FC878146

Overview
NameFC878146
Unique NameFC878146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length876
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10909 contig Ccv1_Contig10909:437..1312. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878146 vs. ExPASy Swiss-Prot
Match: TOCC_ARATH (Tocopherol cyclase, chloroplastic OS=Arabidopsis thaliana GN=VTE1 PE=1 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 1.188e-90
Identity = 149/193 (77.20%), Postives = 170/193 (88.08%), Query Frame = 3 
Query:   18 YHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGII 596
            YHFDG+ R+FFEGWYFRVSIPE+++SFC +YSVENPAF++ LS LEVA +GPRFTGVG QILGA+DKY+C Y ++S NFWG RHEL+LGNTF A  G++ P KEVPP+EFNRRV EGFQ TP WHQG I DDGRT++AETVKSARWEYSTRPVYGWG+VG+KQ STAGW AAFPVFEPHWQICMAGGLSTG I
Sbjct:   82 YHFDGTPRKFFEGWYFRVSIPEKRESFCFMYSVENPAFRQSLSPLEVALYGPRFTGVGAQILGANDKYLCQYEQDSHNFWGDRHELVLGNTFSAVPGAKAPNKEVPPEEFNRRVSEGFQATPFWHQGHICDDGRTDYAETVKSARWEYSTRPVYGWGDVGAKQKSTAGWPAAFPVFEPHWQICMAGGLSTGWI 274
[Close]
BLAST of FC878146 vs. ExPASy Swiss-Prot
Match: TOCC_MAIZE (Probable tocopherol cyclase, chloroplastic OS=Zea mays GN=SDX1 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.703e-84
Identity = 141/193 (73.06%), Postives = 163/193 (84.46%), Query Frame = 3 
Query:   18 YHFDGSTRRFFEGWYFRVSIPERKQSFCIIYSVENPAFKKKLSSLEVAQHGPRFTGVGVQILGADDKYMCHYSEESSNFWGSRHELMLGNTFRADKGSQPPTKEVPPQEFNRRVLEGFQVTPLWHQGCIHDDGRTNFAETVKSARWEYSTRPVYGWGNVGSKQNSTAGWLAAFPVFEPHWQICMAGGLSTGII 596
            YHFDG+ R FFEGWYF+VSIPE +QSFC +YSVENP F+  +S L+   + PRFTGVG QILGADDKY+C +SE+S+NFWGSRHELMLGNTF ++K S PP  EVPPQ+F+RRVLEG QVTP+WHQG I DDGR+N+   V++ARWEYSTRPVYGWG+V SKQ STAGWLAAFP FEPHWQICMA GLSTG I
Sbjct:   71 YHFDGTARPFFEGWYFKVSIPECRQSFCFMYSVENPLFRDGMSDLDKLLYRPRFTGVGAQILGADDKYICQFSEKSNNFWGSRHELMLGNTFISNKESTPPQGEVPPQDFSRRVLEGLQVTPIWHQGFIRDDGRSNYVPNVQTARWEYSTRPVYGWGDVKSKQLSTAGWLAAFPFFEPHWQICMARGLSTGWI 263
The following BLAST results are available for this feature:
BLAST of FC878146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TOCC_ARATH1.188e-9077.20Tocopherol cyclase, chloroplastic OS=Arabidopsis t... [more]
TOCC_MAIZE3.703e-8473.06Probable tocopherol cyclase, chloroplastic OS=Zea ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA88DH11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878146 ID=FC878146; Name=FC878146; organism=Citrus clementina; type=EST; length=876bp
TGAATACTTGAATCAGGTACCATTTTGATGGGAGTACTCGTAGGTTTTTT
GAGGGTTGGTATTTTAGGGTCTCAATTCCAGAGCGAAAGCAAAGCTTTTG
CATTATTTATTCGGTGGAGAATCCTGCATTTAAGAAAAAATTATCGTCAT
TGGAAGTTGCACAGCATGGACCTAGATTTACAGGAGTTGGGGTTCAAATT
CTTGGTGCCGATGACAAGTATATGTGCCATTACTCTGAAGAGTCTTCAAA
CTTTTGGGGAAGTAGGCACGAGCTGATGCTGGGGAATACTTTCAGAGCTG
ATAAAGGTTCACAGCCTCCAACTAAGGAGGTTCCTCCTCAGGAATTTAAC
AGAAGAGTGTTGGAAGGTTTTCAAGTCACCCCACTGTGGCACCAAGGTTG
TATTCATGATGATGGAAGGACAAATTTTGCTGAAACTGTGAAATCTGCAC
GTTGGGAATACAGTACTCGGCCTGTTTATGGATGGGGTAATGTTGGGTCA
AAACAAAATTCAACAGCAGGCTGGCTAGCAGCTTTTCCAGTATTCGAACC
ACATTGGCAAATATGCATGGCAGGCGGACTTTCAACAGGCATTATTGTCT
CCTCCTTTTTTTAAACTTATAGATTCTATTAATTGGTTTATTTTCCTGCT
TTTAATGATGATTTTGTTAATTTTGGGTTTTAAAAAAAGTAGTAATATAA
TTGTTAACATATCATTATTTTTCCCAAGCAAACACATTTTGCTGGGTCTT
TTATGTACTTTTCCTTAGCTGAAATTTAGAATGGCTTGTATTAGAAATCT
CTGTGCTGTGGGATTTGTCTCCAGATTTGACTTTGAATAACAGGTTGGAT
AGAGTGGGATGGCCAAAGGGTTGAAT
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