FC878023

Overview
NameFC878023
Unique NameFC878023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7881 contig Ccv1_Contig7881:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878023 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.324e-20
Identity = 52/135 (38.52%), Postives = 76/135 (56.30%), Query Frame = 3
Query:  462 DIPPNTKLPLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADL-SKCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGG 863
            D P     P+II+FHGG ++  SA + I+ + C +       +++SV+YR APEHR P A+DD   +++WV  Q    P++R   D  ++ FL G SSGG IA+H  +RA D        VK+ G +L    FGG
Sbjct:  106 DAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQ----PFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAAD------EGVKVCGNILLNAMFGG 230          
BLAST of FC878023 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.403e-19
Identity = 65/195 (33.33%), Postives = 103/195 (52.82%), Query Frame = 3
Query:  327 DGSLTRH-NKF--PTVPPSASITDQLALSKDVPLNPQNKTFLRLFKPKDI---PPNTKL---------PLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGG 863
            DG+  RH  +F    VP +A+  + +  S DV ++ Q     R+++P D    P  T L         P+I++FHGG +   SA++ I+   C +L     A+++SV+YR APE+R P A+DD    ++WV   +    WLR   D   + FL G SSGG I ++  +RA++      S + ++G +L  P FGG
Sbjct:   38 DGTFNRHLAEFLDRKVPANANPVNGV-FSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS----WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVE------SRIDVLGNILLNPMFGG 221          
BLAST of FC878023 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.470e-18
Identity = 51/142 (35.92%), Postives = 80/142 (56.34%), Query Frame = 3
Query:  441 LRLFKPKDIPPNTKLPLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGG 863
            L L KP  +     +P++I+FHGG +   SA++ I+   C +L      +++SVDYR +PEHR P A+DD   ++ WV+ +     WL+   D +   +L G SSGG IA++  +RA +        VK++G +L  P FGG
Sbjct:   94 LELTKP--LSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV----WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATN------EGVKVLGNILLHPMFGG 223          
BLAST of FC878023 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.116e-16
Identity = 52/147 (35.37%), Postives = 80/147 (54.42%), Query Frame = 3
Query:  426 QNKTFLRLFKPKDIPPNTKLPLIIYFHGGGYILFSADAFIFHNSCCQLAAFIPALILSVDYRLAPEHRLPAAFDDAMESIQWVRDQALGDPWLRDYADLS-KCFLMGSSSGGGIAYHAGLRALDLDADHLSPVKIVGLVLNQPFFGG 863
            Q  + L L KP D      +P+I++FHGG +   SA++ I+   C +L      +++SV+YR APE+  P A+DD   ++ WV  ++    WL+   D     FL G SSGG IA++  LRA +      S + ++G +L  P FGG
Sbjct:   90 QPPSILDLEKPVD---GDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS----WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGE------SGIDVLGNILLNPMFGG 223          
The following BLAST results are available for this feature:
BLAST of FC878023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GID1_ORYSJ6.324e-2038.52Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L3_ARATH2.403e-1933.33Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH3.470e-1835.92Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH1.116e-1635.37Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA8CB03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA8CB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878023 ID=FC878023; Name=FC878023; organism=Citrus clementina; type=EST; length=866bp
ACTTACTTCCCTGTCTGAGAAGAGTCAAGAAAAACTGGCTCATTTATGGC
TTTCGTTCATACTCCACAATCAATTTATTATGTAATGTTGTTAATAGTTA
TGAAAAAAGGCGCACCAACCAACTAAAATGGATAGCCCTTTAATTGCTCC
ACCTTCTTTTCTTGACCACAAAAAAGCCCTAAGCTTTCCCTTCCCGTATA
AATAAAAAGTCGAACACTTGGTTTCAATTGTGCTAAATAAAAAGTAACAG
AGTGGTGGCAATGGCAGAAGAACAAATACAATGTTCCGTAGACCCTTTTG
AGTTACTCAAAATCTCCCTCAACTCGGACGGCTCACTCACGAGACACAAC
AAATTCCCCACTGTTCCGCCATCGGCATCGATAACCGACCAGCTCGCCCT
CTCCAAAGATGTCCCACTCAACCCCCAAAACAAAACTTTCCTTCGCTTAT
TTAAACCCAAGGATATTCCCCCCAACACAAAGCTCCCTCTTATTATATAC
TTCCATGGCGGCGGCTACATTTTGTTCAGTGCTGACGCTTTCATTTTTCA
CAACTCGTGCTGCCAACTGGCGGCTTTTATCCCCGCTTTAATCCTGTCGG
TTGATTACCGTCTCGCCCCCGAACACCGCCTTCCTGCAGCCTTTGATGAC
GCCATGGAATCCATCCAGTGGGTCCGCGACCAGGCTCTTGGTGACCCGTG
GCTGAGAGATTACGCCGATCTATCCAAGTGTTTTCTGATGGGCTCCAGCT
CTGGCGGCGGCATCGCTTACCATGCCGGGTTACGTGCATTGGACTTGGAT
GCTGATCATCTTTCGCCGGTGAAGATCGTAGGGCTCGTGCTCAATCAGCC
ATTTTTCGGTGGGGTC
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