FC878095

Overview
NameFC878095
Unique NameFC878095
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length768
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4196 contig Ccv1_Contig4196:411..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: HNRPR_HUMAN (Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.034e-33
Identity = 70/206 (33.98%), Postives = 127/206 (61.65%), Query Frame = 3
Query:  156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 767
            P  G+EV++G IP D  +D+L    +  G + ++R+M    SG+ +GYAF+TF  KE A +A++  +S E++ GK +    + A +RLF+G++P+N  ++++ +  +K+  G++ + L   P +  +NRGF F+EY +H  A  +R+++ + K K+  N  TV WADP    +    ++VK L+V+NL   +T++ L++ F+  GK
Sbjct:  161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGK 366          
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: HNRPQ_HUMAN (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.046e-32
Identity = 70/206 (33.98%), Postives = 126/206 (61.17%), Query Frame = 3
Query:  156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 767
            P  G+E+++G IP D  +D+L    +  G + ++R+M    +G  +GYAFVTF TKE A +A++  N+ E++ GK I    + A +RLF+G++P++  ++ + +  +K+  G+  + L   P +  +NRGF F+EY +H  A  +R+++ + K K+  N  TV WADP  + +    ++VK L+V+NL   +T++ L++ F+  GK
Sbjct:  158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGK 363          
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: HNRPQ_RAT (Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.673e-32
Identity = 70/206 (33.98%), Postives = 126/206 (61.17%), Query Frame = 3
Query:  156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 767
            P  G+E+++G IP D  +D+L    +  G + ++R+M    +G  +GYAFVTF TKE A +A++  N+ E++ GK I    + A +RLF+G++P++  ++ + +  +K+  G+  + L   P +  +NRGF F+EY +H  A  +R+++ + K K+  N  TV WADP  + +    ++VK L+V+NL   +T++ L++ F+  GK
Sbjct:   68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGK 273          
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: HNRPQ_MOUSE (Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.673e-32
Identity = 70/206 (33.98%), Postives = 126/206 (61.17%), Query Frame = 3
Query:  156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 767
            P  G+E+++G IP D  +D+L    +  G + ++R+M    +G  +GYAFVTF TKE A +A++  N+ E++ GK I    + A +RLF+G++P++  ++ + +  +K+  G+  + L   P +  +NRGF F+EY +H  A  +R+++ + K K+  N  TV WADP  + +    ++VK L+V+NL   +T++ L++ F+  GK
Sbjct:  158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGK 363          
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: RBM46_MOUSE (Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.162e-29
Identity = 73/202 (36.14%), Postives = 116/202 (57.43%), Query Frame = 3
Query:  156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFA 755
            PP G EV++G IP D  +D+L    +  G++ E R+M  + SGE +GYAFV + TKE A  AI  LN+ E++ GK I    +    RLFIG +P+   ++++   + K+  GV+ + +     +  +NRGFAF+EY +H  A  +R+K+    F+L  +   V WADP +  +     +VK LYV+NL    T++ +K  F+
Sbjct:   57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFS 257          
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: RBM46_MACFA (Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 8.047e-29
Identity = 73/201 (36.32%), Postives = 115/201 (57.21%), Query Frame = 3
Query:  156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELF 752
            PP G EV++G IP D  +D+L    +  G++ E R+M  + SGE +GYAFV + TKE A  AI  LN+ E++ GK I    +    RLFIG +P+   ++++   + K+  GV+ + +     +  +NRGFAF+EY +H  A  +R+K+    F+L  +   V WADP +  +     +VK LYV+NL    T++ +K  F
Sbjct:   57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256          
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: RBM46_HUMAN (Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.047e-29
Identity = 73/201 (36.32%), Postives = 115/201 (57.21%), Query Frame = 3
Query:  156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELF 752
            PP G EV++G IP D  +D+L    +  G++ E R+M  + SGE +GYAFV + TKE A  AI  LN+ E++ GK I    +    RLFIG +P+   ++++   + K+  GV+ + +     +  +NRGFAF+EY +H  A  +R+K+    F+L  +   V WADP +  +     +VK LYV+NL    T++ +K  F
Sbjct:   57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256          
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: RBM46_DANRE (Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.341e-28
Identity = 69/202 (34.16%), Postives = 121/202 (59.90%), Query Frame = 3
Query:  156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFA 755
            PP G EV++G IP D  +D+L    +  G + E R+M  + SGE +GYAFV + T+E A +AI+ L++ E++ GK I    +    RLFIG++P++  ++++++ + K+  GV+ + +     +  +NRGFAF+EY +H  A  +R+K+    F+L  +   V WA+P +  +     +V+ LYV+NL    T++ L+  F+
Sbjct:   41 PPRGREVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMM-EFSGENRGYAFVMYTTREKAQRAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETMQRVRVLYVRNLMLSTTEETLRSEFS 241          
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: A1CF_HUMAN (APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.058e-28
Identity = 66/203 (32.51%), Postives = 117/203 (57.64%), Query Frame = 3
Query:  150 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELF 752
            A P  G E+++G +P D  +D+L   C+ IG++ E+R+M   + G  +GYAFVTF  K  A  AI++LN+ E++ G+ +   A+    RLF+G +P+    +++   + K+  GV+ + +     +  +NRGFAF+EY +H  A  +R+K+   + +L  +   V WA+P    +    S VK LYV+NL    +++ +++ F
Sbjct:   50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEF 251          
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: A1CF_RAT (APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.994e-28
Identity = 64/201 (31.84%), Postives = 117/201 (58.21%), Query Frame = 3
Query:  156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELF 752
            P  G E+++G +P D  +D+L   C+ IG++ E+R+M   + G  +GYAFVTF  K+ A  AI++LN+ E++ G+ +   A+    RLF+G +P+    +++   + K+  GV+ + +     +  +NRGFAF+EY +H  A  +R+++   + +L  +   V WA+P    +    S VK LYV+NL    +++ +++ F
Sbjct:   52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEF 251          
The following BLAST results are available for this feature:
BLAST of FC878095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
HNRPR_HUMAN7.034e-3333.98Heterogeneous nuclear ribonucleoprotein R OS=Homo ... [more]
HNRPQ_HUMAN2.046e-3233.98Heterogeneous nuclear ribonucleoprotein Q OS=Homo ... [more]
HNRPQ_RAT2.673e-3233.98Heterogeneous nuclear ribonucleoprotein Q OS=Rattu... [more]
HNRPQ_MOUSE2.673e-3233.98Heterogeneous nuclear ribonucleoprotein Q OS=Mus m... [more]
RBM46_MOUSE6.162e-2936.14Probable RNA-binding protein 46 OS=Mus musculus GN... [more]
RBM46_MACFA8.047e-2936.32Probable RNA-binding protein 46 OS=Macaca fascicul... [more]
RBM46_HUMAN8.047e-2936.32Probable RNA-binding protein 46 OS=Homo sapiens GN... [more]
RBM46_DANRE2.341e-2834.16Probable RNA-binding protein 46 OS=Danio rerio GN=... [more]
A1CF_HUMAN3.058e-2832.51APOBEC1 complementation factor OS=Homo sapiens GN=... [more]
A1CF_RAT3.994e-2831.84APOBEC1 complementation factor OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA30BA03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30BA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878095 ID=FC878095; Name=FC878095; organism=Citrus clementina; type=EST; length=768bp
AAGAAGTGGAAGAAGAGGTGGAAGAGGAGGAAGAAACTGAGGACGTTGTT
GATGGAATTGATGCACAGAAGCCCTATGATGGTGATGAGGAGATGAAAGT
CGCCGAGTCAGACAAGGACGACGAGAAAAAGAAGCATGCTGAACTTCTTG
CACTTCCTCCGCATGGGTCAGAGGTGTATCTTGGTGGCATTCCTCATGAT
GCTTCTGATGATGACCTGAGGCACTTTTGCAAATCTATAGGAGAAGTCAC
AGAGGTTCGGATAATGAAGGGTAAAGATTCAGGTGAGGCGAAGGGCTATG
CTTTTGTGACATTCAGAACTAAGGAGTTAGCTTCGCAGGCCATTGAGGAG
CTGAATAGTTGTGAATTAAAGGGAAAAAAAATAAAGTGCTCAGCAGCTCA
AGCAAAACATCGTTTGTTCATTGGTAATGTTCCCAGAAATTGGGGTGAAG
ATGATATGAGGAAGGCTGTAACAAAGATAGGACCAGGAGTTATTTCTATT
GAGTTGGTGAAGGACCCTCAGAATGCCAATCAGAATCGTGGGTTTGCTTT
CATTGAGTATTATAATCATGCATGCGCTGAATACTCAAGACAGAAAATGT
CAAACCCAAAGTTTAAGCTTGACGATAATGCTCCAACTGTGAGCTGGGCT
GACCCTAGAAATGCGGAGTCTTCTGCTGCTTCCCAGGTTAAGGCACTTTA
TGTCAAGAATTTACCCAAGGACATAACTCAGGATCGTTTAAAGGAGCTGT
TTGCTCATCATGGAAAGA
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