FC878115

Overview
NameFC878115
Unique NameFC878115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length874
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15521 contig Ccv1_Contig15521:90..963. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878115 vs. ExPASy Swiss-Prot
Match: DCR_ARATH (BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 4.490e-90
Identity = 175/296 (59.12%), Postives = 211/296 (71.28%), Query Frame = 3
Query:   27 KVKITSKTHVKPSK-VIGRRECQLVTFDLPYLFFYYNQKLLLYRNG---DREF----HDAVEKLKDGLKHVLEEFYQLAGKLGKDEEGVFRVEYXXXXXXXXXXXXXXXXXXXXX---LTAEEGTKSFKELIPYYGVLNLEGTHRPLLALQLTKLKDGMVIGCAFNHAILDGTSTWHFMSSWAQACNGATSVSVPPFLERTKSRNTRVKLDPSLPPDPHSQSSGDAAAK---QEPVLREKVFKFSEAAIDKIKSKVNENGPSDGSKPFSTFQSLAVHIWRHVTHARSLKPEDYTVF 872
            K+KI SKTHVKP+K V+G+++  L TFDLPYL FYYNQK LLY+     D E     ++ VE LKDGL  VLE+FYQLAGKL KD+EGVFRVEY                        LTAE+GT  FKEL+PY G+LNLEG  RPLLA+Q+TKLKDG+ +G AFNHA+LDGTSTWHFMSSWA+ C GA S+S  PFL+R+K+R+TRVKLD + P DP+  S+G+ AA    + P L EK+F+FS+ A+  IKS+ N   PSD SKPFSTFQSL  HIWRHVT AR LKPED T+F
Sbjct:    2 KIKIMSKTHVKPTKPVLGKKQFHLTTFDLPYLAFYYNQKFLLYKFQNLLDLEEPTFQNEVVENLKDGLGLVLEDFYQLAGKLAKDDEGVFRVEYDAEDSEINGVEFSVAHAADVTVDDLTAEDGTAKFKELVPYNGILNLEGLSRPLLAVQVTKLKDGLAMGLAFNHAVLDGTSTWHFMSSWAEICRGAQSISTQPFLDRSKARDTRVKLDLTAPKDPNETSNGEDAANPTVEPPQLVEKIFRFSDFAVHTIKSRANSVIPSDSSKPFSTFQSLTSHIWRHVTLARGLKPEDITIF 297          
BLAST of FC878115 vs. ExPASy Swiss-Prot
Match: Y3028_ARATH (Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.074e-23
Identity = 78/293 (26.62%), Postives = 134/293 (45.73%), Query Frame = 3
Query:   12 MAEITKVKITSKTHVKPSKVI--GRRECQLVTFDLPYLFFYYNQKLLLYRNGDREFHDAVEKLKDGLKHVLEEFYQLAGKLGK-----DEEGVFRVEYXXXXXXXXXXXXXXXXXXXXXLTAEEGTKSFKELIPYYGVLNLEGTHRPLLALQLTKLKDGMVIGCAFNHAILDGTSTWHFMSSWAQACNGATSVSVPPFLERTKSRNTRVKLDPSLPPDPHSQSSGDAAAKQEPVLREKVFKFSEAAIDKIKSKVN-ENGPSDGSKPFSTFQSLAVHIWRHVTHARSLKPEDYT 866
            MA++T +   S + V+P  +   GR +  L  FDL  L+  Y Q+ LL+   D E H  + +L+  L   L+ ++  AG+L K     DE   F +                                F+   P  GV +++G   PLLALQ+T+++DG+ IG  +NH + DG S W+F  +W++ C+     ++ P   +    +    +D  +        +   + +  P  +E+VF F++  I  +K+KVN E G  D     S+ Q+++ H+WR +     L  E+ T
Sbjct:    1 MADVTFI---SSSIVRPQIINQEGREKIHLTPFDLNLLYVDYTQRGLLFPKPDPETH-FISRLRTSLSSALDIYFPFAGRLNKVENHEDETVSFYINCDGSGAKFIHAVSDSVSVSDLLRPDGSVPDFFRIFYPMNGVKSIDGLSEPLLALQVTEMRDGVFIGFGYNHMVADGASIWNFFRTWSKICSNGQRENLQPLALKGLFVD---GMDFPIHIPVSDTETSPPSRELSPTFKERVFHFTKRNISDLKAKVNGEIGLRD--HKVSSLQAVSAHMWRSIIRHSGLNQEEKT 284          
The following BLAST results are available for this feature:
BLAST of FC878115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DCR_ARATH4.490e-9059.12BAHD acyltransferase DCR OS=Arabidopsis thaliana G... [more]
Y3028_ARATH8.074e-2326.62Uncharacterized acetyltransferase At3g50280 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA3CA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA3CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878115 ID=FC878115; Name=FC878115; organism=Citrus clementina; type=EST; length=874bp
TAATATTAGAAATGGCAGAGATAACAAAGGTGAAGATTACAAGCAAAACC
CATGTGAAGCCGAGCAAAGTGATAGGAAGAAGAGAGTGTCAGCTGGTGAC
TTTTGATCTGCCGTATCTGTTTTTTTATTACAACCAGAAGCTGTTGTTGT
ATAGAAACGGGGACCGTGAGTTTCACGACGCTGTCGAGAAACTCAAAGAT
GGGCTTAAGCATGTGTTGGAGGAGTTTTATCAGCTGGCTGGGAAGCTGGG
GAAAGATGAAGAAGGTGTCTTTAGGGTTGAGTATGATGATGACATGGACG
GCGTCGAGGTGGCCGAGGCCGTCGCTGATGAGATCGCCGTCGATGATCTG
ACGGCTGAGGAAGGCACCAAGAGTTTCAAGGAGTTGATTCCCTATTATGG
AGTCCTGAATTTGGAGGGGACTCATCGGCCTTTGTTGGCTCTTCAGTTGA
CCAAGCTGAAAGACGGAATGGTAATTGGATGCGCGTTCAATCACGCGATC
CTAGACGGCACCTCCACGTGGCACTTCATGAGCTCATGGGCCCAGGCGTG
CAACGGGGCCACCTCGGTCTCGGTCCCACCTTTCCTGGAGCGCACAAAAT
CCCGCAACACGCGCGTGAAGCTCGACCCCTCACTCCCCCCGGACCCACAC
TCCCAATCCAGCGGCGACGCTGCTGCCAAGCAGGAACCGGTGCTAAGAGA
GAAAGTCTTTAAATTCTCCGAAGCGGCCATCGACAAGATCAAGTCAAAAG
TCAACGAAAACGGGCCATCGGACGGTTCAAAACCGTTCTCAACGTTCCAA
TCACTAGCTGTGCATATCTGGCGCCATGTAACCCATGCACGTAGCCTAAA
ACCCGAAGACTACACAGTCTTCAC
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