FC878039

Overview
NameFC878039
Unique NameFC878039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878039_ssr152 microsatellite FC878039_ssr152:152..166. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10486 contig Ccv1_Contig10486:1..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP6_ARATH (Tubby-like F-box protein 6 OS=Arabidopsis thaliana GN=TULP6 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.686e-63
Identity = 114/178 (64.04%), Postives = 145/178 (81.46%), Query Frame = 1
Query:  373 RRGRSYIAPEGXXXXXKII----VEQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSP---GDMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            RRGRS+IAPEG      +     + QS W ++PPELL DIIQRIE+ Q+ WP RRDVVACASVCKSWR +TKE+++ PE  GL++FP+SL+QPGPRDAPIQC+I+RER TG YRLYLGLSP   GD SKLLL+A+++R+AT  +F++SL G+DFSR+S+ Y+GKLRSNFLG KFT+Y+
Sbjct:   41 RRGRSHIAPEGSSVSSSLSTNEGLNQSIWVDLPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKEVVKVPELSGLITFPISLRQPGPRDAPIQCFIKRERATGIYRLYLGLSPALSGDKSKLLLSAKRVRRATGAEFVVSLSGNDFSRSSSNYIGKLRSNFLGTKFTVYE 218          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP5_ORYSJ (Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.093e-58
Identity = 103/154 (66.88%), Postives = 132/154 (85.71%), Query Frame = 1
Query:  433 EQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSP---GDMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            +Q +WAN+PPELL D+IQR+EAS+ +WPARR VVACA+VC+SWR VTKE+++T E+CG ++FP+SLKQPGPR+ P+QC++RR+R T TY LYLGLSP   G+  KLLLAARKIR+AT T F+ISLV +DFS +S+TYVGKL+ NFLG KFTI+D
Sbjct:   64 QQGRWANLPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEECGRITFPISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRATRTSFVISLVSNDFSLSSSTYVGKLKPNFLGTKFTIFD 217          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP2_ARATH (Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.570e-58
Identity = 111/169 (65.68%), Postives = 133/169 (78.70%), Query Frame = 1
Query:  385 SYIAPEGXXXXXKIIVEQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPGDM--SKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            S+IAP+        I  QS WA++PPELLHDII R+E S+T+WPAR  VV+CASVCKSWR +T EI+R PEQCG L+FP+SLKQPGPRD+PIQC+I+R R T TY LY GL P +    KLLLAAR+IR+AT TDF+ISL   +FSR+S+TYVGKLRS FLG KFTIYD
Sbjct:   29 SHIAPDQTTPPLDNI-PQSPWASLPPELLHDIIWRVEESETAWPARAAVVSCASVCKSWRGITMEIVRIPEQCGKLTFPISLKQPGPRDSPIQCFIKRNRATATYILYYGLMPSETENDKLLLAARRIRRATCTDFIISLSAKNFSRSSSTYVGKLRSGFLGTKFTIYD 196          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.898e-53
Identity = 108/214 (50.47%), Postives = 140/214 (65.42%), Query Frame = 1
Query:  268 MALKNIVKEMRDXXXXXXXXXXXXXXXXXXKHNMRRR------GRSYIAPEGXXXXXKIIVEQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSP--GDMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            M+ +++++EMRD                  +H++R R      G   +A  G      +  +QS WA +PPELL +++ RIE S+  WP+RRDVVACA VC+SWR +TKEI+R PE  G L+FP+SLKQPGPRD  ++C+IRR R T TY LY+GL+    D  K LLAARK RK T TD+LISL   D S+ SNTY+GKLRSNFLG KFT+YD
Sbjct:    1 MSFRSLIQEMRDEFGSIS------------RHSLRSRSHRGGGGAPRVAAVGPAEAAAM--QQSCWAQLPPELLREVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPISLKQPGPRDGTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISLDMSDMSKGSNTYIGKLRSNFLGTKFTVYD 200          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.227e-51
Identity = 98/209 (46.89%), Postives = 143/209 (68.42%), Query Frame = 1
Query:  268 MALKNIVKEMRDXXXXXXXXXXXXXXXXXXKHNMRRRGRSYIAPEGXXXXXKIIVEQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSP---GDMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            M+ ++IV+++RD                        RG+S            +I+++S+WA++PPELL D+I+R+EAS+++WP+R+DVV+CA+VCK+WR + KEI+ +PE CG L+FP+SLKQPGPRD  IQC+I+R++   TY LYL LS     D  K LL+A++ RK T T+++IS+  D+ SR+S+TY+GKLRSNFLG KF IYD
Sbjct:    1 MSFRSIVRDVRDSFGSLSRRSFEVTLAGLSGLTGHHRGKSQSTVH-ELCDADLIIQESRWASLPPELLRDVIRRLEASESTWPSRKDVVSCAAVCKAWREMCKEIVLSPEFCGKLTFPLSLKQPGPRDGMIQCFIKRDKSKSTYHLYLCLSTAVLADSGKFLLSAKRHRKTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYD 208          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.227e-51
Identity = 98/209 (46.89%), Postives = 141/209 (67.46%), Query Frame = 1
Query:  268 MALKNIVKEMRDXXXXXXXXXXXXXXXXXXKHNMRRRGRSYIAPEGXXXXXKIIVEQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG---DMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            M+ ++IV+++RD                  K   + RG      +       + ++++ WAN+PPELL D+I+R+E S++ WPARR VVACASVC+SWR + KEI+++PE  G ++FPVSLKQPGPRDA +QC+I+R++   TY LYL LSP    +  K LL+A++IR+ T T+++IS+  D  SR+SNTY+GK+RSNFLG KF IYD
Sbjct:    1 MSFRSIVRDVRDSIGSLSRRSFDFKLSSLNKEGGKSRGS---VQDSHEEQLVVTIQETPWANLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHADTISRSSNTYIGKIRSNFLGTKFIIYD 206          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP12_ORYSJ (Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.098e-50
Identity = 96/209 (45.93%), Postives = 144/209 (68.90%), Query Frame = 1
Query:  268 MALKNIVKEMRDXXXXXXXXXXXXXXXXXXKHNMRRRGRSYIAPEGXXXXXKIIVEQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPGDMS---KLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            M+ ++IV+++RD                    +   RG+S +          ++V+QS+W  +PPELL D+++R+E  +++WP+R+DVVACA+VC++WR + K+I+++PE CG L+FPVSLKQPGPRD  IQC+I+R++   TY LYL LSP  +S   K LLAA++ R+ATST+++IS+   + SR+SN YVGK+RSNFLG KF +YD
Sbjct:    1 MSFRSIVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKS-LGSLSELRDRPVVVDQSRWVGLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPVSLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVLSENGKFLLAAKRNRRATSTEYIISVDSKNISRSSNGYVGKMRSNFLGTKFVVYD 208          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP10_ARATH (Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.740e-50
Identity = 91/157 (57.96%), Postives = 127/157 (80.89%), Query Frame = 1
Query:  424 IIVEQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG---DMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            +IV+ S+WAN+PPELL D+I+R+E S+++WPAR+ VVACASVC+SWRA+ +EI+  PE CG L+FPVSLKQPGPRDA IQC+I+R++   T+ L+L LSP    +  K LL+A++ R+ T T+++IS+  D+ SR+SN+Y+GKLRSNFLG KF +YD
Sbjct:   52 VIVQTSRWANLPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPVSLKQPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIISMDADNISRSSNSYLGKLRSNFLGTKFLVYD 208          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP11_ORYSJ (Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.041e-49
Identity = 94/175 (53.71%), Postives = 125/175 (71.43%), Query Frame = 1
Query:  367 MRRRGRSYIAPEGXXXXXKIIVEQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG--DMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            +RR   +   P        +++ +S W  +PPELL +++ R+E S+  WP RRDVVACA VC+SWR + +EI+RTPE  G L+FP+SLKQPGPRDAP++C+I R R T TY LY+GL+    D  K LLAARK R+ T T++LISL  +D S+ +++YVGKLRSNFLG KFTIYD
Sbjct:   29 VRRVAAAAEEPPDESSAAALVMRESCWTQLPPELLREVLARVEESEGWWPRRRDVVACAGVCRSWRGIVREIVRTPEASGNLTFPISLKQPGPRDAPMKCFIVRNRTTQTYYLYIGLTDALTDDGKFLLAARKCRRTTCTEYLISLDMNDISKRTDSYVGKLRSNFLGTKFTIYD 203          
BLAST of FC878039 vs. ExPASy Swiss-Prot
Match: TLP7_ORYSJ (Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.319e-49
Identity = 92/175 (52.57%), Postives = 127/175 (72.57%), Query Frame = 1
Query:  370 RRRGRSYIAPEGXXXXXKIIVEQSQWANMPPELLHDIIQRIEASQTSWPARRDVVACASVCKSWRAVTKEIIRTPEQCGLLSFPVSLKQPGPRDAPIQCYIRRERPTGTYRLYLGLSPG---DMSKLLLAARKIRKATSTDFLISLVGDDFSRNSNTYVGKLRSNFLGNKFTIYD 885
            R RG+S I P        ++ +QS+WA +PPELL D+++R+E   ++WP+R+DVVACASVC +WR + K+I+R PE CG L+FPVSLKQPGPRD  IQC+I+R++   TY LYL LS     +  K LL+A++ R+ T TD++IS+   + SR+S+ Y+GKLRSNFLG KF IYD
Sbjct:   32 RHRGKS-IGPSSELDDTPVVAQQSKWAGLPPELLRDVMKRLEEDDSNWPSRKDVVACASVCTTWRDMCKDIVRNPEFCGKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYHLYLCLSSAVLDETGKFLLSAKRSRRTTHTDYIISMDSKNISRSSSGYIGKLRSNFLGTKFIIYD 205          
The following BLAST results are available for this feature:
BLAST of FC878039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
TLP6_ARATH3.686e-6364.04Tubby-like F-box protein 6 OS=Arabidopsis thaliana... [more]
TLP5_ORYSJ2.093e-5866.88Tubby-like F-box protein 5 OS=Oryza sativa subsp. ... [more]
TLP2_ARATH3.570e-5865.68Tubby-like F-box protein 2 OS=Arabidopsis thaliana... [more]
TLP6_ORYSJ5.898e-5350.47Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]
TLP8_ORYSJ4.227e-5146.89Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]
TLP1_ARATH4.227e-5146.89Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]
TLP12_ORYSJ2.098e-5045.93Tubby-like F-box protein 12 OS=Oryza sativa subsp.... [more]
TLP10_ARATH2.740e-5057.96Tubby-like F-box protein 10 OS=Arabidopsis thalian... [more]
TLP11_ORYSJ1.041e-4953.71Tubby-like F-box protein 11 OS=Oryza sativa subsp.... [more]
TLP7_ORYSJ2.319e-4952.57Tubby-like F-box protein 7 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA80CB04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878039 ID=FC878039; Name=FC878039; organism=Citrus clementina; type=EST; length=887bp
ATACAGCCAATTAATTTTAACGGACGAAACGAGACGAAAAAGAGAGGTCA
AAATTTTAAAAAAGGAAAATTCGTTTAAATAAGATGAGAAATCAGGATCC
GAGAAAAGCTTTTTGAGTGGCTCGTGGCAGTTTGCTGGGCAGAGCAGCCT
CTCAGGTCAGGTCAGGGCAGGGTAAGTGGTGGTGACTGCGGTGACGGGGA
GAGAGAGGTATGCGAAGGAGACGACGACCTGAAACGCCTTTTTGTGAAAA
TTGCTAGTTGATTGAAGATGGCGTTGAAGAACATTGTTAAGGAAATGCGA
GATGGTATTGGTAACATATCAAGAAGAGGTTCAGAAAGAAGAGGCTCGGA
GAATGGGAAGCATAATATGCGACGCAGAGGGCGTTCTTATATTGCTCCTG
AAGGTTCTTCATCGTCATCCAAAATAATAGTTGAGCAGAGTCAGTGGGCA
AACATGCCCCCTGAATTGCTGCATGATATTATTCAGCGCATAGAAGCTAG
CCAGACCTCTTGGCCTGCCAGGAGGGATGTTGTTGCTTGTGCTTCTGTTT
GCAAGTCTTGGAGGGCTGTTACAAAGGAGATAATTAGGACTCCTGAGCAA
TGCGGGTTGCTTTCTTTTCCCGTTTCATTGAAGCAGCCGGGTCCAAGAGA
TGCTCCAATTCAATGCTATATTAGAAGGGAAAGGCCGACTGGCACATACA
GACTTTATCTTGGTCTCAGCCCAGGTGATATGAGTAAGTTACTGTTGGCT
GCAAGGAAGATCAGGAAGGCAACAAGCACTGATTTCTTGATATCCTTAGT
TGGAGATGATTTCTCTCGAAACAGCAATACTTACGTTGGAAAACTAAGGT
CTAATTTCCTTGGGAACAAGTTCACAATTTATGACAG
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