVYGDSTSGQRAIYHSLGLTGIPIINVNNNCSTGSTALFMAHQLIQGGLANCVLALGFEKMERGSIGTKFSDRTTPTDKHIEVLIDKYGLSAHPITPQMFGYAGKEHMEKYGTKVEHFAKIGWKNHKHSVNNTYSQFQDEYSLEEVMKSKPVFDFLTILQCCPTSDGAAAAILSSEEFVQQ 244          
BLAST of FC878011 vs. ExPASy Swiss-Prot
Match: Y793_METTH (Uncharacterized protein MTH_793 OS=Methanobacterium thermoautotrophicum GN=MTH_793 PE=4 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.374e-21
Identity = 73/229 (31.88%), Postives = 110/229 (48.03%), Query Frame = 2
Query:   68 VYVLGVGMTKFIKPRGKVDYPELGFEAGVKAMLDAHINYDDVDQGVACYCYGDSTCGQRVFYQF---------GMTGIPVYNVNNNCSTGSTGLYMGRNMIAHGAADCVLVVGFEKMFPGSLQTFFQDRANPTGTSSLMMKETRGITKAPGAAQMFGNAGREHMEKYGSELKDFAEIGRINHAHSKNNPYSQFQDEYTLEQVMNAPMIHEPLTKLQCCPTSDGAAATVL 727
            V V+GV  TKF +    V + ++  EAG+ A+ DA +   D+D   A Y  G+ + G  +  +          G+T IP   V   C++G   L  G   +A G  D V+  G EKM          D  +PT   +    +     +      ++    R HM +YG+  +  A +  INH ++ NNP +QF  + T+EQVMN+ M+ +PL  L C P SDGAAA +L
Sbjct:    4 VAVIGVSQTKFGE-LWDVSFRDMITEAGLGAIEDAGVEGADLD---AMYV-GNMSAGLFIKQEHISSLIADHAGLTPIPSTRVEAACASGGLALRSGIMAVASGYHDIVIAAGVEKM---------TDVVDPTPAIATASDQEWEAQQGVTFPSLYAMMARRHMYEYGTTREQLAMVSVINHENASNNPRAQFPMKVTVEQVMNSTMVADPLRLLDCSPISDGAAAVIL 218          
BLAST of FC878011 vs. ExPASy Swiss-Prot
Match: Y1549_METJA (Uncharacterized protein MJ1549 OS=Methanocaldococcus jannaschii GN=MJ1549 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.666e-18
Identity = 70/229 (30.57%), Postives = 104/229 (45.41%), Query Frame = 2
Query:   68 VYVLGVGMTKFIKPRGKVDYPELGFEAGVKAMLDAHINYDDVDQGV-----ACYCYGDSTCGQRVFYQFGMTGIPVYNVNNNCSTGSTGLYMGRNMIAHGAADCVLVVGFEKMFPGSLQTFFQDRANPTGTSSLMMKETRGITKAPGAAQMFGNAGREHMEKYGSELKDFAEIGRINHAHSKNNPYSQFQDEYTLEQVMNAPMIHEPLTKLQCCPTSDGAAATVLVSXE 739
            V ++G G TKF +   +  +  L  EAGVKA+  A I+  D+D+       A    G       +    G+  IP   V   C++GS  L      +A GA+D VLV G EKM          D  + T   S    +            ++    + +M +YG  L++ +    I H ++  N Y+QF  + TLEQV+N+  + EPL  L C P SDGAAA ++   E
Sbjct:    4 VAIIGYGQTKFGELWER-SFRSLIVEAGVKAVEAAGIDGKDIDEMYVGNMSAGLFVGQEHIASLIAEHAGLNPIPSTRVEAACASGSLALRQAVLNVASGASDVVLVGGVEKM---------TDVVDATSAISSASDQEWEALFGATFPSLYAMMAQRYMYEYGLTLEELSMWSVIMHENASKNRYAQFPFKVTLEQVLNSSPVAEPLRLLHCSPVSDGAAALIVCEAE 222          
The following BLAST results are available for this feature:
BLAST of FC878011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NLTP_RABIT2.173e-6957.14Non-specific lipid-transfer protein OS=Oryctolagus... [more]
NLTP_BOVIN8.258e-6956.02Non-specific lipid-transfer protein OS=Bos taurus ... [more]
NLTP_HUMAN1.079e-6856.28Non-specific lipid-transfer protein OS=Homo sapien... [more]
NLTP_CHICK1.840e-6854.77Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP_RAT3.470e-6753.68Non-specific lipid-transfer protein OS=Rattus norv... [more]
NLTP_MOUSE1.722e-6652.89Non-specific lipid-transfer protein OS=Mus musculu... [more]
Y793_METTH8.374e-2131.88Uncharacterized protein MTH_793 OS=Methanobacteriu... [more]
Y1549_METJA8.666e-1830.57Uncharacterized protein MJ1549 OS=Methanocaldococc... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE05RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878011 ID=FC878011; Name=FC878011; organism=Citrus clementina; type=EST; length=788bp
CTAGAGCTTCTACACGCCTTGCCCTTCCTACCTCACAACCGCCATCATGG
TCGGCAAGAAGCAGCCCGTCTACGTCCTCGGCGTGGGCATGACCAAGTTC
ATCAAACCTCGTGGCAAGGTGGACTATCCCGAACTCGGGTTTGAAGCAGG
TGTCAAAGCCATGCTCGACGCGCACATCAACTACGACGACGTCGACCAAG
GTGTCGCATGCTACTGCTATGGCGACTCAACTTGCGGTCAGCGCGTCTTC
TACCAGTTTGGCATGACTGGCATTCCAGTATACAATGTCAACAACAACTG
CTCGACTGGCTCAACAGGCCTGTACATGGGACGAAACATGATTGCGCATG
GAGCGGCCGACTGCGTCTTGGTCGTGGGCTTTGAGAAGATGTTCCCAGGG
TCGCTGCAGACCTTCTTCCAAGATCGCGCAAACCCGACAGGCACGTCAAG
TTTAATGATGAAAGAGACGAGAGGCATTACCAAGGCCCCTGGTGCCGCCC
AGATGTTCGGAAACGCTGGACGGGAGCACATGGAGAAATACGGCTCTGAA
CTCAAAGACTTTGCAGAGATCGGTCGCATCAACCACGCGCACTCCAAGAA
CAACCCCTACTCGCAATTCCAAGACGAATACACCCTCGAACAAGTCATGA
ATGCACCCATGATTCACGAACCCCTCACAAAGCTTCAATGCTGCCCGACC
TCGGATGGAGCTGCTGCCACAGTCCTTGTCTCGCANGAGTTTCTCGACAA
GCGTCCCGAGCTCAAGGACCAGGCTATCCTAATTGCTG
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