FC878108

Overview
NameFC878108
Unique NameFC878108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11955 contig Ccv1_Contig11955:109..974. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIAS_HUMAN (Lipoyl synthase, mitochondrial OS=Homo sapiens GN=LIAS PE=2 SV=3)

HSP 1 Score: 249.21 bits (635), Expect = 2.218e-65
Identity = 132/256 (51.56%), Postives = 162/256 (63.28%), Query Frame = 3
Query:  117 PTKFPQTLAGLRARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            P +   +L   +  L    P L DF+  DL   S++    G              W+K  IP G  Y ++K  LR L LHTVCEEA+CPN+GECW GGE  TATATIM++GDTCTRGCRFC+VKT+R           N A+AIA WGLDYVV+TSVDRDD+ D G+ H A+TV  LKE  P +L+E L PDFRG+   + +VA SGL+V+AHN+ETV ELQS VRD RANF QSL VL  AK   P   ++ TSI
Sbjct:   24 PVRPLSSLPDKKKELLQNGPDLQDFVSGDLADRSTWDEYKGNLKRQKGERLRLPPWLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDASEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHIAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQSKVRDPRANFDQSLRVLKHAKKVQP-DVISKTSI 278          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIAS_MOUSE (Lipoyl synthase, mitochondrial OS=Mus musculus GN=Lias PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 8.429e-65
Identity = 130/237 (54.85%), Postives = 157/237 (66.24%), Query Frame = 3
Query:  174 PALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            P L DF+  DL   S++    G              W+K  IP G  Y ++K  LR L LHTVCEEA+CPN+GECW GGE  TATATIM++GDTCTRGCRFC+VKT+R           N A+AIA WGLDYVV+TSVDRDD+AD G+ H A+TV  LKE  P +L+E L PDFRG+   V +VA SGL+V+AHN+ETV ELQ  VRD RANF QSL VL  AK+  P   ++ TSI
Sbjct:   42 PDLQDFVSGDLADKSTWDEYKGNLKRQKGERLRLPPWLKTKIPMGKNYNKLKNTLRNLSLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDANEPDNTAKAIAEWGLDYVVLTSVDRDDVADGGAEHIAKTVSCLKERNPKILVECLTPDFRGDLRAVEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLRHAKEVQP-DVVSKTSI 277          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIAS_BOVIN (Lipoyl synthase, mitochondrial OS=Bos taurus GN=LIAS PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.438e-64
Identity = 121/201 (60.20%), Postives = 146/201 (72.64%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K  IP G  Y ++K  LR L LHTVCEEA+CPN+GECW GGE  TATATIM++GDTCTRGCRFC+VKT+R           N A+AIA WGLDYVV+TSVDRDD+ D G+ HFA+TV  LKE  P +L+E L PDFRG+   + +VA SGL+V+AHN+ETV ELQ  VRD RANF QSL VL  AK+  P   ++ TSI
Sbjct:   79 WLKTEIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDANEPYNTAKAIAEWGLDYVVLTSVDRDDMPDGGAEHFAKTVSYLKERNPKILVECLTPDFRGDLKAIEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLKHAKEVRP-DVISKTSI 278          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIAS_RAT (Lipoyl synthase, mitochondrial OS=Rattus norvegicus GN=Lias PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.203e-64
Identity = 129/245 (52.65%), Postives = 157/245 (64.08%), Query Frame = 3
Query:  150 RARLASESPALSDFI--DLQSNSSYSVEVGTXXXXXXXXX----WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            + +     P L DF+  DL   S++    G              W+K  IP G  Y ++K  LR L LHTVCEEA+CPN+GECW GGE  TATATIM++GDTCTRGCRFC+VKT+R           N A AIA WGLDYVV+TSVDRDD+ D G+ H A+TV  LKE  P +L+E L PDFRG+   V +VA SGL+V+AHN+ETV ELQ  VRD RANF QSL VL  AK+  P   ++ TSI
Sbjct:   34 KKKFLHNGPDLQDFVSGDLADKSTWDDYKGNLKRQKGERLRLPPWLKTKIPMGKNYNKLKNTLRNLNLHTVCEEARCPNIGECWGGGEYATATATIMLMGDTCTRGCRFCSVKTARNPPPLDPSEPDNTARAIAEWGLDYVVLTSVDRDDVVDGGAEHIAKTVSCLKERNPKILVECLTPDFRGDLRAVEKVALSGLDVYAHNVETVPELQRKVRDPRANFDQSLRVLKHAKEVQP-DVVSKTSI 277          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_SCHPO (Lipoyl synthase, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC8D2.15 PE=2 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 3.315e-61
Identity = 123/249 (49.40%), Postives = 155/249 (62.25%), Query Frame = 3
Query:  144 GLRARLASESPALSDFIDLQS--------NSSYSVEVGTXXXXXXXXXWMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            G   +LA + P+ +DF+++               VE+           W+K  +P G  + +IK  LR   LHTVCEEAKCPN+GECW G +   ATATIM++GDTCTRGCRFC+VKTSR           N AEAI  W L Y+V+TSVDRDDL D G+ H A+T++K+KE  P++L+EAL PDF G    V  VAKSGL+VFAHN+ETVEEL   VRD RA ++QSL VL   K   P   +T TSI
Sbjct:   26 GFSEKLA-KGPSFADFLNMDKPLTADEAFELDRKVELPNGSIHKRLPSWLKTKVPLGTNFNRIKHDLRGSHLHTVCEEAKCPNIGECWGGKDKSRATATIMLMGDTCTRGCRFCSVKTSRRPGPLDPNEPENTAEAIKQWNLGYIVLTSVDRDDLTDLGANHIAKTIQKIKEKAPHILVEALTPDFSGRMDLVEIVAKSGLDVFAHNVETVEELTPFVRDRRATYRQSLSVLKHVKKTCP-HLITKTSI 272          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIP5_YEAST (Lipoyl synthase, mitochondrial OS=Saccharomyces cerevisiae GN=LIP5 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.179e-58
Identity = 113/201 (56.22%), Postives = 141/201 (70.15%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W+K  IP G  Y ++K  ++EL L TVCEEA+CPN+GECW G +   ATATIM+LGDTCTRGCRFC+VKT+R           N AEAI  WGL YVV+T+VDRDDL D G+ H A+TVRK+K+  PN L+E L  DFRG+   V  +A+ GL+V+AHN+ETVE L   VRD RA ++QSL VL  AK  VP+  +T TSI
Sbjct:  123 WLKVPIPKGTNYHKLKGDVKELGLSTVCEEARCPNIGECWGGKDKSKATATIMLLGDTCTRGCRFCSVKTNRTPSKPDPMEPENTAEAIKRWGLGYVVLTTVDRDDLVDGGANHLAETVRKIKQKAPNTLVETLSGDFRGDLKMVDIMAQCGLDVYAHNLETVESLTPHVRDRRATYRQSLSVLERAKATVPS-LITKTSI 322          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_HALSA (Probable lipoyl synthase OS=Halobacterium salinarium GN=lipA PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.126e-54
Identity = 100/184 (54.35%), Postives = 132/184 (71.74%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVL 815
            W+K   P G+++  IK+ LR+  LHTVCEEA CPN+GECWSG + G  TAT M++GD C+RGC FC+VKT             NVAE++A  GLDYVV+TSVDRDDL DQG+GHFA+T+R++KE  P++L+E L+PDF+G    V+++  +G +V AHNIETV   Q  VRD RA ++QSL VL
Sbjct:    9 WLKMRPPSGERFTDIKETLRDNDLHTVCEEASCPNMGECWSGRD-GPGTATFMLMGDRCSRGCNFCDVKTG-GMEPLDPDEPANVAESVAEIGLDYVVLTSVDRDDLDDQGAGHFARTIREIKERDPSILVEVLIPDFQGEKSLVQKIIDAGPDVIAHNIETVARRQVPVRDRRAGYEQSLSVL 190          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_HALS3 (Probable lipoyl synthase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=lipA PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.126e-54
Identity = 100/184 (54.35%), Postives = 132/184 (71.74%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVL 815
            W+K   P G+++  IK+ LR+  LHTVCEEA CPN+GECWSG + G  TAT M++GD C+RGC FC+VKT             NVAE++A  GLDYVV+TSVDRDDL DQG+GHFA+T+R++KE  P++L+E L+PDF+G    V+++  +G +V AHNIETV   Q  VRD RA ++QSL VL
Sbjct:    9 WLKMRPPSGERFTDIKETLRDNDLHTVCEEASCPNMGECWSGRD-GPGTATFMLMGDRCSRGCNFCDVKTG-GMEPLDPDEPANVAESVAEIGLDYVVLTSVDRDDLDDQGAGHFARTIREIKERDPSILVEVLIPDFQGEKSLVQKIIDAGPDVIAHNIETVARRQVPVRDRRAGYEQSLSVL 190          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_HALLT (Probable lipoyl synthase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=lipA PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.667e-53
Identity = 98/184 (53.26%), Postives = 132/184 (71.74%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVL 815
            W+K   P G ++ +IK++LRE  LHTVCEEA CPN+GECWSG + G  TAT M++GD C+RGC FC+V+T             NVA+A+A  GLDYVV+TSVDRDDLAD GS HFA+T+R+++   P +L+E L+PDF+G+   +  +  +G +V AHN+ETVE LQ  VRD RA+++QSL VL
Sbjct:   10 WLKSRPPSGSRFTEIKERLRERDLHTVCEEANCPNMGECWSGRD-GPGTATFMLMGDRCSRGCNFCDVETG-GMKSLDSDEPENVADAVAEIGLDYVVLTSVDRDDLADGGSEHFAETIREIQRRDPEILVETLIPDFQGDPEAIDRIIDAGPDVIAHNVETVERLQWPVRDRRADYEQSLAVL 191          
BLAST of FC878108 vs. ExPASy Swiss-Prot
Match: LIPA_ANADE (Lipoyl synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=lipA PE=3 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.263e-52
Identity = 100/201 (49.75%), Postives = 138/201 (68.66%), Query Frame = 3
Query:  264 WMKESIPGGDKYVQIKKKLRELKLHTVCEEAKCPNLGECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRAXXXXXXXXXTNVAEAIASWGLDYVVITSVDRDDLADQGSGHFAQTVRKLKELKPNMLIEALVPDFRGNNGCVREVAKSGLNVFAHNIETVEELQSAVRDHRANFKQSLDVLMMAKDYVPAGTLTXTSI 866
            W++ ++PGG++Y ++++ L+ L+LHTVC EA CPN+ ECW GG     TAT+M++GD CTRGCRFCNVKT+            ++A AIA  GLDY+V+TSVDRDDL D G+ HFA  +R+LKE+ P +L+E L PDFRG+   VR V ++  +VFA+N+ETV  L  AVRD +A + Q+L VL   K   P   +T +SI
Sbjct:    8 WLRVNVPGGERYQKVRETLKGLQLHTVCAEAHCPNVAECWGGG-----TATVMLMGDVCTRGCRFCNVKTAAHPPALDPDEPRHLAAAIAELGLDYIVVTSVDRDDLPDGGAAHFADAIRRLKEI-PGLLVEVLTPDFRGDPAAVRTVGRAAPDVFANNLETVRRLTPAVRDAKATYDQTLGVLAQMKREFPQ-VVTKSSI 201          
The following BLAST results are available for this feature:
BLAST of FC878108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LIAS_HUMAN2.218e-6551.56Lipoyl synthase, mitochondrial OS=Homo sapiens GN=... [more]
LIAS_MOUSE8.429e-6554.85Lipoyl synthase, mitochondrial OS=Mus musculus GN=... [more]
LIAS_BOVIN1.438e-6460.20Lipoyl synthase, mitochondrial OS=Bos taurus GN=LI... [more]
LIAS_RAT3.203e-6452.65Lipoyl synthase, mitochondrial OS=Rattus norvegicu... [more]
LIPA_SCHPO3.315e-6149.40Lipoyl synthase, mitochondrial OS=Schizosaccharomy... [more]
LIP5_YEAST1.179e-5856.22Lipoyl synthase, mitochondrial OS=Saccharomyces ce... [more]
LIPA_HALSA5.126e-5454.35Probable lipoyl synthase OS=Halobacterium salinari... [more]
LIPA_HALS35.126e-5454.35Probable lipoyl synthase OS=Halobacterium salinaru... [more]
LIPA_HALLT5.667e-5353.26Probable lipoyl synthase OS=Halorubrum lacusprofun... [more]
LIPA_ANADE1.263e-5249.75Lipoyl synthase OS=Anaeromyxobacter dehalogenans (... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878108 ID=FC878108; Name=FC878108; organism=Citrus clementina; type=EST; length=866bp
CAGAGAGAGAAAAAAAATCGGCCATGCGATCGCGGTTCACATTAGCCCTA
GCTCGCACTTTAACAAGCAGAACGAGACCGTTTTCATCGTCAGCACAAAC
CCCACCAACCGAACGGCCCACCAAATTCCCCCAAACTCTCGCGGGCCTCC
GTGCCCGCCTGGCCTCCGAGTCACCCGCCCTCTCCGATTTCATCGACCTC
CAAAGCAACAGTTCGTACTCCGTCGAAGTTGGAACCAAAAAGAAGCCCCT
TCCCAAGCCCAAATGGATGAAGGAATCGATCCCCGGCGGCGATAAATACG
TTCAGATTAAGAAAAAATTGCGCGAGTTGAAGCTTCACACTGTTTGTGAA
GAGGCCAAGTGCCCAAATTTGGGGGAGTGTTGGTCTGGCGGCGAGACGGG
CACTGCAACGGCCACAATTATGATCTTGGGCGATACCTGTACTCGCGGTT
GCAGGTTTTGCAATGTGAAGACGTCGCGTGCACCTCCACCACCTGACCCA
GACGAGCCTACTAATGTTGCTGAGGCAATTGCGTCCTGGGGTTTGGATTA
TGTGGTGATTACTAGTGTTGATAGAGATGATTTAGCTGATCAGGGAAGTG
GGCATTTTGCTCAGACGGTGCGGAAGTTGAAAGAATTGAAGCCGAATATG
CTTATTGAAGCATTGGTTCCTGATTTTCGCGGAAACAACGGCTGTGTGCG
GGAAGTTGCCAAGTCAGGGTTGAATGTCTTTGCTCATAATATTGAGACGG
TTGAAGAGCTTCAAAGTGCTGTGAGGGATCACCGTGCTAATTTTAAGCAA
TCCTTGGACGTTCTAATGATGGCCAAAGACTATGTTCCTGCTGGAACACT
CACCNAGACCTCCATA
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