FC878025

Overview
NameFC878025
Unique NameFC878025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length801
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14124 contig Ccv1_Contig14124:166..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.688e-64
Identity = 131/229 (57.21%), Postives = 155/229 (67.69%), Query Frame = 3
Query:  114 NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            +F  + IE V++A+  D A  Y +A+  Y N L+Y    LKYEKNPK K+ I  KFTEYL RAE+++  L+      A    +A +       K           + +  KLR  L+SAI+ EKPNVKW DVAGLE AK+AL+EAVILPVKFP  F G R+P    LLYGPPGTGKSYLAKAVATEA+STFFS+SSSDLVSKWMGESEKLV  LF MAREN PSIIFID
Sbjct:    5 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLESEEANAAKKSPSAGSGSNGGNKKISQEEGEDNGGE-DNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFID 232          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.291e-64
Identity = 133/231 (57.58%), Postives = 163/231 (70.56%), Query Frame = 3
Query:  123 EQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVL---DDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-DSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            ++AI+   +A QED AGNY +A  LY +A++YF   +KYE +  K K++I  K TEYL RAE+++  L   +     P   G  A A       K          +DPE+ KL+  L  AI+ E+PNVKW+DVAGLE AK+AL+EAVILP+KFP  FTGKR PWR  LL+GPPGTGKSYLAKAVATEA +STFFSISSSDLVSKW+GESEKLV +LFQ+AREN PSIIFID
Sbjct:    9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKREKKPQKPVKEGQPAPADE-----KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFID 234          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 8.216e-64
Identity = 132/231 (57.14%), Postives = 163/231 (70.56%), Query Frame = 3
Query:  123 EQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVL---DDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-DSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            ++AI+   +A QED AGNY +A  LY +A++YF   +KYE +  K K++I  K TEYL RAE+++  L   +     P   G  + A       K          +DPE+ KL+  L  AI+ E+PNVKW+DVAGLE AK+AL+EAVILP+KFP  FTGKR PWR  LL+GPPGTGKSYLAKAVATEA +STFFSISSSDLVSKW+GESEKLV +LFQ+AREN PSIIFID
Sbjct:    9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE-----KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFID 234          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.391e-63
Identity = 131/231 (56.71%), Postives = 163/231 (70.56%), Query Frame = 3
Query:  123 EQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVL---DDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-DSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            ++AI+   +A QED AGNY +A  LY +A++YF   +KYE +  K K++I  + TEYL RAE+++  L   +     P   G  + A       K          +DPE+ KL+  L  AI+ E+PNVKW+DVAGLE AK+AL+EAVILP+KFP  FTGKR PWR  LL+GPPGTGKSYLAKAVATEA +STFFSISSSDLVSKW+GESEKLV +LFQ+AREN PSIIFID
Sbjct:    9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAQCTEYLDRAEKLKEYLKNKEKKAQKPVKEGQPSPADE-----KGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFID 234          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 6.956e-63
Identity = 130/228 (57.02%), Postives = 159/228 (69.74%), Query Frame = 3
Query:  123 EQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-DSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            ++AI+   +A QED AGNY +A  LY +A++YF   +KYE +  K K++I  K TEYL RAE+++  L      P                K          +DPE+ KL+  L  AI+ E+PNVKW+DVAGLE AK+AL+EAVILP+KFP  FTGKR PWR  LL+GPPGTGKSYLAKAVATEA +STFFSISSSDLVSKW+GESEKLV +LFQ+AREN PSIIFID
Sbjct:    9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQK--PVKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFID 234          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.888e-62
Identity = 126/230 (54.78%), Postives = 152/230 (66.09%), Query Frame = 3
Query:  126 QAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDD-----GGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            +AI  VK A+  DNA  Y  A+  Y +AL+YF   LKYEKN K KE I  K  EYL RAE+++  L +            NG+   +  P                D +  KLR+ L SAI+ EKPNV+W+D+AGLE+AK+AL+E V+LP+K PQ F+  R+PW   LLYGPPGTGKSYLAKAVATEA STFFSISSSDLVSKWMGESE+LV  LF+MARE  PSIIFID
Sbjct:    9 KAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYEKNEKSKEIIRSKVIEYLDRAEKLKVYLQEKNNQISSKSRVSNGNVEGSNSPTANEAL----------DSDAKKLRSALTSAILVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRKPWSGILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMGESERLVRQLFEMAREQKPSIIFID 228          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.888e-62
Identity = 123/230 (53.48%), Postives = 155/230 (67.39%), Query Frame = 3
Query:  114 NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDG-GPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            NF ++AI+ V+QA ++DNA NYA+A  LY+ +LE+F T LKYEK+ + K  I  K  EYL+RAE+++  LD      P   G     +                  DPE  K    L+S+I+  KPNVKW+DVAGL  AK+ L+EAVI P+KFPQ FTG R+PW+  LLYGPPGTGKSYLAKAVATE  STFFSIS SD+V+KW+G+SEKLV  LF+MARE   S+IFID
Sbjct:    5 NFLQKAIQIVQQATEQDNAKNYAEAHRLYIQSLEWFTTALKYEKSERSKATIKAKTLEYLQRAEQLKEYLDKSKNKKPVAVGGNKSNSAGSANGAGKSAKEDDEDMDPEDKKRNDSLSSSIVTTKPNVKWDDVAGLYQAKEYLKEAVIFPIKFPQMFTGNRKPWKGILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQLFEMAREKNNSVIFID 234          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.401e-60
Identity = 123/234 (52.56%), Postives = 166/234 (70.94%), Query Frame = 3
Query:  105 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNP-KIKEAITQKFTEYLRRAEEIRAVLDDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-DSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            M ++  ++AI+ V +A +ED A NY +A  LY +A+EYF   +KYE +  K KE+I  K  +YL RAE+++  L +       +G   V    + + +          ++PE+ KL+  L  A++ EKPN++WNDVAGLE AK+AL+EAVILP+KFP  FTGKR PWR  LL+GPPGTGKSYLAKAVATEA +STFFS+SSSDL+SKW+GESEKLV +LF++AR++ PSIIFID
Sbjct:    1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCMQYLDRAEKLKDYLRN----KEKHGKKPVK---ENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFID 227          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.401e-60
Identity = 123/234 (52.56%), Postives = 166/234 (70.94%), Query Frame = 3
Query:  105 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNP-KIKEAITQKFTEYLRRAEEIRAVLDDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-DSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            M ++  ++AI+ V +A +ED A NY +A  LY +A+EYF   +KYE +  K KE+I  K  +YL RAE+++  L +       +G   V    + + +          ++PE+ KL+  L  A++ EKPN++WNDVAGLE AK+AL+EAVILP+KFP  FTGKR PWR  LL+GPPGTGKSYLAKAVATEA +STFFS+SSSDL+SKW+GESEKLV +LF++AR++ PSIIFID
Sbjct:    1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCMQYLDRAEKLKDYLRN----KEKHGKKPVK---ENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFID 227          
BLAST of FC878025 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.401e-60
Identity = 123/234 (52.56%), Postives = 165/234 (70.51%), Query Frame = 3
Query:  105 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNP-KIKEAITQKFTEYLRRAEEIRAVLDDGGPGPAHNGDAAVATRPKTKPKXXXXXXXXXXEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-DSTFFSISSSDLVSKWMGESEKLVSSLFQMARENAPSIIFID 800
            M ++  ++AI+ V +A +ED A NY +A  LY +A+EYF   +KYE +  K KE+I  K  +YL RAE+++  L         +G   V    + + +          ++PE+ KL+  L  A++ EKPN++WNDVAGLE AK+AL+EAVILP+KFP  FTGKR PWR  LL+GPPGTGKSYLAKAVATEA +STFFS+SSSDL+SKW+GESEKLV +LF++AR++ PSIIFID
Sbjct:    1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDRAEKLKDYLRS----KEKHGKKPVK---ENQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSIIFID 227          
The following BLAST results are available for this feature:
BLAST of FC878025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 355
Match NameE-valueIdentityDescription
VPS4_YEAST3.688e-6457.21Vacuolar protein sorting-associated protein 4 OS=S... [more]
VPS4B_BOVIN6.291e-6457.58Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_HUMAN8.216e-6457.14Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_PONAB2.391e-6356.71Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_MOUSE6.956e-6357.02Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4_SCHPO5.888e-6254.78Suppressor protein of bem1/bed5 double mutants OS=... [more]
VPS4_DICDI5.888e-6253.48Vacuolar protein sorting-associated protein 4 OS=D... [more]
VPS4A_RAT9.401e-6052.56Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE9.401e-6052.56Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN9.401e-6052.56Vacuolar protein sorting-associated protein 4A OS=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE08RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878025 ID=FC878025; Name=FC878025; organism=Citrus clementina; type=EST; length=801bp
CTCAAATTCGAAATCGAAATCTTTCAATTCACCCAAAAATCAAAATTAGT
AATTTCACATGCGATCCGATCATAAACCCTAACCAATAAATTTATAATTT
GAAGATGTACAGCAACTTCAAGGAACAGGCAATCGAGTACGTGAAACAAG
CCGTGCAAGAAGACAATGCTGGAAATTACGCAAAAGCCTTCCCTCTTTAC
ATGAACGCCTTGGAGTATTTCAAAACCCACTTGAAGTACGAGAAGAATCC
CAAGATTAAGGAGGCGATCACTCAGAAATTCACCGAGTATTTGCGCCGGG
CCGAGGAGATCCGTGCCGTTCTGGATGACGGCGGGCCCGGCCCCGCTCAC
AACGGGGACGCTGCGGTGGCGACCCGGCCTAAGACGAAGCCGAAGGATGG
TGGTGATGGTGGCGGCGGTGATGGGGAGGATCCGGAGCAGGCGAAGCTGA
GGGCTGGATTGAATTCGGCGATTATTAGGGAGAAGCCTAATGTTAAGTGG
AATGACGTGGCGGGTTTAGAAAGCGCTAAGCAAGCTTTGCAGGAGGCTGT
GATTTTGCCGGTTAAGTTTCCCCAGTTTTTCACCGGTAAGAGACAACCGT
GGAGAGCATTTCTATTGTATGGACCACCTGGAACTGGAAAGTCATACCTG
GCCAAGGCTGTTGCAACTGAAGCCGACTCTACATTTTTCAGTATTTCTTC
ATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTTGTCTCAA
GCCTTTTCCAGATGGCTCGTGAAAATGCTCCTTCCATTATTTTTATTGAT
G
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